Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src

c-Src kinase is a multidomain non-receptor tyrosine kinase that aberrantly phosphorylates several signaling proteins in cancers. Although the structural properties of the regulatory domains (SH3-SH2) and the catalytic kinase domain have been extensively characterized, there is less knowledge about t...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Biomacromolecules 2023-02, Vol.24 (2), p.714-723
Hauptverfasser: Gurumoorthy, Viswanathan, Shrestha, Utsab R., Zhang, Qiu, Pingali, Sai Venkatesh, Boder, Eric T., Urban, Volker S., Smith, Jeremy C., Petridis, Loukas, O’Neill, Hugh
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 723
container_issue 2
container_start_page 714
container_title Biomacromolecules
container_volume 24
creator Gurumoorthy, Viswanathan
Shrestha, Utsab R.
Zhang, Qiu
Pingali, Sai Venkatesh
Boder, Eric T.
Urban, Volker S.
Smith, Jeremy C.
Petridis, Loukas
O’Neill, Hugh
description c-Src kinase is a multidomain non-receptor tyrosine kinase that aberrantly phosphorylates several signaling proteins in cancers. Although the structural properties of the regulatory domains (SH3-SH2) and the catalytic kinase domain have been extensively characterized, there is less knowledge about the N-terminal disordered region (SH4UD) and its interactions with the other c-Src domains. Here, we used domain-selective isotopic labeling combined with the small-angle neutron scattering contrast matching technique to study SH4UD interactions with SH3-SH2. Our results show that in the presence of SH4UD, the radius of gyration (R g) of SH3-SH2 increases, indicating that it has a more extended conformation. Hamiltonian replica exchange molecular dynamics simulations provide a detailed molecular description of the structural changes in SH4UD-SH3-SH2 and show that the regulatory loops of SH3 undergo significant conformational changes in the presence of SH4UD, while SH2 remains largely unchanged. Overall, this study highlights how a disordered region can drive a folded region of a multidomain protein to become flexible, which may be important for allosteric interactions with binding partners. This may help in the design of therapeutic interventions that target the regulatory domains of this important family of kinases.
doi_str_mv 10.1021/acs.biomac.2c01158
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2769373983</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2769373983</sourcerecordid><originalsourceid>FETCH-LOGICAL-a342t-52a0edf6e1781cb13cb0e8258d15922c3eccaa014583469f1db6f414a95f0383</originalsourceid><addsrcrecordid>eNp9kLtOwzAUhi0EouXyAgwoI0uCL7GTjKi0gFRUiXaPHOeYBiUx2MlQsfAKvCJPgtu0jEw-8vn_70gfQlcERwRTciuVi4rKNFJFVGFCeHqExoRTEcYC0-PdzMMkyZIROnPuDWOcsZifohETIqNMxGP0eV85Y0uwUAb3HlW1wXJd6c4F3RqCiWm1sY3sKtPKOpi2DpqihsDo3Xpm6tL3XuC1r2Vn7OaA2O-f-7qryuFr0Srzbk0HflY_X99Lqy7QiZa1g8v9e45Ws-lq8hjOFw9Pk7t5KFlMu5BTiaHUAkiSElUQpgoMKeVpSXhGqWKglJSYxDxlscg0KQuhYxLLjGvMUnaObgasP__Rg-vypnIK6lq2YHqX00RkLGFZynyUDlFljXMWdP5uq0baTU5wvnWee-f54DzfO_el6z2_Lxoo_yoHyT4QDYFt-c301rt0_xF_AdZxkWw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2769373983</pqid></control><display><type>article</type><title>Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src</title><source>MEDLINE</source><source>ACS Publications</source><creator>Gurumoorthy, Viswanathan ; Shrestha, Utsab R. ; Zhang, Qiu ; Pingali, Sai Venkatesh ; Boder, Eric T. ; Urban, Volker S. ; Smith, Jeremy C. ; Petridis, Loukas ; O’Neill, Hugh</creator><creatorcontrib>Gurumoorthy, Viswanathan ; Shrestha, Utsab R. ; Zhang, Qiu ; Pingali, Sai Venkatesh ; Boder, Eric T. ; Urban, Volker S. ; Smith, Jeremy C. ; Petridis, Loukas ; O’Neill, Hugh</creatorcontrib><description>c-Src kinase is a multidomain non-receptor tyrosine kinase that aberrantly phosphorylates several signaling proteins in cancers. Although the structural properties of the regulatory domains (SH3-SH2) and the catalytic kinase domain have been extensively characterized, there is less knowledge about the N-terminal disordered region (SH4UD) and its interactions with the other c-Src domains. Here, we used domain-selective isotopic labeling combined with the small-angle neutron scattering contrast matching technique to study SH4UD interactions with SH3-SH2. Our results show that in the presence of SH4UD, the radius of gyration (R g) of SH3-SH2 increases, indicating that it has a more extended conformation. Hamiltonian replica exchange molecular dynamics simulations provide a detailed molecular description of the structural changes in SH4UD-SH3-SH2 and show that the regulatory loops of SH3 undergo significant conformational changes in the presence of SH4UD, while SH2 remains largely unchanged. Overall, this study highlights how a disordered region can drive a folded region of a multidomain protein to become flexible, which may be important for allosteric interactions with binding partners. This may help in the design of therapeutic interventions that target the regulatory domains of this important family of kinases.</description><identifier>ISSN: 1525-7797</identifier><identifier>EISSN: 1526-4602</identifier><identifier>DOI: 10.1021/acs.biomac.2c01158</identifier><identifier>PMID: 36692364</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Catalytic Domain ; Molecular Dynamics Simulation ; Protein Domains ; Proto-Oncogene Proteins pp60(c-src)</subject><ispartof>Biomacromolecules, 2023-02, Vol.24 (2), p.714-723</ispartof><rights>2023 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a342t-52a0edf6e1781cb13cb0e8258d15922c3eccaa014583469f1db6f414a95f0383</citedby><cites>FETCH-LOGICAL-a342t-52a0edf6e1781cb13cb0e8258d15922c3eccaa014583469f1db6f414a95f0383</cites><orcidid>0000-0001-8569-060X ; 0000-0001-6985-6657 ; 0000-0001-7961-4176 ; 0000-0002-7464-8147 ; 0000-0003-2966-5527 ; 0000-0003-4095-5680 ; 0000-0002-7962-3408 ; 0000-0002-2978-3227</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.biomac.2c01158$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.biomac.2c01158$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>315,782,786,2769,27085,27933,27934,56747,56797</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36692364$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gurumoorthy, Viswanathan</creatorcontrib><creatorcontrib>Shrestha, Utsab R.</creatorcontrib><creatorcontrib>Zhang, Qiu</creatorcontrib><creatorcontrib>Pingali, Sai Venkatesh</creatorcontrib><creatorcontrib>Boder, Eric T.</creatorcontrib><creatorcontrib>Urban, Volker S.</creatorcontrib><creatorcontrib>Smith, Jeremy C.</creatorcontrib><creatorcontrib>Petridis, Loukas</creatorcontrib><creatorcontrib>O’Neill, Hugh</creatorcontrib><title>Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src</title><title>Biomacromolecules</title><addtitle>Biomacromolecules</addtitle><description>c-Src kinase is a multidomain non-receptor tyrosine kinase that aberrantly phosphorylates several signaling proteins in cancers. Although the structural properties of the regulatory domains (SH3-SH2) and the catalytic kinase domain have been extensively characterized, there is less knowledge about the N-terminal disordered region (SH4UD) and its interactions with the other c-Src domains. Here, we