Radiomics-based evaluation and possible characterization of dynamic contrast enhanced (DCE) perfusion derived different sub-regions of Glioblastoma
Glioblastoma (GB) is among the most devastative brain tumors, which usually comprises sub-regions like enhancing tumor (ET), non-enhancing tumor (NET), edema (ED), and necrosis (NEC) as described on MRI. Semi-automated algorithms to extract these tumor subpart volumes and boundaries have been demons...
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Veröffentlicht in: | European journal of radiology 2023-02, Vol.159, p.110655-110655, Article 110655 |
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container_title | European journal of radiology |
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creator | Suhail Parvaze Bhattacharjee, Rupsa Singh, Anup Ahlawat, Sunita Patir, Rana Vaishya, Sandeep Shah, Tejas J. Gupta, Rakesh K. |
description | Glioblastoma (GB) is among the most devastative brain tumors, which usually comprises sub-regions like enhancing tumor (ET), non-enhancing tumor (NET), edema (ED), and necrosis (NEC) as described on MRI. Semi-automated algorithms to extract these tumor subpart volumes and boundaries have been demonstrated using dynamic contrast-enhanced (DCE) perfusion imaging. We aim to characterize these sub-regions derived from DCE perfusion MRI using routine 3D post-contrast-T1 (T1GD) and FLAIR images with the aid of Radiomics analysis. We also explored the possibility of separating edema from tumor sub-regions by extracting the most influential radiomics features.
A total of 89 patients with histopathological confirmed IDH wild type GB were considered, who underwent the MR imaging with DCE perfusion-MRI. Perfusion and kinetic indices were computed and further used to segment tumor sub-regions. Radiomics features were extracted from FLAIR and T1GD images with PyRadiomics tool. Statistical analysis of the features was carried out using two approaches as well as machine learning (ML) models were constructed separately, i) within different tumor sub-regions and ii) ED as one category and the remaining sub-regions combined as another category. ML based predictive feature maps was also constructed.
Seven features found to be statistically significant to differentiate tumor sub-regions in FLAIR and T1GD images, with p-value |
doi_str_mv | 10.1016/j.ejrad.2022.110655 |
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A total of 89 patients with histopathological confirmed IDH wild type GB were considered, who underwent the MR imaging with DCE perfusion-MRI. Perfusion and kinetic indices were computed and further used to segment tumor sub-regions. Radiomics features were extracted from FLAIR and T1GD images with PyRadiomics tool. Statistical analysis of the features was carried out using two approaches as well as machine learning (ML) models were constructed separately, i) within different tumor sub-regions and ii) ED as one category and the remaining sub-regions combined as another category. ML based predictive feature maps was also constructed.
Seven features found to be statistically significant to differentiate tumor sub-regions in FLAIR and T1GD images, with p-value < 0.05 and AUC values in the range of 0.72 to 0.93. However, the edema features stood out in the analysis. In the second approach, the ML model was able to categorize the ED from the rest of the tumor sub-regions in FLAIR and T1GD images with AUC of 0.95 and 0.89 respectively.
Radiomics-based specific feature values and maps help to characterize different tumor sub-regions. However, the GLDM_DependenceNonUniformity feature appears to be most specific for separating edema from the remaining tumor sub-regions using conventional FLAIR images. This may be of value in the segmentation of edema from tumors using conventional MRI in the future.</description><identifier>ISSN: 0720-048X</identifier><identifier>EISSN: 1872-7727</identifier><identifier>DOI: 10.1016/j.ejrad.2022.110655</identifier><identifier>PMID: 36577183</identifier><language>eng</language><publisher>Ireland: Elsevier B.V</publisher><subject>Algorithms ; Brain Neoplasms - diagnostic imaging ; Brain Neoplasms - pathology ; Glioblastoma - diagnostic imaging ; Glioblastoma - pathology ; Humans ; Magnetic Resonance Imaging - methods ; Perfusion</subject><ispartof>European journal of radiology, 2023-02, Vol.159, p.110655-110655, Article 110655</ispartof><rights>2022 Elsevier B.V.</rights><rights>Copyright © 2022 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-37e82a291c6b97de7ff65659bc30523f69bc5ee7c259661b4fb056951e2d386c3</citedby><cites>FETCH-LOGICAL-c359t-37e82a291c6b97de7ff65659bc30523f69bc5ee7c259661b4fb056951e2d386c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0720048X22005058$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36577183$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Suhail Parvaze</creatorcontrib><creatorcontrib>Bhattacharjee, Rupsa</creatorcontrib><creatorcontrib>Singh, Anup</creatorcontrib><creatorcontrib>Ahlawat, Sunita</creatorcontrib><creatorcontrib>Patir, Rana</creatorcontrib><creatorcontrib>Vaishya, Sandeep</creatorcontrib><creatorcontrib>Shah, Tejas J.</creatorcontrib><creatorcontrib>Gupta, Rakesh K.</creatorcontrib><title>Radiomics-based evaluation and possible characterization of dynamic contrast enhanced (DCE) perfusion derived different sub-regions of Glioblastoma</title><title>European journal of radiology</title><addtitle>Eur J Radiol</addtitle><description>Glioblastoma (GB) is among the most devastative brain tumors, which usually comprises sub-regions like enhancing tumor (ET), non-enhancing tumor (NET), edema (ED), and necrosis (NEC) as described on MRI. Semi-automated algorithms to extract these tumor subpart volumes and boundaries have been demonstrated using dynamic contrast-enhanced (DCE) perfusion imaging. We aim to characterize these sub-regions derived from DCE perfusion MRI using routine 3D post-contrast-T1 (T1GD) and FLAIR images with the aid of Radiomics analysis. We also explored the possibility of separating edema from tumor sub-regions by extracting the most influential radiomics features.
