A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development
This work presents a novel parametrization for the ReaxFF formalism as a means to investigate reaction processes of chlorinated organic compounds. Force field parameters cover the chemical elements C, H, O, Cl and were obtained using a novel optimization approach involving relaxed potential energy s...
Gespeichert in:
Veröffentlicht in: | Chemphyschem 2023-04, Vol.24 (8), p.e202200786-n/a |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | n/a |
---|---|
container_issue | 8 |
container_start_page | e202200786 |
container_title | Chemphyschem |
container_volume | 24 |
creator | Komissarov, Leonid Krep, Lukas Schmalz, Felix Kopp, Wassja A. Leonhard, Kai Verstraelen, Toon |
description | This work presents a novel parametrization for the ReaxFF formalism as a means to investigate reaction processes of chlorinated organic compounds. Force field parameters cover the chemical elements C, H, O, Cl and were obtained using a novel optimization approach involving relaxed potential energy surface scans as training targets. The resulting ReaxFF parametrization shows good transferability, as demonstrated on two independent ab initio validation sets. While this first part of our two‐paper series focuses on force field parametrization, we apply our parameters to the simulation of chlorinated dibenzofuran formation and decomposition processes in Part II.
The authors propose, apply and validate a novel approach to the fitting of force field parameters, resulting in a smoother representation of the potential energy surface when compared to more conventional parametrization methods. |
doi_str_mv | 10.1002/cphc.202200786 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2759962422</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2801884022</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4136-3d47a2062593f943b884d6c2d72af28cac8445de03e5ea44a981a7170fc807903</originalsourceid><addsrcrecordid>eNqFkU1P3DAQhq2KqsDSK8fKEhcuux1_JHF6Q9kuIFGBaHu2jD2BICdO7YRq_z1ZdgGpl548h2ee8cxLyDGDBQPgX23_YBccOAcoVP6BHDApynmRS7a3qyUX2T45TOkRABQU7BPZF3mmMqHkAcEzeovGDs0T0h_Box29iXS57kzb2ER_DqNb01DT6sGH2HRmQEev473pGkur0PZh7Fxa0BsTB3r5ja5CtEhXDXpHl_iEPvQtdsMR-Vgbn_Dz7p2R36vvv6qL-dX1-WV1djW3kol8LpwsDIecZ6WoSynulJIut9wV3NRcWWOVlJlDEJihkdKUipmCFVDbabESxIycbr19DH9GTINum2TRe9NhGJPmRVaWOZecT-jJP-hjGGM3_U5zBWyaDC_UYkvZGFKKWOs-Nq2Ja81AbwLQmwD0WwBTw5eddrxr0b3hrxefgHIL_G08rv-j09XNRfUufwb-3pAe</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2801884022</pqid></control><display><type>article</type><title>A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development</title><source>Wiley Online Library Journals Frontfile Complete</source><creator>Komissarov, Leonid ; Krep, Lukas ; Schmalz, Felix ; Kopp, Wassja A. ; Leonhard, Kai ; Verstraelen, Toon</creator><creatorcontrib>Komissarov, Leonid ; Krep, Lukas ; Schmalz, Felix ; Kopp, Wassja A. ; Leonhard, Kai ; Verstraelen, Toon</creatorcontrib><description>This work presents a novel parametrization for the ReaxFF formalism as a means to investigate reaction processes of chlorinated organic compounds. Force field parameters cover the chemical elements C, H, O, Cl and were obtained using a novel optimization approach involving relaxed potential energy surface scans as training targets. The resulting ReaxFF parametrization shows good transferability, as demonstrated on two independent ab initio validation sets. While this first part of our two‐paper series focuses on force field parametrization, we apply our parameters to the simulation of chlorinated dibenzofuran formation and decomposition processes in Part II.
