A glycosylation signature for predicting the progression and immunotherapeutic response of prostate cancer

Background Glycosylation has been proposed as a new cancer hallmark. However, focusing on specific glycans or glycoproteins may lose much data relevant to glycosylation alterations. The present study aimed to first comprehensively investigate the expression and mutation profiles of glycosylation‐rel...

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Veröffentlicht in:The journal of gene medicine 2023-06, Vol.25 (6), p.e3489-n/a
Hauptverfasser: Sun, Kailun, Feng, Zhaoyan, Fan, Chanyuan, Min, Xiangde, Zhang, Peipei, Xia, Liming
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container_issue 6
container_start_page e3489
container_title The journal of gene medicine
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creator Sun, Kailun
Feng, Zhaoyan
Fan, Chanyuan
Min, Xiangde
Zhang, Peipei
Xia, Liming
description Background Glycosylation has been proposed as a new cancer hallmark. However, focusing on specific glycans or glycoproteins may lose much data relevant to glycosylation alterations. The present study aimed to first comprehensively investigate the expression and mutation profiles of glycosylation‐related genes (GRgenes) in prostate cancer (PCa) and then develop a glycosylation signature and explore its role in predicting the progression and immunotherapeutic response of PCa. Methods Based on The Cancer Genome Atlas database, we comprehensively screened potential prognostic GRgenes and analyzed their expression and mutation profiles in PCa. Through consensus clustering analysis, the study cohort was classified to investigate the effect of glycosylation patterns on the prognosis of PCa. Next, we developed a glycosylation signature (i.e., the glycosylation score [Gly_score]) using the differentially expressed genes between glycosylation pattern groups and evaluated its role in predicting the progression and immunotherapeutic response of PCa. Results We identified two distinct glycosylation patterns in PCa and found that GRgene expression patterns rather than mutations are associated with the prognosis of PCa. The high Gly_score group had significantly shorter progression‐free survival, lower PD‐L1 levels, less infiltration of immune cells and lower immunophenoscores than the low Gly_score group. When the patients were grouped according to both the Gly_score and PD‐L1 level, patients with a combination of low Gly_score and low PD‐L1 expression had the best survival outcomes. Conclusions In the present study, for the first time, we developed a glycosylation signature and demonstrated that the proposed glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of PCa. Glycosylation has been proposed as a new cancer hallmark. Comprehensive expression and mutation profile analyses of glycosylation‐related genes revealed that expression patterns rather than mutations of glycosylation‐related genes may be associated with the prognosis of prostate cancer. The glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of prostate cancer.
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However, focusing on specific glycans or glycoproteins may lose much data relevant to glycosylation alterations. The present study aimed to first comprehensively investigate the expression and mutation profiles of glycosylation‐related genes (GRgenes) in prostate cancer (PCa) and then develop a glycosylation signature and explore its role in predicting the progression and immunotherapeutic response of PCa. Methods Based on The Cancer Genome Atlas database, we comprehensively screened potential prognostic GRgenes and analyzed their expression and mutation profiles in PCa. Through consensus clustering analysis, the study cohort was classified to investigate the effect of glycosylation patterns on the prognosis of PCa. Next, we developed a glycosylation signature (i.e., the glycosylation score [Gly_score]) using the differentially expressed genes between glycosylation pattern groups and evaluated its role in predicting the progression and immunotherapeutic response of PCa. Results We identified two distinct glycosylation patterns in PCa and found that GRgene expression patterns rather than mutations are associated with the prognosis of PCa. The high Gly_score group had significantly shorter progression‐free survival, lower PD‐L1 levels, less infiltration of immune cells and lower immunophenoscores than the low Gly_score group. When the patients were grouped according to both the Gly_score and PD‐L1 level, patients with a combination of low Gly_score and low PD‐L1 expression had the best survival outcomes. Conclusions In the present study, for the first time, we developed a glycosylation signature and demonstrated that the proposed glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of PCa. Glycosylation has been proposed as a new cancer hallmark. Comprehensive expression and mutation profile analyses of glycosylation‐related genes revealed that expression patterns rather than mutations of glycosylation‐related genes may be associated with the prognosis of prostate cancer. The glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of prostate cancer.