Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction
Sacubitril/valsartan has a noteworthy advantage in improving ventricular remodelling, as well as reducing cardiovascular mortality and the rate of heart failure (HF) readmission. However, clinically, some patients with HF still have low sensitivity to sacubitril/valsartan, indicating sacubitril/vals...
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creator | Su, Jia Hu, Yingchu Cheng, Ji Li, Zhenwei Li, Jiyi Zheng, Nan Zhang, Zhaoxia Yang, Jin Li, Xiaojin Yu, Qinglin Du, Weiping Chen, Xiaomin |
description | Sacubitril/valsartan has a noteworthy advantage in improving ventricular remodelling, as well as reducing cardiovascular mortality and the rate of heart failure (HF) readmission. However, clinically, some patients with HF still have low sensitivity to sacubitril/valsartan, indicating sacubitril/valsartan resistance (SVR). A total of 46 patients with HF after AMI (23 SVR and 23 non-sacubitril/valsartan resistance (NSVR)) were selected. Five SVR and 5 matched NSVR samples were screened for differentially expressed ncRNAs along with mRNAs. A total of 124 differentially expressed miRNAs, 137 circRNAs, 237 lncRNAs and 50 mRNAs were screened by RNA sequencing technology. After quantitative real-time PCR (qRT‒PCR) verification of selected biomarkers in 18 pairs of samples, we found that for patients with SVR, hsa-miR-543, hsa-miR-642b-5p, hsa-miR-760, hsa_circ_0137499, ENST00000474394, ENST00000528337, E2F1, NEAT1, and YTHDF2 were upregulated, and hsa-miR-424-5p, hsa-miR-21-3p, hsa_circRNA_0003275, hsa_circRNA_0004494, hsa_circ_0093522, ENST00000467951, ENST00000558177, ACTA2, ANPEP, and CAMP were downregulated. Then, with the help of our constructed ceRNA network and functional annotation enrichment, we speculated that inflammatory pathways (such as the apelin signalling pathway) and lipid metabolism pathways (such as fatty acid metabolism) may be involved in the regulation of SVR. These discoveries lay a foundation for further mechanistic research and provide a direction for individualized drug administration.
[Display omitted]
•The first determined differentially expressed ncRNAs in the drug sensitivity and heterogeneity of sacubitril/valsartan in HF patients after AMI. |
doi_str_mv | 10.1016/j.ejphar.2023.175547 |
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[Display omitted]
•The first determined differentially expressed ncRNAs in the drug sensitivity and heterogeneity of sacubitril/valsartan in HF patients after AMI.</description><identifier>ISSN: 0014-2999</identifier><identifier>EISSN: 1879-0712</identifier><identifier>DOI: 10.1016/j.ejphar.2023.175547</identifier><identifier>PMID: 36708978</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>ceRNA ; Heart Failure ; Heterogeneity ; Humans ; MicroRNAs - genetics ; Myocardial Infarction ; RNA transcriptome ; RNA, Circular - genetics ; RNA, Messenger - genetics ; Sacubitril/valsartan ; Transcriptome ; Valsartan</subject><ispartof>European journal of pharmacology, 2023-04, Vol.944, p.175547-175547, Article 175547</ispartof><rights>2023</rights><rights>Copyright © 2023. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-f6376377babc91a76fdc8602e5b1ca04877811782c202267dee5a849f6c9c2833</citedby><cites>FETCH-LOGICAL-c362t-f6376377babc91a76fdc8602e5b1ca04877811782c202267dee5a849f6c9c2833</cites><orcidid>0000-0003-2163-2739</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ejphar.2023.175547$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36708978$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Su, Jia</creatorcontrib><creatorcontrib>Hu, Yingchu</creatorcontrib><creatorcontrib>Cheng, Ji</creatorcontrib><creatorcontrib>Li, Zhenwei</creatorcontrib><creatorcontrib>Li, Jiyi</creatorcontrib><creatorcontrib>Zheng, Nan</creatorcontrib><creatorcontrib>Zhang, Zhaoxia</creatorcontrib><creatorcontrib>Yang, Jin</creatorcontrib><creatorcontrib>Li, Xiaojin</creatorcontrib><creatorcontrib>Yu, Qinglin</creatorcontrib><creatorcontrib>Du, Weiping</creatorcontrib><creatorcontrib>Chen, Xiaomin</creatorcontrib><title>Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction</title><title>European