Complete genome sequence of polygonatum mosaic-associated virus 1, a novel member of the genus Potyvirus in China
The complete genome sequence of a putative novel potyvirus, tentatively named “polygonatum mosaic-associated virus 1” (PMaV1), was sequenced from naturally infected Polygonatum cyrtonema Hua in China. PMaV1 has a typical genome organization of potyviruses with a single large open reading frame (nt 1...
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| Veröffentlicht in: | Archives of virology 2023-02, Vol.168 (2), p.42-42, Article 42 |
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| creator | Li, Qiannan Zhang, Boxin Hu, Jingyu Zhang, Lei Ji, Pengzhang Dong, Jiahong |
| description | The complete genome sequence of a putative novel potyvirus, tentatively named “polygonatum mosaic-associated virus 1” (PMaV1), was sequenced from naturally infected
Polygonatum cyrtonema
Hua in China. PMaV1 has a typical genome organization of potyviruses with a single large open reading frame (nt 119–9448) that encodes a 3109-aa polyprotein that is predicted to be cleaved into 10 mature proteins by virus-encoded proteases. Pairwise comparisons revealed that PMaV1 shares 71.50% complete genome sequence identity with Polygonatum kingianum virus 4 and 80.00% amino acid sequence identity with Polygonatum kingianum virus 3 of the genus
Potyvirus
. Phylogenetic analysis indicated that PMaV1 clustered with other potyviruses and that it was most closely related to Polygonatum kingianum virus 3 and Polygonatum kingianum virus 4. These results suggest that PMaV1 is a new member of the genus
Potyvirus
of the family
Potyviridae
(Nucleotide sequence data reported are available in the GenBank databases under the accession number OP380926)
. |
| doi_str_mv | 10.1007/s00705-022-05665-7 |
| format | Article |
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Polygonatum cyrtonema
Hua in China. PMaV1 has a typical genome organization of potyviruses with a single large open reading frame (nt 119–9448) that encodes a 3109-aa polyprotein that is predicted to be cleaved into 10 mature proteins by virus-encoded proteases. Pairwise comparisons revealed that PMaV1 shares 71.50% complete genome sequence identity with Polygonatum kingianum virus 4 and 80.00% amino acid sequence identity with Polygonatum kingianum virus 3 of the genus
Potyvirus
. Phylogenetic analysis indicated that PMaV1 clustered with other potyviruses and that it was most closely related to Polygonatum kingianum virus 3 and Polygonatum kingianum virus 4. These results suggest that PMaV1 is a new member of the genus
Potyvirus
of the family
Potyviridae
(Nucleotide sequence data reported are available in the GenBank databases under the accession number OP380926)
.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-022-05665-7</identifier><identifier>PMID: 36609607</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Amino acid sequence ; Amino acids ; Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Genome, Viral ; Genomes ; Herbal medicine ; Infectious Diseases ; Medical Microbiology ; Medicine ; Nucleotide sequence ; Open Reading Frames ; Phylogenetics ; Phylogeny ; Plant Diseases ; Plant viruses ; Polygonatum ; Potyviridae - genetics ; Potyvirus ; Potyvirus - genetics ; RNA, Viral - genetics ; Viral infections ; Virology ; Viruses</subject><ispartof>Archives of virology, 2023-02, Vol.168 (2), p.42-42, Article 42</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-396aba45d74445cece3860a570c735f4cadaef01dc82e9066a11c80e2fb447cf3</citedby><cites>FETCH-LOGICAL-c375t-396aba45d74445cece3860a570c735f4cadaef01dc82e9066a11c80e2fb447cf3</cites><orcidid>0000-0002-8067-4691</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-022-05665-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-022-05665-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36609607$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Qiannan</creatorcontrib><creatorcontrib>Zhang, Boxin</creatorcontrib><creatorcontrib>Hu, Jingyu</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Ji, Pengzhang</creatorcontrib><creatorcontrib>Dong, Jiahong</creatorcontrib><title>Complete genome sequence of polygonatum mosaic-associated virus 1, a novel member of the genus Potyvirus in China</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The complete genome sequence of a putative novel potyvirus, tentatively named “polygonatum mosaic-associated virus 1” (PMaV1), was sequenced from naturally infected
Polygonatum cyrtonema
Hua in China. PMaV1 has a typical genome organization of potyviruses with a single large open reading frame (nt 119–9448) that encodes a 3109-aa polyprotein that is predicted to be cleaved into 10 mature proteins by virus-encoded proteases. Pairwise comparisons revealed that PMaV1 shares 71.50% complete genome sequence identity with Polygonatum kingianum virus 4 and 80.00% amino acid sequence identity with Polygonatum kingianum virus 3 of the genus
Potyvirus
. Phylogenetic analysis indicated that PMaV1 clustered with other potyviruses and that it was most closely related to Polygonatum kingianum virus 3 and Polygonatum kingianum virus 4. These results suggest that PMaV1 is a new member of the genus
