Quantum software interfaced with crystal-structure databases: tools, results and perspectives
Version 2.0 of Toth's Materials Toolkit runs under Windows and prepares ASCII input files for popular ab initio packages such as ABINIT, VASPetc. Those packages, obtainable from their respective developers, may run in desktop or supercomputer setups with Linux or Windows operating systems. The...
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description | Version 2.0 of Toth's Materials Toolkit runs under Windows and prepares ASCII input files for popular ab initio packages such as ABINIT, VASPetc. Those packages, obtainable from their respective developers, may run in desktop or supercomputer setups with Linux or Windows operating systems. The Toolkit input is taken at will from a direct plug into CRYSTMET, with 93000 crystal‐structure entries for metals and inorganic compounds, from CIF files of public‐domain crystal‐structure databases, or cut‐and‐paste from electronic journals followed by minimal free‐format editing. The collection of fully general and highly graphical tools grouped on two command screens operates on the structure description stored in an editable ASCII screen. After the model has been searched, modified and evaluated in a few keystrokes with the above tools, its ASCII input files for a selection of ab initio packages are produced by selecting the meaningful flags and run options on a dialog. The tedious structure manipulation or decomposition into multiple simulations is performed in the background. Execution is followed by production of a plain‐English job report. Four examples among the numerous possible applications of the Toolkit illustrate the fact that daunting topics, like the symmetry of chlorapatite, the voids and channels in the hydrogen‐storage material EuNi5, the energy per unit area of the contact plane for spinel twin in diamond, and the hardness of lonsdaleite versus diamond, are amenable to processing by materials scientists more versed in experiment than theory. The manual with tutorials and availability information can be found at http://www.tothcanada.com/toolkit/. |
doi_str_mv | 10.1107/S0021889805017358 |
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The Toolkit input is taken at will from a direct plug into CRYSTMET, with 93000 crystal‐structure entries for metals and inorganic compounds, from CIF files of public‐domain crystal‐structure databases, or cut‐and‐paste from electronic journals followed by minimal free‐format editing. The collection of fully general and highly graphical tools grouped on two command screens operates on the structure description stored in an editable ASCII screen. After the model has been searched, modified and evaluated in a few keystrokes with the above tools, its ASCII input files for a selection of ab initio packages are produced by selecting the meaningful flags and run options on a dialog. The tedious structure manipulation or decomposition into multiple simulations is performed in the background. Execution is followed by production of a plain‐English job report. Four examples among the numerous possible applications of the Toolkit illustrate the fact that daunting topics, like the symmetry of chlorapatite, the voids and channels in the hydrogen‐storage material EuNi5, the energy per unit area of the contact plane for spinel twin in diamond, and the hardness of lonsdaleite versus diamond, are amenable to processing by materials scientists more versed in experiment than theory. 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Appl. Cryst</addtitle><description>Version 2.0 of Toth's Materials Toolkit runs under Windows and prepares ASCII input files for popular ab initio packages such as ABINIT, VASPetc. Those packages, obtainable from their respective developers, may run in desktop or supercomputer setups with Linux or Windows operating systems. The Toolkit input is taken at will from a direct plug into CRYSTMET, with 93000 crystal‐structure entries for metals and inorganic compounds, from CIF files of public‐domain crystal‐structure databases, or cut‐and‐paste from electronic journals followed by minimal free‐format editing. The collection of fully general and highly graphical tools grouped on two command screens operates on the structure description stored in an editable ASCII screen. After the model has been searched, modified and evaluated in a few keystrokes with the above tools, its ASCII input files for a selection of ab initio packages are produced by selecting the meaningful flags and run options on a dialog. The tedious structure manipulation or decomposition into multiple simulations is performed in the background. Execution is followed by production of a plain‐English job report. Four examples among the numerous possible applications of the Toolkit illustrate the fact that daunting topics, like the symmetry of chlorapatite, the voids and channels in the hydrogen‐storage material EuNi5, the energy per unit area of the contact plane for spinel twin in diamond, and the hardness of lonsdaleite versus diamond, are amenable to processing by materials scientists more versed in experiment than theory. The manual with tutorials and availability information can be found at http://www.tothcanada.com/toolkit/.