</description><identifier>ISSN: 1099-498X</identifier><identifier>EISSN: 1521-2254</identifier><identifier>DOI: 10.1002/jgm.3489</identifier><identifier>PMID: 36814131</identifier><language>eng</language><publisher>England: Wiley Periodicals Inc</publisher><subject>B7-H1 Antigen ; Cluster Analysis ; Gene therapy ; Genomes ; Glycoproteins ; Glycosylation ; Humans ; Immunotherapy ; Male ; Medical prognosis ; Mutation ; PD-L1 protein ; Polysaccharides ; Prognosis ; Prostate cancer ; Prostatic Neoplasms - genetics ; Prostatic Neoplasms - therapy</subject><ispartof>The journal of gene medicine, 2023-06, Vol.25 (6), p.e3489-n/a</ispartof><rights>2023 John Wiley &amp; Sons Ltd.</rights><rights>2023 John Wiley &amp; Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3499-ae4f76fc33d59409eaf7fba23f2780a73b84ef401df88cf4c8bf1edf6207b0db3</citedby><cites>FETCH-LOGICAL-c3499-ae4f76fc33d59409eaf7fba23f2780a73b84ef401df88cf4c8bf1edf6207b0db3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjgm.3489$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjgm.3489$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36814131$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Kailun</creatorcontrib><creatorcontrib>Feng, Zhaoyan</creatorcontrib><creatorcontrib>Fan, Chanyuan</creatorcontrib><creatorcontrib>Min, Xiangde</creatorcontrib><creatorcontrib>Zhang, Peipei</creatorcontrib><creatorcontrib>Xia, Liming</creatorcontrib><title>A glycosylation signature for predicting the progression and immunotherapeutic response of prostate cancer</title><title>The journal of gene medicine</title><addtitle>J Gene Med</addtitle><description>Background Glycosylation has been proposed as a new cancer hallmark. However, focusing on specific glycans or glycoproteins may lose much data relevant to glycosylation alterations. The present study aimed to first comprehensively investigate the expression and mutation profiles of glycosylation‐related genes (GRgenes) in prostate cancer (PCa) and then develop a glycosylation signature and explore its role in predicting the progression and immunotherapeutic response of PCa. Methods Based on The Cancer Genome Atlas database, we comprehensively screened potential prognostic GRgenes and analyzed their expression and mutation profiles in PCa. Through consensus clustering analysis, the study cohort was classified to investigate the effect of glycosylation patterns on the prognosis of PCa. Next, we developed a glycosylation signature (i.e., the glycosylation score [Gly_score]) using the differentially expressed genes between glycosylation pattern groups and evaluated its role in predicting the progression and immunotherapeutic response of PCa. Results We identified two distinct glycosylation patterns in PCa and found that GRgene expression patterns rather than mutations are associated with the prognosis of PCa. The high Gly_score group had significantly shorter progression‐free survival, lower PD‐L1 levels, less infiltration of immune cells and lower immunophenoscores than the low Gly_score group. When the patients were grouped according to both the Gly_score and PD‐L1 level, patients with a combination of low Gly_score and low PD‐L1 expression had the best survival outcomes. Conclusions In the present study, for the first time, we developed a glycosylation signature and demonstrated that the proposed glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of PCa. Glycosylation has been proposed as a new cancer hallmark. Comprehensive expression and mutation profile analyses of glycosylation‐related genes revealed that expression patterns rather than mutations of glycosylation‐related genes may be associated with the prognosis of prostate cancer. The glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of prostate cancer.</description><subject>B7-H1 Antigen</subject><subject>Cluster Analysis</subject><subject>Gene therapy</subject><subject>Genomes</subject><subject>Glycoproteins</subject><subject>Glycosylation</subject><subject>Humans</subject><subject>Immunotherapy</subject><subject>Male</subject><subject>Medical prognosis</subject><subject>Mutation</subject><subject>PD-L1 protein</subject><subject>Polysaccharides</subject><subject>Prognosis</subject><subject>Prostate cancer</subject><subject>Prostatic Neoplasms - genetics</subject><subject>Prostatic Neoplasms - therapy</subject><issn>1099-498X</issn><issn>1521-2254</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kEtr3TAQRkVoyauB_oIg6KYbJ3r5SlqGkFdJ6CaB7oQsjxxdbOlWsgn331e3SVoodKURczgz8yH0mZIzSgg7Xw_TGRdK76FD2jLaMNaKD7UmWjdCqx8H6KiUNSFUKqX30QFfKSoop4dofYGHcetS2Y52DiniEoZo5yUD9injTYY-uDnEAc_PUL9pyFDKDrSxx2GalphqJ9sNLHNwuHY3KRbAye_oMtsZsLPRQf6EPno7Fjh5e4_R0_XV4-Vtc__95u7y4r5xXNR9LQgvV95x3rdaEA3WS99Zxj2TiljJOyXAC0J7r5TzwqnOU-j9ihHZkb7jx-jrq7fO_7lAmc0UioNxtBHSUgyTUnPRaioq-uUfdJ2WHOt2hilGhdSyJX-Frh5UMnizyWGyeWsoMbv8Tc3f7PKv6OmbcOkm6P-A74FXoHkFXsII2_-KzLebh9_CX73SkXQ</recordid><startdate>202306</startdate><enddate>202306</enddate><creator>Sun, Kailun</creator><creator>Feng, Zhaoyan</creator><creator>Fan, Chanyuan</creator><creator>Min, Xiangde</creator><creator>Zhang, Peipei</creator><creator>Xia, Liming</creator><general>Wiley