Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces
Key message A novel locus for Fusarium crown rot (FCR) resistance was identified on chromosome 1B at 641.36–645.13 Mb using GWAS and could averagely increase 39.66% of FCR resistance in a biparental population. Fusarium crown rot can cause considerable yield losses. Developing and growing resistance...
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| Veröffentlicht in: | Theoretical and applied genetics 2023-05, Vol.136 (5), p.101-101, Article 101 |
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| creator | Hou, Shuai Lin, Yu Yu, Shifan Yan, Ning Chen, Hao Shi, Haoran Li, Caixia Wang, Zhiqiang Liu, Yaxi |
| description | Key message
A novel locus for Fusarium crown rot (FCR) resistance was identified on chromosome 1B at 641.36–645.13 Mb using GWAS and could averagely increase 39.66% of FCR resistance in a biparental population.
Fusarium crown rot can cause considerable yield losses. Developing and growing resistance cultivars is one of the most effective approaches for controlling this disease. In this study, 361 Chinese wheat landraces were evaluated for FCR resistance, and 27 with the disease index lower than 30.00 showed potential in wheat breeding programs. Using a genome-wide association study approach, putative quantitative trait loci (QTL) for FCR resistance was identified. A total of 21 putative loci on chromosomes 1A, 1B, 2B, 2D, 3B, 3D, 4B, 5A, 5B, 7A, and 7B were significantly associated with FCR resistance. Among these, a major locus
Qfcr.sicau.1B-4
was consistently identified among all the trials on chromosome 1B with the physical regions from 641.36 to 645.13 Mb. A polymorphism kompetitive allele-specific polymerase (KASP) marker was developed and used to validate its effect in an F
2:3
population consisting of 136 lines. The results showed the presence of this resistance allele could explain up to 39.66% of phenotypic variance compared to its counterparts. In addition, quantitative real-time polymerase chain reaction showed that two candidate genes of
Qfcr.sicau.1B-4
were differently expressed after inoculation. Our study provided useful information for improving FCR resistance in wheat. |
| doi_str_mv | 10.1007/s00122-023-04289-y |
| format | Article |
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A novel locus for Fusarium crown rot (FCR) resistance was identified on chromosome 1B at 641.36–645.13 Mb using GWAS and could averagely increase 39.66% of FCR resistance in a biparental population.
Fusarium crown rot can cause considerable yield losses. Developing and growing resistance cultivars is one of the most effective approaches for controlling this disease. In this study, 361 Chinese wheat landraces were evaluated for FCR resistance, and 27 with the disease index lower than 30.00 showed potential in wheat breeding programs. Using a genome-wide association study approach, putative quantitative trait loci (QTL) for FCR resistance was identified. A total of 21 putative loci on chromosomes 1A, 1B, 2B, 2D, 3B, 3D, 4B, 5A, 5B, 7A, and 7B were significantly associated with FCR resistance. Among these, a major locus
Qfcr.sicau.1B-4
was consistently identified among all the trials on chromosome 1B with the physical regions from 641.36 to 645.13 Mb. A polymorphism kompetitive allele-specific polymerase (KASP) marker was developed and used to validate its effect in an F
2:3
population consisting of 136 lines. The results showed the presence of this resistance allele could explain up to 39.66% of phenotypic variance compared to its counterparts. In addition, quantitative real-time polymerase chain reaction showed that two candidate genes of
Qfcr.sicau.1B-4
were differently expressed after inoculation. Our study provided useful information for improving FCR resistance in wheat.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-023-04289-y</identifier><identifier>PMID: 37027037</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agricultural research ; Agriculture ; Alleles ; Association analysis ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Chromosome Mapping ; Control ; Crown rot ; Cultivars ; Disease Resistance - genetics ; Diseases and pests ; Fungal diseases of plants ; Fusarium ; Genetic aspects ; Genome-wide association studies ; Genome-Wide Association Study ; Genomes ; Inoculation ; Landraces ; Life Sciences ; Methods ; Original Article ; Phenotype ; Phenotypic variations ; Plant Biochemistry ; Plant Breeding ; Plant Breeding/Biotechnology ; Plant Diseases - genetics ; Plant Genetics and Genomics ; Plant immunology ; Quantitative trait loci ; Triticum - genetics ; Wheat</subject><ispartof>Theoretical and applied genetics, 2023-05, Vol.136 (5), p.101-101, Article 101</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><rights>COPYRIGHT 2023 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c476t-372237e58be1356e127acfcf2c13733eb1cd77cc5e1ff0cbfa58968ed865e0303</citedby><cites>FETCH-LOGICAL-c476t-372237e58be1356e127acfcf2c13733eb1cd77cc5e1ff0cbfa58968ed865e0303</cites><orcidid>0000-0001-6814-7218</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-023-04289-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-023-04289-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37027037$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hou, Shuai</creatorcontrib><creatorcontrib>Lin, Yu</creatorcontrib><creatorcontrib>Yu, Shifan</creatorcontrib><creatorcontrib>Yan, Ning</creatorcontrib><creatorcontrib>Chen, Hao</creatorcontrib><creatorcontrib>Shi, Haoran</creatorcontrib><creatorcontrib>Li, Caixia</creatorcontrib><creatorcontrib>Wang, Zhiqiang</creatorcontrib><creatorcontrib>Liu, Yaxi</creatorcontrib><title>Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Key message
A novel locus for Fusarium crown rot (FCR) resistance was identified on chromosome 1B at 641.36–645.13 Mb using GWAS and could averagely increase 39.66% of FCR resistance in a biparental population.
