Paeniglutamicibacter quisquiliarum sp. nov., isolated from midden soil waste
A Gram-stain-positive, irregular short-rod and non-motile bacterium, designated strain ABSL32-1 , was isolated from a soil sample collected from the Suphan Buri municipal solid waste disposal area. According to the results of a polyphasic taxonomic study, a novel species belonging to the genus was d...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2022-12, Vol.72 (12) |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Sakdapetsiri, Chatsuda Ngaemthao, Wipaporn Suriyachadkun, Chanwit Pinyakong, Onruthai |
| description | A Gram-stain-positive, irregular short-rod and non-motile bacterium, designated strain ABSL32-1
, was isolated from a soil sample collected from the Suphan Buri municipal solid waste disposal area. According to the results of a polyphasic taxonomic study, a novel species belonging to the genus
was described. Strain ABSL32-1
grew optimally at 20-25 °C and at pH 6.0-8.0 in the presence of 1 % (w/v) NaCl. The whole-cell sugars were ribose, mannose and glucose. The peptidoglycan structure contained A4α peptidoglycan (Lys-Glu; A11.54). The polar lipids contained digalactosyldiacylglycerol, diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and two unidentified lipids. The major menaquinones were MK-9 and MK-10. The major cellular fatty acid was anteiso-C
(70.1 %). Based on 16S rRNA gene sequence analysis, strain ABSL32-1
showed the highest similarity to
DSM 20167
(99.5 %), followed by
SPC26
(99.0 %) and
AG31
(98.8 %). The genome of strain ABSL32-1
is 4.4 Mbp with a DNA G+C content of 66.0 mol%. The average nucleotide identity values between strain ABSL32-1
and the type strains
DSM20167
,
SPC26
and
AG31
were 86.6, 74.7 and 83.6 %, respectively. On the basis of phenotypic, chemotaxonomic and genotypic properties, strain ABSL32-1
is proposed to represent a novel species to be named
sp. nov. The type strain is ABSL32-1
(=TBRC 14976
=NBRC 115252
). |
| doi_str_mv | 10.1099/ijsem.0.005651 |
| format | Article |
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, was isolated from a soil sample collected from the Suphan Buri municipal solid waste disposal area. According to the results of a polyphasic taxonomic study, a novel species belonging to the genus
was described. Strain ABSL32-1
grew optimally at 20-25 °C and at pH 6.0-8.0 in the presence of 1 % (w/v) NaCl. The whole-cell sugars were ribose, mannose and glucose. The peptidoglycan structure contained A4α peptidoglycan (Lys-Glu; A11.54). The polar lipids contained digalactosyldiacylglycerol, diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and two unidentified lipids. The major menaquinones were MK-9 and MK-10. The major cellular fatty acid was anteiso-C
(70.1 %). Based on 16S rRNA gene sequence analysis, strain ABSL32-1
showed the highest similarity to
DSM 20167
(99.5 %), followed by
SPC26
(99.0 %) and
AG31
(98.8 %). The genome of strain ABSL32-1
is 4.4 Mbp with a DNA G+C content of 66.0 mol%. The average nucleotide identity values between strain ABSL32-1
and the type strains
DSM20167
,
SPC26
and
AG31
were 86.6, 74.7 and 83.6 %, respectively. On the basis of phenotypic, chemotaxonomic and genotypic properties, strain ABSL32-1
is proposed to represent a novel species to be named
sp. nov. The type strain is ABSL32-1
(=TBRC 14976
=NBRC 115252
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005651</identifier><identifier>PMID: 36748475</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Peptidoglycan - chemistry ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil - chemistry ; Soil Microbiology ; Thailand</subject><ispartof>International journal of systematic and evolutionary microbiology, 2022-12, Vol.72 (12)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c180t-5db1a3a1ad732c0d2d733d5dd25ce8375f37c31d1517b356ef40894ecceb90f33</cites><orcidid>0000-0003-0014-1690</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,3733,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36748475$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sakdapetsiri, Chatsuda</creatorcontrib><creatorcontrib>Ngaemthao, Wipaporn</creatorcontrib><creatorcontrib>Suriyachadkun, Chanwit</creatorcontrib><creatorcontrib>Pinyakong, Onruthai</creatorcontrib><title>Paeniglutamicibacter quisquiliarum sp. nov., isolated from midden soil waste</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-positive, irregular short-rod and non-motile bacterium, designated strain ABSL32-1
, was isolated from a soil sample collected from the Suphan Buri municipal solid waste disposal area. According to the results of a polyphasic taxonomic study, a novel species belonging to the genus
was described. Strain ABSL32-1