journal of pharmacology</title><addtitle>Eur J Pharmacol</addtitle><description>Sacubitril/valsartan has a noteworthy advantage in improving ventricular remodelling, as well as reducing cardiovascular mortality and the rate of heart failure (HF) readmission. However, clinically, some patients with HF still have low sensitivity to sacubitril/valsartan, indicating sacubitril/valsartan resistance (SVR). A total of 46 patients with HF after AMI (23 SVR and 23 non-sacubitril/valsartan resistance (NSVR)) were selected. Five SVR and 5 matched NSVR samples were screened for differentially expressed ncRNAs along with mRNAs. A total of 124 differentially expressed miRNAs, 137 circRNAs, 237 lncRNAs and 50 mRNAs were screened by RNA sequencing technology. After quantitative real-time PCR (qRT‒PCR) verification of selected biomarkers in 18 pairs of samples, we found that for patients with SVR, hsa-miR-543, hsa-miR-642b-5p, hsa-miR-760, hsa_circ_0137499, ENST00000474394, ENST00000528337, E2F1, NEAT1, and YTHDF2 were upregulated, and hsa-miR-424-5p, hsa-miR-21-3p, hsa_circRNA_0003275, hsa_circRNA_0004494, hsa_circ_0093522, ENST00000467951, ENST00000558177, ACTA2, ANPEP, and CAMP were downregulated. Then, with the help of our constructed ceRNA network and functional annotation enrichment, we speculated that inflammatory pathways (such as the apelin signalling pathway) and lipid metabolism pathways (such as fatty acid metabolism) may be involved in the regulation of SVR. These discoveries lay a foundation for further mechanistic research and provide a direction for individualized drug administration.
[Display omitted]
•The first determined differentially expressed ncRNAs in the drug sensitivity and heterogeneity of sacubitril/valsartan in HF patients after AMI.</description><subject>ceRNA</subject><subject>Heart Failure</subject><subject>Heterogeneity</subject><subject>Humans</subject><subject>MicroRNAs - genetics</subject><subject>Myocardial Infarction</subject><subject>RNA transcriptome</subject><subject>RNA, Circular - genetics</subject><subject>RNA, Messenger - genetics</subject><subject>Sacubitril/valsartan</subject><subject>Transcriptome</subject><subject>Valsartan</subject><issn>0014-2999</issn><issn>1879-0712</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kV2L1DAYhYso7rj6D0Ry6U1nk_Qj6Y2wDOsHLAqi1-Ft-tZmbJOapLPOT_XfmNrRSyEQQs7znuScLHvJ6J5RVt8c93icB_B7TnmxZ6KqSvEo2zEpmpwKxh9nO0pZmfOmaa6yZyEcKaVVw6un2VVRCyobIXfZr4ObZo8D2mBOSMDCeA4mENeTOCD5_PGWRA82aG_m6CYk-DPJQzDOktm73owYEtUR7WyIftFxvbnQGlfeYnxw_jsxlgwIPpIezLh4JDNEgzYG8mDiQALopTXRm_HmBGNIQrDrFA8zLtHoBEf07htaNPFMoE8nkpiIZDo7Db4zMCaTHvyfRzzPnvRpDr647NfZ17d3Xw7v8_tP7z4cbu9zXdQ85n1diLREC61uGIi677SsKceqZRpoKYWQjAnJdcqZ16JDrECWTV_rRnNZFNfZ621uiuPHgiGqyQSN4wgW3RIUF4KWQhacJ2m5SbV3IXjs1ezNBP6sGFVrqeqotlLVWqraSk3Yq4vD0k7Y_YP-tpgEbzYBpn-eDHoVdEpWY2c86qg6Z_7v8BvZUrwa</recordid><startdate>20230405</startdate><enddate>20230405</enddate><creator>Su, Jia</creator><creator>Hu, Yingchu</creator><creator>Cheng, Ji</creator><creator>Li, Zhenwei</creator><creator>Li, Jiyi</creator><creator>Zheng, Nan</creator><creator>Zhang, Zhaoxia</creator><creator>Yang, Jin</creator><creator>Li, Xiaojin</creator><creator>Yu, Qinglin</creator><creator>Du, Weiping</creator><creator>Chen, Xiaomin</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-2163-2739</orcidid></search><sort><creationdate>20230405</creationdate><title>Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction</title><author>Su, Jia ; Hu, Yingchu ; Cheng, Ji ; Li, Zhenwei ; Li, Jiyi ; Zheng, Nan ; Zhang, Zhaoxia ; Yang, Jin ; Li, Xiaojin ; Yu, Qinglin ; Du, Weiping ; Chen, Xiaomin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-f6376377babc91a76fdc8602e5b1ca04877811782c202267dee5a849f6c9c2833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>ceRNA</topic><topic>Heart