A total of 89 patients with histopathological confirmed IDH wild type GB were considered, who underwent the MR imaging with DCE perfusion-MRI. Perfusion and kinetic indices were computed and further used to segment tumor sub-regions. Radiomics features were extracted from FLAIR and T1GD images with PyRadiomics tool. Statistical analysis of the features was carried out using two approaches as well as machine learning (ML) models were constructed separately, i) within different tumor sub-regions and ii) ED as one category and the remaining sub-regions combined as another category. ML based predictive feature maps was also constructed.
Seven features found to be statistically significant to differentiate tumor sub-regions in FLAIR and T1GD images, with p-value < 0.05 and AUC values in the range of 0.72 to 0.93. However, the edema features stood out in the analysis. In the second approach, the ML model was able to categorize the ED from the rest of the tumor sub-regions in FLAIR and T1GD images with AUC of 0.95 and 0.89 respectively.
Radiomics-based specific feature values and maps help to characterize different tumor sub-regions. However, the GLDM_DependenceNonUniformity feature appears to be most specific for separating edema from the remaining tumor sub-regions using conventional FLAIR images. This may be of value in the segmentation of edema from tumors using conventional MRI in the future.</description><subject>Algorithms</subject><subject>Brain Neoplasms - diagnostic imaging</subject><subject>Brain Neoplasms - pathology</subject><subject>Glioblastoma - diagnostic imaging</subject><subject>Glioblastoma - pathology</subject><subject>Humans</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Perfusion</subject><issn>0720-048X</issn><issn>1872-7727</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1u1DAUhS0EotPCEyAhL8sig3_GdrJggaalIFVCQiCxs_xzTT1K4sFORiqvwQvjNIUlK1u-3zlXPgehV5RsKaHy7WELh2z8lhHGtpQSKcQTtKGtYo1STD1FG6IYaciu_X6Gzks5EELErmPP0RmXQina8g36_cX4mIboSmNNAY_hZPrZTDGN2IweH1Mp0faA3Z3Jxk2Q4691mgL296OpUuzSOGVTJgzjnRlddbm82l-_wUfIYS4L7KvuVN99DAEyjBMus20y_KjDsljd9DHZvnqkwbxAz4LpC7x8PC_Qtw_XX_cfm9vPN5_2728bx0U3NVxBywzrqJO2Ux5UCFJI0VnHiWA8yHoTAMox0UlJ7S5YImQnKDDPW-n4BbpcfY85_ZyhTHqIxUHfmxHSXDRTomNSSkUqylfU5RpIhqCPOQ4m32tK9NKGPuiHNvTShl7bqKrXjwtmO4D_p_kbfwXerQDUb54iZF1chCXBmMFN2qf43wV_AGfEnu8</recordid><startdate>202302</startdate><enddate>202302</enddate><creator>Suhail Parvaze</creator><creator>Bhattacharjee, Rupsa</creator><creator>Singh, Anup</creator><creator>Ahlawat, Sunita</creator><creator>Patir, Rana</creator><creator>Vaishya, Sandeep</creator><creator>Shah, Tejas J.</creator><creator>Gupta, Rakesh K.</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202302</creationdate><title>Radiomics-based evaluation and possible characterization of dynamic contrast enhanced (DCE) perfusion derived different sub-regions of Glioblastoma</title><author>Suhail Parvaze ; Bhattacharjee, Rupsa ; Singh, Anup ; Ahlawat, Sunita ; Patir, Rana ; Vaishya, Sandeep ; Shah, Tejas J. ; Gupta, Rakesh K.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-37e82a291c6b97de7ff65659bc30523f69bc5ee7c259661b4fb056951e2d386c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Algorithms</topic><topic>Brain Neoplasms - diagnostic imaging</topic><topic>Brain Neoplasms - pathology</topic><topic>Glioblastoma - diagnostic imaging</topic><topic>Glioblastoma - pathology</topic><topic>Humans</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Perfusion</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Suhail Parvaze</creatorcontrib><creatorcontrib>Bhattacharjee, Rupsa</creatorcontrib><creatorcontrib>Singh, Anup</creatorcontrib><creatorcontrib>Ahlawat, Sunita</creatorcontrib><creatorcontrib>Patir, Rana</creatorcontrib><creatorcontrib>Vaishya, Sandeep</creatorcontrib><creatorcontrib>Shah, Tejas J.