Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis
The complete genome sequence of a new potyvirus from Paris polyphylla var. yunnanensis was determined. Its genomic RNA consists of 9571 nucleotides (nt), excluding the 3’-terminal poly(A) tail, containing the typical open reading frame (ORF) of potyviruses and encoding a putative large polyprotein o...
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| Veröffentlicht in: | Archives of virology 2023-02, Vol.168 (2), p.43-43, Article 43 |
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| creator | Zhang, Boxin Li, Qiannan Hu, Jingyu Zhang, Lei Dong, Xian Ji, Pengzhang Dong, Jiahong |
| description | The complete genome sequence of a new potyvirus from
Paris polyphylla
var.
yunnanensis
was determined. Its genomic RNA consists of 9571 nucleotides (nt), excluding the 3’-terminal poly(A) tail, containing the typical open reading frame (ORF) of potyviruses and encoding a putative large polyprotein of 3061 amino acids. The virus shares 54.20%-59.60% nt sequence identity and 51.80%-57.90% amino acid sequence identity with other potyviruses. Proteolytic cleavage sites and conserved motifs of potyviruses were identified in the polyprotein and within individual proteins. Phylogenetic analysis indicated that the virus was most closely related to lily yellow mosaic virus. The results suggest that the virus should be classified as a member of a novel species within the genus
Potyvirus
, and we have tentatively named this virus “Paris yunnanensis mosaic chlorotic virus” (PyMCV). |
| doi_str_mv | 10.1007/s00705-022-05655-9 |
| format | Article |
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Paris polyphylla
var.
yunnanensis
was determined. Its genomic RNA consists of 9571 nucleotides (nt), excluding the 3’-terminal poly(A) tail, containing the typical open reading frame (ORF) of potyviruses and encoding a putative large polyprotein of 3061 amino acids. The virus shares 54.20%-59.60% nt sequence identity and 51.80%-57.90% amino acid sequence identity with other potyviruses. Proteolytic cleavage sites and conserved motifs of potyviruses were identified in the polyprotein and within individual proteins. Phylogenetic analysis indicated that the virus was most closely related to lily yellow mosaic virus. The results suggest that the virus should be classified as a member of a novel species within the genus
Potyvirus
, and we have tentatively named this virus “Paris yunnanensis mosaic chlorotic virus” (PyMCV).</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-022-05655-9</identifier><identifier>PMID: 36609602</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Amino acid sequence ; Amino acids ; Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Conserved sequence ; Genome, Viral ; Genomes ; Infectious Diseases ; Liliaceae - genetics ; Medical Microbiology ; Medicine ; Melanthiaceae ; Nucleotide sequence ; Nucleotides ; Open Reading Frames ; Paris polyphylla ; Phylogenetics ; Phylogeny ; Plant Diseases ; Plant viruses ; Polyadenylation ; Polyproteins - genetics ; Potyvirus ; Proteins ; Proteolysis ; RNA, Viral - genetics ; Sequence Analysis ; Virology ; Viruses</subject><ispartof>Archives of virology, 2023-02, Vol.168 (2), p.43-43, Article 43</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c419t-c25901c7451e084cd83586c90297424f817543fae750fb8b772e6028a8fc2ff93</citedby><cites>FETCH-LOGICAL-c419t-c25901c7451e084cd83586c90297424f817543fae750fb8b772e6028a8fc2ff93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-022-05655-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-022-05655-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36609602$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Boxin</creatorcontrib><creatorcontrib>Li, Qiannan</creatorcontrib><creatorcontrib>Hu, Jingyu</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Dong, Xian</creatorcontrib><creatorcontrib>Ji, Pengzhang</creatorcontrib><creatorcontrib>Dong, Jiahong</creatorcontrib><title>Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The complete genome sequence of a new potyvirus from
Paris polyphylla
var.