Fusarium crown rot can cause considerable yield losses. Developing and growing resistance cultivars is one of the most effective approaches for controlling this disease. In this study, 361 Chinese wheat landraces were evaluated for FCR resistance, and 27 with the disease index lower than 30.00 showed potential in wheat breeding programs. Using a genome-wide association study approach, putative quantitative trait loci (QTL) for FCR resistance was identified. A total of 21 putative loci on chromosomes 1A, 1B, 2B, 2D, 3B, 3D, 4B, 5A, 5B, 7A, and 7B were significantly associated with FCR resistance. Among these, a major locus
Qfcr.sicau.1B-4
was consistently identified among all the trials on chromosome 1B with the physical regions from 641.36 to 645.13 Mb. A polymorphism kompetitive allele-specific polymerase (KASP) marker was developed and used to validate its effect in an F
2:3
population consisting of 136 lines. The results showed the presence of this resistance allele could explain up to 39.66% of phenotypic variance compared to its counterparts. In addition, quantitative real-time polymerase chain reaction showed that two candidate genes of
Qfcr.sicau.1B-4
were differently expressed after inoculation. Our study provided useful information for improving FCR resistance in wheat.</description><subject>Agricultural research</subject><subject>Agriculture</subject><subject>Alleles</subject><subject>Association analysis</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosome Mapping</subject><subject>Control</subject><subject>Crown rot</subject><subject>Cultivars</subject><subject>Disease Resistance - genetics</subject><subject>Diseases and pests</subject><subject>Fungal diseases of plants</subject><subject>Fusarium</subject><subject>Genetic aspects</subject><subject>Genome-wide association studies</subject><subject>Genome-Wide Association Study</subject><subject>Genomes</subject><subject>Inoculation</subject><subject>Landraces</subject><subject>Life Sciences</subject><subject>Methods</subject><subject>Original Article</subject><subject>Phenotype</subject><subject>Phenotypic variations</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Diseases - genetics</subject><subject>Plant Genetics and Genomics</subject><subject>Plant immunology</subject><subject>Quantitative trait loci</subject><subject>Triticum - genetics</subject><subject>Wheat</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kd1rFDEUxYModlv9B3yQgC_6MPUmmZnMPpbFfkBB8ONNCNnMzTZlJ6m5M2z3vzfbrZYVkTwEcn_ncE8OY28EnAoA_ZEAhJQVSFVBLbt5tX3GZqJWspKyls_ZDKCGqtGNPGLHRLcAIBtQL9mR0iA1KD1jPy4wpgGrTeiRW6Lkgh1DitxGu95SIJ48P5_I5jAN3OW0iTynkWcss9FGhzxEvrgJEQn55gbtyNc29tk6pFfshbdrwteP9wn7fv7p2-Kyuv58cbU4u65crduxUlpKpbHplihU06KQ2jrvvHRCaaVwKVyvtXMNCu_BLb1tunnbYd-1DYICdcLe733vcvo5IY1mCORwXRbBNJGRet5pIVWnC_ruL_Q2TblkfaB0XWuhuidqZddoQvRpLIF2puZsx8i2q3dep_-gyulxCC5F9KG8Hwg-HAgKM-L9uLITkbn6-uWQlXu2_DlRRm_uchhs3hoBZle_2ddvSv3moX6zLaK3j-mm5YD9H8nvvgug9gCVUVxhfor_H9tfeAC5Fg</recordid><startdate>20230501</startdate><enddate>20230501</enddate><creator>Hou, Shuai</creator><creator>Lin, Yu</creator><creator>Yu, Shifan</creator><creator>Yan, Ning</creator><creator>Chen, Hao</creator><creator>Shi, Haoran</creator><creator>Li, Caixia</creator><creator>Wang, Zhiqiang</creator><creator>Liu, Yaxi</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6814-7218</orcidid></search><sort><creationdate>20230501</creationdate><title>Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces</title><author>Hou, Shuai ; Lin, Yu ; Yu, Shifan ; Yan, Ning ; Chen, Hao ; Shi, Haoran ; Li, Caixia ; Wang, Zhiqiang ; Liu, Yaxi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c476t-372237e58be1356e127acfcf2c13733eb1cd77cc5e1ff0cbfa58968ed865e0303</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Agricultural research</topic><topic>Agriculture</topic><topic>Alleles</topic><topic>Association analysis</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosome Mapping</topic><topic>Control</topic><topic>Crown rot</topic><topic>Cultivars</topic><topic>Disease Resistance - genetics</topic><topic>Diseases and pests</topic><topic>Fungal diseases of plants</topic><topic>Fusarium</topic><topic>Genetic