</creatorcontrib><creatorcontrib>Gupta, Rakesh K.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>European journal of radiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Suhail Parvaze</au><au>Bhattacharjee, Rupsa</au><au>Singh, Anup</au><au>Ahlawat, Sunita</au><au>Patir, Rana</au><au>Vaishya, Sandeep</au><au>Shah, Tejas J.</au><au>Gupta, Rakesh K.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Radiomics-based evaluation and possible characterization of dynamic contrast enhanced (DCE) perfusion derived different sub-regions of Glioblastoma</atitle><jtitle>European journal of radiology</jtitle><addtitle>Eur J Radiol</addtitle><date>2023-02</date><risdate>2023</risdate><volume>159</volume><spage>110655</spage><epage>110655</epage><pages>110655-110655</pages><artnum>110655</artnum><issn>0720-048X</issn><eissn>1872-7727</eissn><abstract>Glioblastoma (GB) is among the most devastative brain tumors, which usually comprises sub-regions like enhancing tumor (ET), non-enhancing tumor (NET), edema (ED), and necrosis (NEC) as described on MRI. Semi-automated algorithms to extract these tumor subpart volumes and boundaries have been demonstrated using dynamic contrast-enhanced (DCE) perfusion imaging. We aim to characterize these sub-regions derived from DCE perfusion MRI using routine 3D post-contrast-T1 (T1GD) and FLAIR images with the aid of Radiomics analysis. We also explored the possibility of separating edema from tumor sub-regions by extracting the most influential radiomics features.
A total of 89 patients with histopathological confirmed IDH wild type GB were considered, who underwent the MR imaging with DCE perfusion-MRI. Perfusion and kinetic indices were computed and further used to segment tumor sub-regions. Radiomics features were extracted from FLAIR and T1GD images with PyRadiomics tool. Statistical analysis of the features was carried out using two approaches as well as machine learning (ML) models were constructed separately, i) within different tumor sub-regions and ii) ED as one category and the remaining sub-regions combined as another category. ML based predictive feature maps was also constructed.
Seven features found to be statistically significant to differentiate tumor sub-regions in FLAIR and T1GD images, with p-value < 0.05 and AUC values in the range of 0.72 to 0.93. However, the edema features stood out in the analysis. In the second approach, the ML model was able to categorize the ED from the rest of the tumor sub-regions in FLAIR and T1GD images with AUC of 0.95 and 0.89 respectively.
Radiomics-based specific feature values and maps help to characterize different tumor sub-regions. However, the GLDM_DependenceNonUniformity feature appears to be most specific for separating edema from the remaining tumor sub-regions using conventional FLAIR images. This may be of value in the segmentation of edema from tumors using conventional MRI in the future.</abstract><cop>Ireland</cop><pub>Elsevier B.V</pub><pmid>36577183</pmid><doi>10.1016/j.ejrad.2022.110655</doi><tpages>1</tpages></addata></record> |
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subjects | Algorithms Brain Neoplasms - diagnostic imaging Brain Neoplasms - pathology Glioblastoma - diagnostic imaging Glioblastoma - pathology Humans Magnetic Resonance Imaging - methods Perfusion |
title | Radiomics-based evaluation and possible characterization of dynamic contrast enhanced (DCE) perfusion derived different sub-regions of Glioblastoma |
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