used domain-selective isotopic labeling combined with the small-angle neutron scattering contrast matching technique to study SH4UD interactions with SH3-SH2. Our results show that in the presence of SH4UD, the radius of gyration (R g) of SH3-SH2 increases, indicating that it has a more extended conformation. Hamiltonian replica exchange molecular dynamics simulations provide a detailed molecular description of the structural changes in SH4UD-SH3-SH2 and show that the regulatory loops of SH3 undergo significant conformational changes in the presence of SH4UD, while SH2 remains largely unchanged. Overall, this study highlights how a disordered region can drive a folded region of a multidomain protein to become flexible, which may be important for allosteric interactions with binding partners. This may help in the design of therapeutic interventions that target the regulatory domains of this important family of kinases.</description><subject>Catalytic Domain</subject><subject>Molecular Dynamics Simulation</subject><subject>Protein Domains</subject><subject>Proto-Oncogene Proteins pp60(c-src)</subject><issn>1525-7797</issn><issn>1526-4602</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kLtOwzAUhi0EouXyAgwoI0uCL7GTjKi0gFRUiXaPHOeYBiUx2MlQsfAKvCJPgtu0jEw-8vn_70gfQlcERwRTciuVi4rKNFJFVGFCeHqExoRTEcYC0-PdzMMkyZIROnPuDWOcsZifohETIqNMxGP0eV85Y0uwUAb3HlW1wXJd6c4F3RqCiWm1sY3sKtPKOpi2DpqihsDo3Xpm6tL3XuC1r2Vn7OaA2O-f-7qryuFr0Srzbk0HflY_X99Lqy7QiZa1g8v9e45Ws-lq8hjOFw9Pk7t5KFlMu5BTiaHUAkiSElUQpgoMKeVpSXhGqWKglJSYxDxlscg0KQuhYxLLjGvMUnaObgasP__Rg-vypnIK6lq2YHqX00RkLGFZynyUDlFljXMWdP5uq0baTU5wvnWee-f54DzfO_el6z2_Lxoo_yoHyT4QDYFt-c301rt0_xF_AdZxkWw</recordid><startdate>20230213</startdate><enddate>20230213</enddate><creator>Gurumoorthy, Viswanathan</creator><creator>Shrestha, Utsab R.</creator><creator>Zhang, Qiu</creator><creator>Pingali, Sai Venkatesh</creator><creator>Boder, Eric T.</creator><creator>Urban, Volker S.</creator><creator>Smith, Jeremy C.</creator><creator>Petridis, Loukas</creator><creator>O’Neill, Hugh</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-8569-060X</orcidid><orcidid>https://orcid.org/0000-0001-6985-6657</orcidid><orcidid>https://orcid.org/0000-0001-7961-4176</orcidid><orcidid>https://orcid.org/0000-0002-7464-8147</orcidid><orcidid>https://orcid.org/0000-0003-2966-5527</orcidid><orcidid>https://orcid.org/0000-0003-4095-5680</orcidid><orcidid>https://orcid.org/0000-0002-7962-3408</orcidid><orcidid>https://orcid.org/0000-0002-2978-3227</orcidid></search><sort><creationdate>20230213</creationdate><title>Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src</title><author>Gurumoorthy, Viswanathan ; Shrestha, Utsab R. ; Zhang, Qiu ; Pingali, Sai Venkatesh ; Boder, Eric T. ; Urban, Volker S. ; Smith, Jeremy C. ; Petridis, Loukas ; O’Neill, Hugh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a342t-52a0edf6e1781cb13cb0e8258d15922c3eccaa014583469f1db6f414a95f0383</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Catalytic Domain</topic><topic>Molecular Dynamics Simulation</topic><topic>Protein Domains</topic><topic>Proto-Oncogene Proteins pp60(c-src)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gurumoorthy, Viswanathan</creatorcontrib><creatorcontrib>Shrestha, Utsab R.</creatorcontrib><creatorcontrib>Zhang, Qiu</creatorcontrib><creatorcontrib>Pingali, Sai Venkatesh</creatorcontrib><creatorcontrib>Boder, Eric T.</creatorcontrib><creatorcontrib>Urban, Volker S.</creatorcontrib><creatorcontrib>Smith, Jeremy C.