</description><subject>adsorption</subject><subject>catalysis</subject><subject>channels</subject><subject>clusters</subject><subject>computer programs</subject><subject>Condensed matter: structure, mechanical and thermal properties</subject><subject>Crystalline state (including molecular motions in solids)</subject><subject>diamond</subject><subject>elasticity</subject><subject>epitaxy</subject><subject>Exact sciences and technology</subject><subject>hardness</subject><subject>Physics</subject><subject>Structure of solids and liquids; crystallography</subject><subject>surfaces</subject><subject>Theory of crystal structure, crystal symmetry; calculations and modeling</subject><subject>twinning</subject><issn>1600-5767</issn><issn>0021-8898</issn><issn>1600-5767</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNqFkE2L1EAURYMoOI7-AHdB0JXRV5X6dCfNOCqj49iKIEhRqXqFGdNJW69i2__eSA8qunD13uKcy-VW1V0GjxgD_XgNwJkx1oAEpltprlVHTAE0Uit9_Y__ZnWL6BKAKc35UfXpYvZjmTc1TansfMa6Hwvm5APGeteXz3XIeyp-aKjkOZR5IaIvvvOE9KQu0zTQwzojzUOh2o-x3mKmLYbSf0O6Xd1IfiC8c3WPq_fPTt6tnjdn56cvVk_PmiA4yCZ0HVgUmkXGOyUsaK1VYshjUloIHYSBFBNPRgoe0bYqCmXQRu07C23XHlcPDrnbPH2dkYrb9BRwGPyI00yOaysVGLGA9_4CL6c5j0s3txQB23KjFogdoJAnoozJbXO_8XnvGLifa7t_1l6c-1fBnoIfUvZj6Om3qKxhStmFMwdu1w-4_3-we7l6e76WwOWiNge1p4Lff6k-f3FKt1q6D69P3cUrrdbt-qN70_4ASkSfAw</recordid><startdate>200508</startdate><enddate>200508</enddate><creator>Le Page, Yvon</creator><creator>Rodgers, John R.</creator><general>Munksgaard International Publishers</general><general>Blackwell</general><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope><scope>7SC</scope><scope>JQ2</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>200508</creationdate><title>Quantum software interfaced with crystal-structure databases: tools, results and perspectives</title><author>Le Page, Yvon ; Rodgers, John R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4205-cbb09e471d12b64907776f1e2df67447c480fdf2f8542de936d468e9d7ab903b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>adsorption</topic><topic>catalysis</topic><topic>channels</topic><topic>clusters</topic><topic>computer programs</topic><topic>Condensed matter: structure, mechanical and thermal properties</topic><topic>Crystalline state (including molecular motions in solids)</topic><topic>diamond</topic><topic>elasticity</topic><topic>epitaxy</topic><topic>Exact sciences and technology</topic><topic>hardness</topic><topic>Physics</topic><topic>Structure of solids and liquids; crystallography</topic><topic>surfaces</topic><topic>Theory of crystal structure, crystal symmetry; calculations and modeling</topic><topic>twinning</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Le Page, Yvon</creatorcontrib><creatorcontrib>Rodgers, John R.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>Journal of applied crystallography</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Le Page, Yvon</au><au>Rodgers, John R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantum software interfaced with crystal-structure databases: tools, results and perspectives</atitle><jtitle>Journal of applied crystallography</jtitle><addtitle>J. Appl. Cryst</addtitle><date>2005-08</date><risdate>2005</risdate><volume>38</volume><issue>4</issue><spage>697</spage><epage>705</epage><pages>697-705</pages><issn>1600-5767</issn><issn>0021-8898</issn><eissn>1600-5767</eissn><coden>JACGAR</coden><abstract>Version 2.0 of Toth's Materials Toolkit runs under Windows and prepares ASCII input files for popular ab initio packages such as ABINIT, VASPetc. Those packages, obtainable from their respective developers, may run in desktop or supercomputer setups with Linux or Windows operating systems. The Toolkit input is taken at will from a direct plug into CRYSTMET, with 93000 crystal‐structure entries for metals and inorganic compounds, from CIF files of public‐domain crystal‐structure databases, or cut‐and‐paste from electronic journals followed by minimal free‐format editing. The collection of fully general and highly graphical tools grouped on two command screens operates on the structure description stored in an editable ASCII screen. After the model has been searched, modified and evaluated in a few keystrokes with the above tools, its ASCII input files for a selection of ab initio packages are produced by selecting the meaningful flags and run options on a dialog. The tedious structure manipulation or decomposition into multiple simulations is performed in the background. Execution is followed by production of a plain‐English job report. Four examples among the numerous possible applications of the Toolkit illustrate the fact that daunting topics, like the symmetry of chlorapatite, the voids and channels in the hydrogen‐storage material EuNi5, the energy per unit area of the contact plane for spinel twin in diamond, and the hardness of lonsdaleite versus diamond, are amenable to processing by materials scientists more versed in experiment than theory. 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subjects | adsorption catalysis channels clusters computer programs Condensed matter: structure, mechanical and thermal properties Crystalline state (including molecular motions in solids) diamond elasticity epitaxy Exact sciences and technology hardness Physics Structure of solids and liquids crystallography surfaces Theory of crystal structure, crystal symmetry calculations and modeling twinning |
title | Quantum software interfaced with crystal-structure databases: tools, results and perspectives |
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