yunnanensis
was determined. Its genomic RNA consists of 9571 nucleotides (nt), excluding the 3’-terminal poly(A) tail, containing the typical open reading frame (ORF) of potyviruses and encoding a putative large polyprotein of 3061 amino acids. The virus shares 54.20%-59.60% nt sequence identity and 51.80%-57.90% amino acid sequence identity with other potyviruses. Proteolytic cleavage sites and conserved motifs of potyviruses were identified in the polyprotein and within individual proteins. Phylogenetic analysis indicated that the virus was most closely related to lily yellow mosaic virus. The results suggest that the virus should be classified as a member of a novel species within the genus
Potyvirus
, and we have tentatively named this virus “Paris yunnanensis mosaic chlorotic virus” (PyMCV).</description><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Conserved sequence</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Liliaceae - genetics</subject><subject>Medical Microbiology</subject><subject>Medicine</subject><subject>Melanthiaceae</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Open Reading Frames</subject><subject>Paris polyphylla</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Diseases</subject><subject>Plant viruses</subject><subject>Polyadenylation</subject><subject>Polyproteins - genetics</subject><subject>Potyvirus</subject><subject>Proteins</subject><subject>Proteolysis</subject><subject>RNA, Viral - genetics</subject><subject>Sequence Analysis</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9vFSEUxYnR2Gf1C7gwJG7cTL0wwMDSvPinSZO6sGvC413qNDMwwkyb-falnaqJCzeQcH-ce889hLxlcMYAuo-lHiAb4LwBqaRszDOyY6Llje6Mfk520IJotAJ9Ql6VcgNQH1r5kpy0SoFRwHfkuE_jNOCM9BpjGpEW_LVg9EhddMNa-kJToI5GvKNTmtfbPi-F9iUNbsYjDTmN9LvLFZvSsE4_12Fw9NblM7ouMbqIsUq8Ji-CGwq-ebpPydWXzz_235qLy6_n-08XjRfMzI3n0gDznZAMQQt_1K3UyhvgphNcBM06KdrgsJMQDvrQdRyrCe108DwE056SD5vulFN1UWY79sVjHSliWorlnWJGK26gou__QW_SkqvljVKC1yaV4hvlcyolY7BT7keXV8vAPmRgtwxszcA-ZmAfpnj3JL0cRjz--fJ76RVoN6DUUrzG_Lf3f2TvAWYDkZM</recordid><startdate>20230201</startdate><enddate>20230201</enddate><creator>Zhang, Boxin</creator><creator>Li, Qiannan</creator><creator>Hu, Jingyu</creator><creator>Zhang, Lei</creator><creator>Dong, Xian</creator><creator>Ji, Pengzhang</creator><creator>Dong, Jiahong</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20230201</creationdate><title>Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis</title><author>Zhang, Boxin ; Li, Qiannan ; Hu, Jingyu ; Zhang, Lei ; Dong, Xian ; Ji, Pengzhang ; Dong, Jiahong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-c25901c7451e084cd83586c90297424f817543fae750fb8b772e6028a8fc2ff93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Annotated Sequence Record</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Conserved sequence</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Liliaceae - genetics</topic><topic>Medical Microbiology</topic><topic>Medicine</topic><topic>Melanthiaceae</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Open Reading Frames</topic><topic>Paris polyphylla</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Diseases</topic><topic>Plant viruses</topic><topic>Polyadenylation</topic><topic>Polyproteins - genetics</topic><topic>Potyvirus</topic><topic>Proteins</topic><topic>Proteolysis</topic><topic>RNA, Viral - genetics</topic><topic>Sequence Analysis</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Boxin</creatorcontrib><creatorcontrib>Li, Qiannan</creatorcontrib><creatorcontrib>Hu, Jingyu</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Dong, Xian</creatorcontrib><creatorcontrib>Ji, Pengzhang</creatorcontrib><creatorcontrib>Dong, Jiahong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Boxin</au><au>Li, Qiannan</au><au>Hu, Jingyu</au><au>Zhang, Lei</au><au>Dong, Xian</au><au>Ji, Pengzhang</au><au>Dong, Jiahong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2023-02-01</date><risdate>2023</risdate><volume>168</volume><issue>2</issue><spage>43</spage><epage>43</epage><pages>43-43</pages><artnum>43</artnum><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The complete genome sequence of a new potyvirus from
Paris polyphylla
var.
yunnanensis
was determined. Its genomic RNA consists of 9571 nucleotides (nt), excluding the 3’-terminal poly(A) tail, containing the typical open reading frame (ORF) of potyviruses and encoding a putative large polyprotein of 3061 amino acids. The virus shares 54.20%-59.60% nt sequence identity and 51.80%-57.90% amino acid sequence identity with other potyviruses. Proteolytic cleavage sites and conserved motifs of potyviruses were identified in the polyprotein and within individual proteins. Phylogenetic analysis indicated that the virus was most closely related to lily yellow mosaic virus. The results suggest that the virus should be classified as a member of a novel species within the genus
Potyvirus
, and we have tentatively named this virus “Paris yunnanensis mosaic chlorotic virus” (PyMCV).</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>36609602</pmid><doi>10.1007/s00705-022-05655-9</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| issn | 0304-8608 1432-8798 |
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| subjects | Amino acid sequence Amino acids Annotated Sequence Record Biomedical and Life Sciences Biomedicine Conserved sequence Genome, Viral Genomes Infectious Diseases Liliaceae - genetics Medical Microbiology Medicine Melanthiaceae Nucleotide sequence Nucleotides Open Reading Frames Paris polyphylla Phylogenetics Phylogeny Plant Diseases Plant viruses Polyadenylation Polyproteins - genetics Potyvirus Proteins Proteolysis RNA, Viral - genetics Sequence Analysis Virology Viruses |
| title | Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis |
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