Periodicals Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>202306</creationdate><title>A glycosylation signature for predicting the progression and immunotherapeutic response of prostate cancer</title><author>Sun, Kailun ; Feng, Zhaoyan ; Fan, Chanyuan ; Min, Xiangde ; Zhang, Peipei ; Xia, Liming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3499-ae4f76fc33d59409eaf7fba23f2780a73b84ef401df88cf4c8bf1edf6207b0db3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>B7-H1 Antigen</topic><topic>Cluster Analysis</topic><topic>Gene therapy</topic><topic>Genomes</topic><topic>Glycoproteins</topic><topic>Glycosylation</topic><topic>Humans</topic><topic>Immunotherapy</topic><topic>Male</topic><topic>Medical prognosis</topic><topic>Mutation</topic><topic>PD-L1 protein</topic><topic>Polysaccharides</topic><topic>Prognosis</topic><topic>Prostate cancer</topic><topic>Prostatic Neoplasms - genetics</topic><topic>Prostatic Neoplasms - therapy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Kailun</creatorcontrib><creatorcontrib>Feng, Zhaoyan</creatorcontrib><creatorcontrib>Fan, Chanyuan</creatorcontrib><creatorcontrib>Min, Xiangde</creatorcontrib><creatorcontrib>Zhang, Peipei</creatorcontrib><creatorcontrib>Xia, Liming</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of gene medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Kailun</au><au>Feng, Zhaoyan</au><au>Fan, Chanyuan</au><au>Min, Xiangde</au><au>Zhang, Peipei</au><au>Xia, Liming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A glycosylation signature for predicting the progression and immunotherapeutic response of prostate cancer</atitle><jtitle>The journal of gene medicine</jtitle><addtitle>J Gene Med</addtitle><date>2023-06</date><risdate>2023</risdate><volume>25</volume><issue>6</issue><spage>e3489</spage><epage>n/a</epage><pages>e3489-n/a</pages><issn>1099-498X</issn><eissn>1521-2254</eissn><abstract>Background Glycosylation has been proposed as a new cancer hallmark. However, focusing on specific glycans or glycoproteins may lose much data relevant to glycosylation alterations. The present study aimed to first comprehensively investigate the expression and mutation profiles of glycosylation‐related genes (GRgenes) in prostate cancer (PCa) and then develop a glycosylation signature and explore its role in predicting the progression and immunotherapeutic response of PCa. Methods Based on The Cancer Genome Atlas database, we comprehensively screened potential prognostic GRgenes and analyzed their expression and mutation profiles in PCa. Through consensus clustering analysis, the study cohort was classified to investigate the effect of glycosylation patterns on the prognosis of PCa. Next, we developed a glycosylation signature (i.e., the glycosylation score [Gly_score]) using the differentially expressed genes between glycosylation pattern groups and evaluated its role in predicting the progression and immunotherapeutic response of PCa. Results We identified two distinct glycosylation patterns in PCa and found that GRgene expression patterns rather than mutations are associated with the prognosis of PCa. The high Gly_score group had significantly shorter progression‐free survival, lower PD‐L1 levels, less infiltration of immune cells and lower immunophenoscores than the low Gly_score group. When the patients were grouped according to both the Gly_score and PD‐L1 level, patients with a combination of low Gly_score and low PD‐L1 expression had the best survival outcomes. Conclusions In the present study, for the first time, we developed a glycosylation signature and demonstrated that the proposed glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of PCa. Glycosylation has been proposed as a new cancer hallmark. Comprehensive expression and mutation profile analyses of glycosylation‐related genes revealed that expression patterns rather than mutations of glycosylation‐related genes may be associated with the prognosis of prostate cancer. The glycosylation signature is a promising tool for predicting the prognosis and immunotherapeutic response of prostate cancer.</abstract><cop>England</cop><pub>Wiley Periodicals Inc</pub><pmid>36814131</pmid><doi>10.1002/jgm.3489</doi><tpages>13</tpages></addata></record>
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subjects B7-H1 Antigen
Cluster Analysis
Gene therapy
Genomes
Glycoproteins
Glycosylation
Humans
Immunotherapy
Male
Medical prognosis
Mutation
PD-L1 protein
Polysaccharides
Prognosis
Prostate cancer
Prostatic Neoplasms - genetics
Prostatic Neoplasms - therapy
title A glycosylation signature for predicting the progression and immunotherapeutic response of prostate cancer
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