grew optimally at 20-25 °C and at pH 6.0-8.0 in the presence of 1 % (w/v) NaCl. The whole-cell sugars were ribose, mannose and glucose. The peptidoglycan structure contained A4α peptidoglycan (Lys-Glu; A11.54). The polar lipids contained digalactosyldiacylglycerol, diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and two unidentified lipids. The major menaquinones were MK-9 and MK-10. The major cellular fatty acid was anteiso-C
(70.1 %). Based on 16S rRNA gene sequence analysis, strain ABSL32-1
showed the highest similarity to
DSM 20167
(99.5 %), followed by
SPC26
(99.0 %) and
AG31
(98.8 %). The genome of strain ABSL32-1
is 4.4 Mbp with a DNA G+C content of 66.0 mol%. The average nucleotide identity values between strain ABSL32-1
and the type strains
DSM20167
,
SPC26
and
AG31
were 86.6, 74.7 and 83.6 %, respectively. On the basis of phenotypic, chemotaxonomic and genotypic properties, strain ABSL32-1
is proposed to represent a novel species to be named
sp. nov. The type strain is ABSL32-1
(=TBRC 14976
=NBRC 115252
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Peptidoglycan - chemistry</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil - chemistry</subject><subject>Soil Microbiology</subject><subject>Thailand</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kD1PwzAQhi0EoqWwMiKPDCSc469kRBVfUiUYYLYc20Gu4qS1ExD_nkBLh9N7Oj33Dg9ClwRyAlV169fJhRxyAC44OUJzwoTIOFB2fNgLMUNnKa0BpgPAKZpRIVnJJJ-j1at2nf9ox0EHb3ytzeAi3o4-TdN6HceA0ybHXf-Z32Cf-lYPzuIm9gEHb63rcOp9i790Gtw5Oml0m9zFPhfo_eH-bfmUrV4en5d3q8yQEoaM25poqom2khYGbDEltdzaghtXUskbKg0llnAia8qFaxiUFXPGuLqChtIFut71bmK_HV0aVPDJuLbVnevHpAopWSGqkokJzXeoiX1K0TVqE33Q8VsRUL8G1Z9BBWpncHq42nePdXD2gP8roz8EC227</recordid><startdate>202212</startdate><enddate>202212</enddate><creator>Sakdapetsiri, Chatsuda</creator><creator>Ngaemthao, Wipaporn</creator><creator>Suriyachadkun, Chanwit</creator><creator>Pinyakong, Onruthai</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0014-1690</orcidid></search><sort><creationdate>202212</creationdate><title>Paeniglutamicibacter quisquiliarum sp. nov., isolated from midden soil waste</title><author>Sakdapetsiri, Chatsuda ; Ngaemthao, Wipaporn ; Suriyachadkun, Chanwit ; Pinyakong, Onruthai</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c180t-5db1a3a1ad732c0d2d733d5dd25ce8375f37c31d1517b356ef40894ecceb90f33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Peptidoglycan - chemistry</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil - chemistry</topic><topic>Soil Microbiology</topic><topic>Thailand</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sakdapetsiri, Chatsuda</creatorcontrib><creatorcontrib>Ngaemthao, Wipaporn</creatorcontrib><creatorcontrib>Suriyachadkun, Chanwit</creatorcontrib><creatorcontrib>Pinyakong, Onruthai</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sakdapetsiri, Chatsuda</au><au>Ngaemthao, Wipaporn</au><au>Suriyachadkun, Chanwit</au><au>Pinyakong, Onruthai</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paeniglutamicibacter quisquiliarum sp. nov., isolated from midden soil waste</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2022-12</date><risdate>2022</risdate><volume>72</volume><issue>12</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-positive, irregular short-rod and non-motile bacterium, designated strain ABSL32-1
, was isolated from a soil sample collected from the Suphan Buri municipal solid waste disposal area. According to the results of a polyphasic taxonomic study, a novel species belonging to the genus
was described. Strain ABSL32-1
grew optimally at 20-25 °C and at pH 6.0-8.0 in the presence of 1 % (w/v) NaCl. The whole-cell sugars were ribose, mannose and glucose. The peptidoglycan structure contained A4α peptidoglycan (Lys-Glu; A11.54). The polar lipids contained digalactosyldiacylglycerol, diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipids and two unidentified lipids. The major menaquinones were MK-9 and MK-10. The major cellular fatty acid was anteiso-C
(70.1 %). Based on 16S rRNA gene sequence analysis, strain ABSL32-1
showed the highest similarity to
DSM 20167
(99.5 %), followed by
SPC26
(99.0 %) and
AG31
(98.8 %). The genome of strain ABSL32-1
is 4.4 Mbp with a DNA G+C content of 66.0 mol%. The average nucleotide identity values between strain ABSL32-1
and the type strains
DSM20167
,
SPC26
and
AG31
were 86.6, 74.7 and 83.6 %, respectively. On the basis of phenotypic, chemotaxonomic and genotypic properties, strain ABSL32-1
is proposed to represent a novel species to be named
sp. nov. The type strain is ABSL32-1
(=TBRC 14976
=NBRC 115252
).</abstract><cop>England</cop><pmid>36748475</pmid><doi>10.1099/ijsem.0.005651</doi><orcidid>https://orcid.org/0000-0003-0014-1690</orcidid></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Peptidoglycan - chemistry Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil - chemistry Soil Microbiology Thailand |
| title | Paeniglutamicibacter quisquiliarum sp. nov., isolated from midden soil waste |
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