aspects</topic><topic>Genome-wide association studies</topic><topic>Genome-Wide Association Study</topic><topic>Genomes</topic><topic>Inoculation</topic><topic>Landraces</topic><topic>Life Sciences</topic><topic>Methods</topic><topic>Original Article</topic><topic>Phenotype</topic><topic>Phenotypic variations</topic><topic>Plant Biochemistry</topic><topic>Plant Breeding</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Diseases - genetics</topic><topic>Plant Genetics and Genomics</topic><topic>Plant immunology</topic><topic>Quantitative trait loci</topic><topic>Triticum - genetics</topic><topic>Wheat</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hou, Shuai</creatorcontrib><creatorcontrib>Lin, Yu</creatorcontrib><creatorcontrib>Yu, Shifan</creatorcontrib><creatorcontrib>Yan, Ning</creatorcontrib><creatorcontrib>Chen, Hao</creatorcontrib><creatorcontrib>Shi, Haoran</creatorcontrib><creatorcontrib>Li, Caixia</creatorcontrib><creatorcontrib>Wang, Zhiqiang</creatorcontrib><creatorcontrib>Liu, Yaxi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hou, Shuai</au><au>Lin, Yu</au><au>Yu, Shifan</au><au>Yan, Ning</au><au>Chen, Hao</au><au>Shi, Haoran</au><au>Li, Caixia</au><au>Wang, Zhiqiang</au><au>Liu, Yaxi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2023-05-01</date><risdate>2023</risdate><volume>136</volume><issue>5</issue><spage>101</spage><epage>101</epage><pages>101-101</pages><artnum>101</artnum><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
A novel locus for Fusarium crown rot (FCR) resistance was identified on chromosome 1B at 641.36–645.13 Mb using GWAS and could averagely increase 39.66% of FCR resistance in a biparental population.
Fusarium crown rot can cause considerable yield losses. Developing and growing resistance cultivars is one of the most effective approaches for controlling this disease. In this study, 361 Chinese wheat landraces were evaluated for FCR resistance, and 27 with the disease index lower than 30.00 showed potential in wheat breeding programs. Using a genome-wide association study approach, putative quantitative trait loci (QTL) for FCR resistance was identified. A total of 21 putative loci on chromosomes 1A, 1B, 2B, 2D, 3B, 3D, 4B, 5A, 5B, 7A, and 7B were significantly associated with FCR resistance. Among these, a major locus
Qfcr.sicau.1B-4
was consistently identified among all the trials on chromosome 1B with the physical regions from 641.36 to 645.13 Mb. A polymorphism kompetitive allele-specific polymerase (KASP) marker was developed and used to validate its effect in an F
2:3
population consisting of 136 lines. The results showed the presence of this resistance allele could explain up to 39.66% of phenotypic variance compared to its counterparts. In addition, quantitative real-time polymerase chain reaction showed that two candidate genes of
Qfcr.sicau.1B-4
were differently expressed after inoculation. Our study provided useful information for improving FCR resistance in wheat.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>37027037</pmid><doi>10.1007/s00122-023-04289-y</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-6814-7218</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0040-5752 |
| ispartof | Theoretical and applied genetics, 2023-05, Vol.136 (5), p.101-101, Article 101 |
| issn | 0040-5752 1432-2242 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2798712387 |
| source | MEDLINE; SpringerNature Journals |
| subjects | Agricultural research Agriculture Alleles Association analysis Biochemistry Biomedical and Life Sciences Biotechnology Chromosome Mapping Control Crown rot Cultivars Disease Resistance - genetics Diseases and pests Fungal diseases of plants Fusarium Genetic aspects Genome-wide association studies Genome-Wide Association Study Genomes Inoculation Landraces Life Sciences Methods Original Article Phenotype Phenotypic variations Plant Biochemistry Plant Breeding Plant Breeding/Biotechnology Plant Diseases - genetics Plant Genetics and Genomics Plant immunology Quantitative trait loci Triticum - genetics Wheat |
| title | Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces |
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