</creatorcontrib><creatorcontrib>Petridis, Loukas</creatorcontrib><creatorcontrib>O’Neill, Hugh</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biomacromolecules</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gurumoorthy, Viswanathan</au><au>Shrestha, Utsab R.</au><au>Zhang, Qiu</au><au>Pingali, Sai Venkatesh</au><au>Boder, Eric T.</au><au>Urban, Volker S.</au><au>Smith, Jeremy C.</au><au>Petridis, Loukas</au><au>O’Neill, Hugh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src</atitle><jtitle>Biomacromolecules</jtitle><addtitle>Biomacromolecules</addtitle><date>2023-02-13</date><risdate>2023</risdate><volume>24</volume><issue>2</issue><spage>714</spage><epage>723</epage><pages>714-723</pages><issn>1525-7797</issn><eissn>1526-4602</eissn><abstract>c-Src kinase is a multidomain non-receptor tyrosine kinase that aberrantly phosphorylates several signaling proteins in cancers. Although the structural properties of the regulatory domains (SH3-SH2) and the catalytic kinase domain have been extensively characterized, there is less knowledge about the N-terminal disordered region (SH4UD) and its interactions with the other c-Src domains. Here, we used domain-selective isotopic labeling combined with the small-angle neutron scattering contrast matching technique to study SH4UD interactions with SH3-SH2. Our results show that in the presence of SH4UD, the radius of gyration (R g) of SH3-SH2 increases, indicating that it has a more extended conformation. Hamiltonian replica exchange molecular dynamics simulations provide a detailed molecular description of the structural changes in SH4UD-SH3-SH2 and show that the regulatory loops of SH3 undergo significant conformational changes in the presence of SH4UD, while SH2 remains largely unchanged. Overall, this study highlights how a disordered region can drive a folded region of a multidomain protein to become flexible, which may be important for allosteric interactions with binding partners. This may help in the design of therapeutic interventions that target the regulatory domains of this important family of kinases.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>36692364</pmid><doi>10.1021/acs.biomac.2c01158</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-8569-060X</orcidid><orcidid>https://orcid.org/0000-0001-6985-6657</orcidid><orcidid>https://orcid.org/0000-0001-7961-4176</orcidid><orcidid>https://orcid.org/0000-0002-7464-8147</orcidid><orcidid>https://orcid.org/0000-0003-2966-5527</orcidid><orcidid>https://orcid.org/0000-0003-4095-5680</orcidid><orcidid>https://orcid.org/0000-0002-7962-3408</orcidid><orcidid>https://orcid.org/0000-0002-2978-3227</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 1525-7797
ispartof Biomacromolecules, 2023-02, Vol.24 (2), p.714-723
issn 1525-7797
1526-4602
language eng
recordid cdi_proquest_miscellaneous_2769373983
source MEDLINE; ACS Publications
subjects Catalytic Domain
Molecular Dynamics Simulation
Protein Domains
Proto-Oncogene Proteins pp60(c-src)
title Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c‑Src
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-01T21%3A00%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Disordered%20Domain%20Shifts%20the%20Conformational%20Ensemble%20of%20the%20Folded%20Regulatory%20Domain%20of%20the%20Multidomain%20Oncoprotein%20c%E2%80%91Src&rft.jtitle=Biomacromolecules&rft.au=Gurumoorthy,%20Viswanathan&rft.date=2023-02-13&rft.volume=24&rft.issue=2&rft.spage=714&rft.epage=723&rft.pages=714-723&rft.issn=1525-7797&rft.eissn=1526-4602&rft_id=info:doi/10.1021/acs.biomac.2c01158&rft_dat=%3Cproquest_cross%3E2769373983%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2769373983&rft_id=info:pmid/36692364&rfr_iscdi=true