Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater
A novel -related strain, designated 6-D-6 , was isolated from the surface seawater collected around Xiamen Island. The novel strain is Gram-stain-negative, rod-shaped and motile, and grows at 10-45 °C, pH 6.0-9.0 and in the presence of 0.5-15.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rR...
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creator | Lai, Qiliang Fu, Xiaoteng Wang, Jianning Dong, Chunming Wang, Liping Wang, Wanpeng Shao, Zongze |
description | A novel
-related strain, designated 6-D-6
, was isolated from the surface seawater collected around Xiamen Island. The novel strain is Gram-stain-negative, rod-shaped and motile, and grows at 10-45 °C, pH 6.0-9.0 and in the presence of 0.5-15.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that it belongs to the genus
, with the highest sequence similarity to
B5
(99.9 %), followed by
JC109
(99.5 %),
MACL04
(99.3 %) and other 13 species of the genus
(93.8 %-95.6 %). The digital DNA-DNA hybridization and average nucleotide identity values between strain 6-D-6
and three close type strains were 40.1-42.9/90.6-91.4 %, and others were below 22.9/85.1 %, respectively. The novel strain contained major cellular fatty acids of C
(31.0 %), C
ω8
cyclo (23.5 %), C
cyclo (9.7 %), C
3OH (8.6 %), summed feature 8 (7.6 %) and C
(5.4 %). The genomic G+C content of strain 6-D-6
was 61.38 %. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified phospholipids and one amino-group-containing phospholipid were detected. On the basis of phenotypic and genotypic characteristics, strain 6-D-6
represents a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain is 6-D-6
(=MCCC 1A01359
=KCTC 92480
). |
doi_str_mv | 10.1099/ijsem.0.005798 |
format | Article |
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-related strain, designated 6-D-6
, was isolated from the surface seawater collected around Xiamen Island. The novel strain is Gram-stain-negative, rod-shaped and motile, and grows at 10-45 °C, pH 6.0-9.0 and in the presence of 0.5-15.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that it belongs to the genus
, with the highest sequence similarity to
B5
(99.9 %), followed by
JC109
(99.5 %),
MACL04
(99.3 %) and other 13 species of the genus
(93.8 %-95.6 %). The digital DNA-DNA hybridization and average nucleotide identity values between strain 6-D-6
and three close type strains were 40.1-42.9/90.6-91.4 %, and others were below 22.9/85.1 %, respectively. The novel strain contained major cellular fatty acids of C
(31.0 %), C
ω8
cyclo (23.5 %), C
cyclo (9.7 %), C
3OH (8.6 %), summed feature 8 (7.6 %) and C
(5.4 %). The genomic G+C content of strain 6-D-6
was 61.38 %. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified phospholipids and one amino-group-containing phospholipid were detected. On the basis of phenotypic and genotypic characteristics, strain 6-D-6
represents a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain is 6-D-6
(=MCCC 1A01359
=KCTC 92480
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005798</identifier><identifier>PMID: 37009847</identifier><language>eng</language><publisher>England</publisher><subject>Alcanivoraceae ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Sequence Analysis, DNA</subject><ispartof>International journal of systematic and evolutionary microbiology, 2023-03, Vol.73 (3)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c165t-269bb6d8de00734e81945966172866ab28be6b838003ad87be78527103223a463</cites><orcidid>0000-0002-6066-7013</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3745,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37009847$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lai, Qiliang</creatorcontrib><creatorcontrib>Fu, Xiaoteng</creatorcontrib><creatorcontrib>Wang, Jianning</creatorcontrib><creatorcontrib>Dong, Chunming</creatorcontrib><creatorcontrib>Wang, Liping</creatorcontrib><creatorcontrib>Wang, Wanpeng</creatorcontrib><creatorcontrib>Shao, Zongze</creatorcontrib><title>Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel
-related strain, designated 6-D-6
, was isolated from the surface seawater collected around Xiamen Island. The novel strain is Gram-stain-negative, rod-shaped and motile, and grows at 10-45 °C, pH 6.0-9.0 and in the presence of 0.5-15.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that it belongs to the genus
, with the highest sequence similarity to
B5
(99.9 %), followed by
JC109
(99.5 %),