The authors propose, apply and validate a novel approach to the fitting of force field parameters, resulting in a smoother representation of the potential energy surface when compared to more conventional parametrization methods.</description><identifier>ISSN: 1439-4235</identifier><identifier>EISSN: 1439-7641</identifier><identifier>DOI: 10.1002/cphc.202200786</identifier><identifier>PMID: 36585384</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Chemical elements ; chemTraYzer ; chlorinated organic compounds ; Chlorination ; Molecular dynamics ; Optimization ; Organic compounds ; Parameterization ; Parameters ; parametrization ; parAMS ; Potential energy ; reactive force fields</subject><ispartof>Chemphyschem, 2023-04, Vol.24 (8), p.e202200786-n/a</ispartof><rights>2022 Wiley‐VCH GmbH</rights><rights>2022 Wiley-VCH GmbH.</rights><rights>2023 Wiley‐VCH GmbH</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4136-3d47a2062593f943b884d6c2d72af28cac8445de03e5ea44a981a7170fc807903</citedby><cites>FETCH-LOGICAL-c4136-3d47a2062593f943b884d6c2d72af28cac8445de03e5ea44a981a7170fc807903</cites><orcidid>0000-0001-9288-5608 ; 0000-0001-6231-6957 ; 0000-0001-8147-3464 ; 0000-0001-9032-628X ; 0000-0002-2570-7454 ; 0000-0001-6011-1632</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcphc.202200786$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcphc.202200786$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36585384$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Komissarov, Leonid</creatorcontrib><creatorcontrib>Krep, Lukas</creatorcontrib><creatorcontrib>Schmalz, Felix</creatorcontrib><creatorcontrib>Kopp, Wassja A.</creatorcontrib><creatorcontrib>Leonhard, Kai</creatorcontrib><creatorcontrib>Verstraelen, Toon</creatorcontrib><title>A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development</title><title>Chemphyschem</title><addtitle>Chemphyschem</addtitle><description>This work presents a novel parametrization for the ReaxFF formalism as a means to investigate reaction processes of chlorinated organic compounds. Force field parameters cover the chemical elements C, H, O, Cl and were obtained using a novel optimization approach involving relaxed potential energy surface scans as training targets. The resulting ReaxFF parametrization shows good transferability, as demonstrated on two independent ab initio validation sets. While this first part of our two‐paper series focuses on force field parametrization, we apply our parameters to the simulation of chlorinated dibenzofuran formation and decomposition processes in Part II.
The authors propose, apply and validate a novel approach to the fitting of force field parameters, resulting in a smoother representation of the potential energy surface when compared to more conventional parametrization methods.</description><subject>Chemical elements</subject><subject>chemTraYzer</subject><subject>chlorinated organic compounds</subject><subject>Chlorination</subject><subject>Molecular dynamics</subject><subject>Optimization</subject><subject>Organic compounds</subject><subject>Parameterization</subject><subject>Parameters</subject><subject>parametrization</subject><subject>parAMS</subject><subject>Potential energy</subject><subject>reactive force fields</subject><issn>1439-4235</issn><issn>1439-7641</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNqFkU1P3DAQhq2KqsDSK8fKEhcuux1_JHF6Q9kuIFGBaHu2jD2BICdO7YRq_z1ZdgGpl548h2ee8cxLyDGDBQPgX23_YBccOAcoVP6BHDApynmRS7a3qyUX2T45TOkRABQU7BPZF3mmMqHkAcEzeovGDs0T0h_Box29iXS57kzb2ER_DqNb01DT6sGH2HRmQEev473pGkur0PZh7Fxa0BsTB3r5ja5CtEhXDXpHl_iEPvQtdsMR-Vgbn_Dz7p2R36vvv6qL-dX1-WV1djW3kol8LpwsDIecZ6WoSynulJIut9wV3NRcWWOVlJlDEJihkdKUipmCFVDbabESxIycbr19DH9GTINum2TRe9NhGJPmRVaWOZecT-jJP-hjGGM3_U5zBWyaDC_UYkvZGFKKWOs-Nq2Ja81AbwLQmwD0WwBTw5eddrxr0b3hrxefgHIL_G08rv-j09XNRfUufwb-3pAe</recordid><startdate>20230417</startdate><enddate>20230417</enddate><creator>Komissarov, Leonid</creator><creator>Krep, Lukas</creator><creator>Schmalz, Felix</creator><creator>Kopp, Wassja A.