Potyvirus
of the family
Potyviridae
(Nucleotide sequence data reported are available in the GenBank databases under the accession number OP380926)
.</description><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Medicine</subject><subject>Nucleotide sequence</subject><subject>Open Reading Frames</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Diseases</subject><subject>Plant viruses</subject><subject>Polygonatum</subject><subject>Potyviridae - genetics</subject><subject>Potyvirus</subject><subject>Potyvirus - genetics</subject><subject>RNA, Viral - genetics</subject><subject>Viral infections</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9v1DAQxS0EokvhC3BAlrhwwDCO_yVHtKIFqRI9lLPldSbbVLG9tZNK--1xNwUkDhw8ljy_9zyjR8hbDp84gPlcagHFoGkYKK0VM8_IhkvRsNZ07XOyAQGStRraM_KqlDuA-iDUS3ImtIZOg9mQ-20KhwlnpHuMKSAteL9g9EjTQA9pOu5TdPMSaEjFjZ65UpIf3Yw9fRjzUij_SB2N6QEnGjDsMD8K59uTX21fp_m4gmOk29sxutfkxeCmgm-e7nPy8-LrzfYbu_px-X375Yp5YdTMRKfdzknVGyml8uhR1E2cMuCNUIP0rnc4AO9922AHWjvOfQvYDDspjR_EOfmw-h5yqiuV2YaxeJwmFzEtxTZG866tR1f0_T_oXVpyrNOdKC2F0W2lmpXyOZWScbCHPAaXj5aDfQzEroHYGog9BWJNFb17sl52Afs_kt8JVECsQKmtuMf89-__2P4CVnSWxw</recordid><startdate>20230201</startdate><enddate>20230201</enddate><creator>Li, Qiannan</creator><creator>Zhang, Boxin</creator><creator>Hu, Jingyu</creator><creator>Zhang, Lei</creator><creator>Ji, Pengzhang</creator><creator>Dong, Jiahong</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8067-4691</orcidid></search><sort><creationdate>20230201</creationdate><title>Complete genome sequence of polygonatum mosaic-associated virus 1, a novel member of the genus Potyvirus in China</title><author>Li, Qiannan ; Zhang, Boxin ; Hu, Jingyu ; Zhang, Lei ; Ji, Pengzhang ; Dong, Jiahong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-396aba45d74445cece3860a570c735f4cadaef01dc82e9066a11c80e2fb447cf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Annotated Sequence Record</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Medicine</topic><topic>Nucleotide sequence</topic><topic>Open Reading Frames</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Diseases</topic><topic>Plant viruses</topic><topic>Polygonatum</topic><topic>Potyviridae - genetics</topic><topic>Potyvirus</topic><topic>Potyvirus - genetics</topic><topic>RNA, Viral - genetics</topic><topic>Viral infections</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Qiannan</creatorcontrib><creatorcontrib>Zhang, Boxin</creatorcontrib><creatorcontrib>Hu, Jingyu</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Ji, Pengzhang</creatorcontrib><creatorcontrib>Dong, Jiahong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Qiannan</au><au>Zhang, Boxin</au><au>Hu, Jingyu</au><au>Zhang, Lei</au><au>Ji, Pengzhang</au><au>Dong, Jiahong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence of polygonatum mosaic-associated virus 1, a novel member of the genus Potyvirus in China</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2023-02-01</date><risdate>2023</risdate><volume>168</volume><issue>2</issue><spage>42</spage><epage>42</epage><pages>42-42</pages><artnum>42</artnum><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The complete genome sequence of a putative novel potyvirus, tentatively named “polygonatum mosaic-associated virus 1” (PMaV1), was sequenced from naturally infected
Polygonatum cyrtonema
Hua in China. PMaV1 has a typical genome organization of potyviruses with a single large open reading frame (nt 119–9448) that encodes a 3109-aa polyprotein that is predicted to be cleaved into 10 mature proteins by virus-encoded proteases. Pairwise comparisons revealed that PMaV1 shares 71.50% complete genome sequence identity with Polygonatum kingianum virus 4 and 80.00% amino acid sequence identity with Polygonatum kingianum virus 3 of the genus
Potyvirus
. Phylogenetic analysis indicated that PMaV1 clustered with other potyviruses and that it was most closely related to Polygonatum kingianum virus 3 and Polygonatum kingianum virus 4. These results suggest that PMaV1 is a new member of the genus
Potyvirus
of the family
Potyviridae
(Nucleotide sequence data reported are available in the GenBank databases under the accession number OP380926)
.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>36609607</pmid><doi>10.1007/s00705-022-05665-7</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-8067-4691</orcidid></addata></record> |
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| subjects | Amino acid sequence Amino acids Annotated Sequence Record Biomedical and Life Sciences Biomedicine Genome, Viral Genomes Herbal medicine Infectious Diseases Medical Microbiology Medicine Nucleotide sequence Open Reading Frames Phylogenetics Phylogeny Plant Diseases Plant viruses Polygonatum Potyviridae - genetics Potyvirus Potyvirus - genetics RNA, Viral - genetics Viral infections Virology Viruses |
| title | Complete genome sequence of polygonatum mosaic-associated virus 1, a novel member of the genus Potyvirus in China |
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