MACL04
(99.3 %) and other 13 species of the genus
(93.8 %-95.6 %). The digital DNA-DNA hybridization and average nucleotide identity values between strain 6-D-6
and three close type strains were 40.1-42.9/90.6-91.4 %, and others were below 22.9/85.1 %, respectively. The novel strain contained major cellular fatty acids of C
(31.0 %), C
ω8
cyclo (23.5 %), C
cyclo (9.7 %), C
3OH (8.6 %), summed feature 8 (7.6 %) and C
(5.4 %). The genomic G+C content of strain 6-D-6
was 61.38 %. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified phospholipids and one amino-group-containing phospholipid were detected. On the basis of phenotypic and genotypic characteristics, strain 6-D-6
represents a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain is 6-D-6
(=MCCC 1A01359
=KCTC 92480
).</description><subject>Alcanivoraceae</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kDtPxDAQhC0E4nHQUiKXFCRsYsePEiFe0kk0UEe2sxE-JfFhJ8D9e3IcUM1qNDPSfoScF5AXoPW1XyXsc8gBKqnVHjkuuBBZBYzv_9-lOCInKa0AZgPgkBwxCaAVl8ekv-mcGfxHiOaLfnnT44BD8ommdU6H8JFfUbNV7Ghvoh-Qvm2aGJyJNgzBdSaN3lFr3IjRTz31KXRmxIa2MfQ0TbE1DmlC8zm78ZQctKZLeParC_J6f_dy-5gtnx-ebm-WmStENWal0NaKRjUIIBlHVWheaSEKWSohjC2VRWEVUwDMNEpalKoqZQGsLJnhgi3I5W53HcP7hGmse58cdp0ZMEypLqXmQjPgfI7mu6iLIaWIbb2Ofn51UxdQbxHXP4hrqHeI58LF7_Zke2z-439M2TeRkXin</recordid><startdate>202303</startdate><enddate>202303</enddate><creator>Lai, Qiliang</creator><creator>Fu, Xiaoteng</creator><creator>Wang, Jianning</creator><creator>Dong, Chunming</creator><creator>Wang, Liping</creator><creator>Wang, Wanpeng</creator><creator>Shao, Zongze</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6066-7013</orcidid></search><sort><creationdate>202303</creationdate><title>Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater</title><author>Lai, Qiliang ; Fu, Xiaoteng ; Wang, Jianning ; Dong, Chunming ; Wang, Liping ; Wang, Wanpeng ; Shao, Zongze</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c165t-269bb6d8de00734e81945966172866ab28be6b838003ad87be78527103223a463</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Alcanivoraceae</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lai, Qiliang</creatorcontrib><creatorcontrib>Fu, Xiaoteng</creatorcontrib><creatorcontrib>Wang, Jianning</creatorcontrib><creatorcontrib>Dong, Chunming</creatorcontrib><creatorcontrib>Wang, Liping</creatorcontrib><creatorcontrib>Wang, Wanpeng</creatorcontrib><creatorcontrib>Shao, Zongze</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lai, Qiliang</au><au>Fu, Xiaoteng</au><au>Wang, Jianning</au><au>Dong, Chunming</au><au>Wang, Liping</au><au>Wang, Wanpeng</au><au>Shao, Zongze</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2023-03</date><risdate>2023</risdate><volume>73</volume><issue>3</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel
-related strain, designated 6-D-6
, was isolated from the surface seawater collected around Xiamen Island. The novel strain is Gram-stain-negative, rod-shaped and motile, and grows at 10-45 °C, pH 6.0-9.0 and in the presence of 0.5-15.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that it belongs to the genus
, with the highest sequence similarity to
B5
(99.9 %), followed by
JC109
(99.5 %),
MACL04
(99.3 %) and other 13 species of the genus
(93.8 %-95.6 %). The digital DNA-DNA hybridization and average nucleotide identity values between strain 6-D-6
and three close type strains were 40.1-42.9/90.6-91.4 %, and others were below 22.9/85.1 %, respectively. The novel strain contained major cellular fatty acids of C
(31.0 %), C
ω8
cyclo (23.5 %), C
cyclo (9.7 %), C
3OH (8.6 %), summed feature 8 (7.6 %) and C
(5.4 %). The genomic G+C content of strain 6-D-6
was 61.38 %. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified phospholipids and one amino-group-containing phospholipid were detected. On the basis of phenotypic and genotypic characteristics, strain 6-D-6
represents a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain is 6-D-6
(=MCCC 1A01359
=KCTC 92480
).</abstract><cop>England</cop><pmid>37009847</pmid><doi>10.1099/ijsem.0.005798</doi><orcidid>https://orcid.org/0000-0002-6066-7013</orcidid></addata></record> |
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source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
subjects | Alcanivoraceae Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Seawater - microbiology Sequence Analysis, DNA |
title | Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater |
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