</creator><creator>Leonhard, Kai</creator><creator>Verstraelen, Toon</creator><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9288-5608</orcidid><orcidid>https://orcid.org/0000-0001-6231-6957</orcidid><orcidid>https://orcid.org/0000-0001-8147-3464</orcidid><orcidid>https://orcid.org/0000-0001-9032-628X</orcidid><orcidid>https://orcid.org/0000-0002-2570-7454</orcidid><orcidid>https://orcid.org/0000-0001-6011-1632</orcidid></search><sort><creationdate>20230417</creationdate><title>A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development</title><author>Komissarov, Leonid ; Krep, Lukas ; Schmalz, Felix ; Kopp, Wassja A. ; Leonhard, Kai ; Verstraelen, Toon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4136-3d47a2062593f943b884d6c2d72af28cac8445de03e5ea44a981a7170fc807903</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Chemical elements</topic><topic>chemTraYzer</topic><topic>chlorinated organic compounds</topic><topic>Chlorination</topic><topic>Molecular dynamics</topic><topic>Optimization</topic><topic>Organic compounds</topic><topic>Parameterization</topic><topic>Parameters</topic><topic>parametrization</topic><topic>parAMS</topic><topic>Potential energy</topic><topic>reactive force fields</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Komissarov, Leonid</creatorcontrib><creatorcontrib>Krep, Lukas</creatorcontrib><creatorcontrib>Schmalz, Felix</creatorcontrib><creatorcontrib>Kopp, Wassja A.</creatorcontrib><creatorcontrib>Leonhard, Kai</creatorcontrib><creatorcontrib>Verstraelen, Toon</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>Chemphyschem</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Komissarov, Leonid</au><au>Krep, Lukas</au><au>Schmalz, Felix</au><au>Kopp, Wassja A.</au><au>Leonhard, Kai</au><au>Verstraelen, Toon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development</atitle><jtitle>Chemphyschem</jtitle><addtitle>Chemphyschem</addtitle><date>2023-04-17</date><risdate>2023</risdate><volume>24</volume><issue>8</issue><spage>e202200786</spage><epage>n/a</epage><pages>e202200786-n/a</pages><issn>1439-4235</issn><eissn>1439-7641</eissn><abstract>This work presents a novel parametrization for the ReaxFF formalism as a means to investigate reaction processes of chlorinated organic compounds. Force field parameters cover the chemical elements C, H, O, Cl and were obtained using a novel optimization approach involving relaxed potential energy surface scans as training targets. The resulting ReaxFF parametrization shows good transferability, as demonstrated on two independent ab initio validation sets. While this first part of our two‐paper series focuses on force field parametrization, we apply our parameters to the simulation of chlorinated dibenzofuran formation and decomposition processes in Part II.
The authors propose, apply and validate a novel approach to the fitting of force field parameters, resulting in a smoother representation of the potential energy surface when compared to more conventional parametrization methods.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>36585384</pmid><doi>10.1002/cphc.202200786</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-9288-5608</orcidid><orcidid>https://orcid.org/0000-0001-6231-6957</orcidid><orcidid>https://orcid.org/0000-0001-8147-3464</orcidid><orcidid>https://orcid.org/0000-0001-9032-628X</orcidid><orcidid>https://orcid.org/0000-0002-2570-7454</orcidid><orcidid>https://orcid.org/0000-0001-6011-1632</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1439-4235 |
ispartof | Chemphyschem, 2023-04, Vol.24 (8), p.e202200786-n/a |
issn | 1439-4235 1439-7641 |
language | eng |
recordid | cdi_proquest_miscellaneous_2759962422 |
source | Wiley Online Library Journals Frontfile Complete |
subjects | Chemical elements chemTraYzer chlorinated organic compounds Chlorination Molecular dynamics Optimization Organic compounds Parameterization Parameters parametrization parAMS Potential energy reactive force fields |
title | A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part I: Force Field Development |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-06T06%3A43%3A25IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Reactive%20Molecular%20Dynamics%20Study%20of%20Chlorinated%20Organic%20Compounds.%20Part%20I:%20Force%20Field%20Development&rft.jtitle=Chemphyschem&rft.au=Komissarov,%20Leonid&rft.date=2023-04-17&rft.volume=24&rft.issue=8&rft.spage=e202200786&rft.epage=n/a&rft.pages=e202200786-n/a&rft.issn=1439-4235&rft.eissn=1439-7641&rft_id=info:doi/10.1002/cphc.202200786&rft_dat=%3Cproquest_cross%3E2801884022%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2801884022&rft_id=info:pmid/36585384&rfr_iscdi=true |