Failure</topic><topic>Heterogeneity</topic><topic>Humans</topic><topic>MicroRNAs - genetics</topic><topic>Myocardial Infarction</topic><topic>RNA transcriptome</topic><topic>RNA, Circular - genetics</topic><topic>RNA, Messenger - genetics</topic><topic>Sacubitril/valsartan</topic><topic>Transcriptome</topic><topic>Valsartan</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Su, Jia</creatorcontrib><creatorcontrib>Hu, Yingchu</creatorcontrib><creatorcontrib>Cheng, Ji</creatorcontrib><creatorcontrib>Li, Zhenwei</creatorcontrib><creatorcontrib>Li, Jiyi</creatorcontrib><creatorcontrib>Zheng, Nan</creatorcontrib><creatorcontrib>Zhang, Zhaoxia</creatorcontrib><creatorcontrib>Yang, Jin</creatorcontrib><creatorcontrib>Li, Xiaojin</creatorcontrib><creatorcontrib>Yu, Qinglin</creatorcontrib><creatorcontrib>Du, Weiping</creatorcontrib><creatorcontrib>Chen, Xiaomin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>European journal of pharmacology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Su, Jia</au><au>Hu, Yingchu</au><au>Cheng, Ji</au><au>Li, Zhenwei</au><au>Li, Jiyi</au><au>Zheng, Nan</au><au>Zhang, Zhaoxia</au><au>Yang, Jin</au><au>Li, Xiaojin</au><au>Yu, Qinglin</au><au>Du, Weiping</au><au>Chen, Xiaomin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction</atitle><jtitle>European journal of pharmacology</jtitle><addtitle>Eur J Pharmacol</addtitle><date>2023-04-05</date><risdate>2023</risdate><volume>944</volume><spage>175547</spage><epage>175547</epage><pages>175547-175547</pages><artnum>175547</artnum><issn>0014-2999</issn><eissn>1879-0712</eissn><abstract>Sacubitril/valsartan has a noteworthy advantage in improving ventricular remodelling, as well as reducing cardiovascular mortality and the rate of heart failure (HF) readmission. However, clinically, some patients with HF still have low sensitivity to sacubitril/valsartan, indicating sacubitril/valsartan resistance (SVR). A total of 46 patients with HF after AMI (23 SVR and 23 non-sacubitril/valsartan resistance (NSVR)) were selected. Five SVR and 5 matched NSVR samples were screened for differentially expressed ncRNAs along with mRNAs. A total of 124 differentially expressed miRNAs, 137 circRNAs, 237 lncRNAs and 50 mRNAs were screened by RNA sequencing technology. After quantitative real-time PCR (qRT‒PCR) verification of selected biomarkers in 18 pairs of samples, we found that for patients with SVR, hsa-miR-543, hsa-miR-642b-5p, hsa-miR-760, hsa_circ_0137499, ENST00000474394, ENST00000528337, E2F1, NEAT1, and YTHDF2 were upregulated, and hsa-miR-424-5p, hsa-miR-21-3p, hsa_circRNA_0003275, hsa_circRNA_0004494, hsa_circ_0093522, ENST00000467951, ENST00000558177, ACTA2, ANPEP, and CAMP were downregulated. Then, with the help of our constructed ceRNA network and functional annotation enrichment, we speculated that inflammatory pathways (such as the apelin signalling pathway) and lipid metabolism pathways (such as fatty acid metabolism) may be involved in the regulation of SVR. These discoveries lay a foundation for further mechanistic research and provide a direction for individualized drug administration.
[Display omitted]
•The first determined differentially expressed ncRNAs in the drug sensitivity and heterogeneity of sacubitril/valsartan in HF patients after AMI.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>36708978</pmid><doi>10.1016/j.ejphar.2023.175547</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-2163-2739</orcidid></addata></record> |
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subjects | ceRNA Heart Failure Heterogeneity Humans MicroRNAs - genetics Myocardial Infarction RNA transcriptome RNA, Circular - genetics RNA, Messenger - genetics Sacubitril/valsartan Transcriptome Valsartan |
title | Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction |
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