A novel PLS1 c.981+1G>A variant causes autosomal‐dominant hereditary hearing loss in a family
The fimbrin protein family contains a variety of proteins, among which Plastin1 (PLS1) is an important member. According to recent studies, variations in the coding region of the PLS1 gene are associated with the development of deafness. However, the molecular mechanism of deafness caused by PLS1 ge...
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Veröffentlicht in: | Clinical genetics 2023-04, Vol.103 (4), p.413-423 |
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creator | Xu, Liangpu Wang, Xinrui Li, Jia Chen, Lingji Wang, Haiwei Xu, Shiyi Zhang, Yanhong Li, Wei Yao, Pengcheng Tan, Meihua Zhou, Si Chen, Meihuan Pan, Yali Chen, Xuemei Chen, Xiaolan Liu, Yunliang Lin, Na Huang, Hailong Cao, Hua |
description | The fimbrin protein family contains a variety of proteins, among which Plastin1 (PLS1) is an important member. According to recent studies, variations in the coding region of the PLS1 gene are associated with the development of deafness. However, the molecular mechanism of deafness caused by PLS1 gene variants remains unknown. Whole‐exome sequencing was performed on hearing‐impaired family members and hearing family members to identify pathogenic variants, followed by Sanger sequencing. A minigene assay was conducted to investigate the effect of the variant on PLS1 mRNA splicing. The pathogenicity of the variant was further investigated in zebrafish. RNA‐sequencing (RNA‐seq) was performed to analyze the dysregulation of downstream signaling pathways caused by knockdown of PLS1 expression. We identified a novel variant, PLS1 c.981+1G>A, in a large Chinese family with hearing loss and showed that the variant is responsible for the occurrence of hearing loss by inducing exon 8 skipping. The variant caused abnormal inner ear phenotypes, characterized by decreases in the mean otolith distance, anterior otolith diameter, posterior otolith diameter, cochlear diameter, and swimming speed and distance in zebrafish. Furthermore, silencing PLS1 expression significantly upregulated the expression of genes in the PI3K‐Akt signaling pathway, including Col6a3, Spp1, Itgb3 and hepatocyte growth factor (Hgf). PLS1 c.981+1G>A is a novel pathogenic variant causing hearing loss by inducing exon 8 skipping. Upregulation of the expression of genes in the PI3K‐Akt signaling pathway plays an important role in the pathogenesis caused by variants in the PLS1 gene. |
doi_str_mv | 10.1111/cge.14283 |
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According to recent studies, variations in the coding region of the PLS1 gene are associated with the development of deafness. However, the molecular mechanism of deafness caused by PLS1 gene variants remains unknown. Whole‐exome sequencing was performed on hearing‐impaired family members and hearing family members to identify pathogenic variants, followed by Sanger sequencing. A minigene assay was conducted to investigate the effect of the variant on PLS1 mRNA splicing. The pathogenicity of the variant was further investigated in zebrafish. RNA‐sequencing (RNA‐seq) was performed to analyze the dysregulation of downstream signaling pathways caused by knockdown of PLS1 expression. We identified a novel variant, PLS1 c.981+1G>A, in a large Chinese family with hearing loss and showed that the variant is responsible for the occurrence of hearing loss by inducing exon 8 skipping. The variant caused abnormal inner ear phenotypes, characterized by decreases in the mean otolith distance, anterior otolith diameter, posterior otolith diameter, cochlear diameter, and swimming speed and distance in zebrafish. Furthermore, silencing PLS1 expression significantly upregulated the expression of genes in the PI3K‐Akt signaling pathway, including Col6a3, Spp1, Itgb3 and hepatocyte growth factor (Hgf). PLS1 c.981+1G>A is a novel pathogenic variant causing hearing loss by inducing exon 8 skipping. Upregulation of the expression of genes in the PI3K‐Akt signaling pathway plays an important role in the pathogenesis caused by variants in the PLS1 gene.</description><identifier>ISSN: 0009-9163</identifier><identifier>EISSN: 1399-0004</identifier><identifier>DOI: 10.1111/cge.14283</identifier><identifier>PMID: 36537221</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>1-Phosphatidylinositol 3-kinase ; AKT protein ; Animals ; Cochlea ; Danio rerio ; Deafness ; Deafness - genetics ; Fimbrin ; Genes ; Hearing loss ; Hearing Loss - genetics ; Hearing Loss, Sensorineural - genetics ; Hepatocyte growth factor ; Humans ; Inner ear ; mRNA ; Mutation ; Pathogenicity ; Pedigree ; Phenotypes ; Phosphatidylinositol 3-Kinases - genetics ; PI3K‐Akt signaling pathway ; PLS1 ; Proto-Oncogene Proteins c-akt - genetics ; RNA splicing ; Signal transduction ; Zebrafish - genetics</subject><ispartof>Clinical genetics, 2023-04, Vol.103 (4), p.413-423</ispartof><rights>2022 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.</rights><rights>2023 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2683-c4659672205417e7c2f2b9d5847361bde751725f044455adb42d8abff6e1aa353</citedby><cites>FETCH-LOGICAL-c2683-c4659672205417e7c2f2b9d5847361bde751725f044455adb42d8abff6e1aa353</cites><orcidid>0000-0003-4475-531X ; 0000-0001-7789-6907</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fcge.14283$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fcge.14283$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36537221$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xu, Liangpu</creatorcontrib><creatorcontrib>Wang, Xinrui</creatorcontrib><creatorcontrib>Li, Jia</creatorcontrib><creatorcontrib>Chen, Lingji</creatorcontrib><creatorcontrib>Wang, Haiwei</creatorcontrib><creatorcontrib>Xu, Shiyi</creatorcontrib><creatorcontrib>Zhang, Yanhong</creatorcontrib><creatorcontrib>Li, Wei</creatorcontrib><creatorcontrib>Yao, Pengcheng</creatorcontrib><creatorcontrib>Tan, Meihua</creatorcontrib><creatorcontrib>Zhou, Si</creatorcontrib><creatorcontrib>Chen, Meihuan</creatorcontrib><creatorcontrib>Pan, Yali</creatorcontrib><creatorcontrib>Chen, Xuemei</creatorcontrib><creatorcontrib>Chen, Xiaolan</creatorcontrib><creatorcontrib>Liu, Yunliang</creatorcontrib><creatorcontrib>Lin, Na</creatorcontrib><creatorcontrib>Huang, Hailong</creatorcontrib><creatorcontrib>Cao, Hua</creatorcontrib><title>A novel PLS1 c.981+1G>A variant causes autosomal‐dominant hereditary hearing loss in a family</title><title>Clinical genetics</title><addtitle>Clin Genet</addtitle><description>The fimbrin protein family contains a variety of proteins, among which Plastin1 (PLS1) is an important member. According to recent studies, variations in the coding region of the PLS1 gene are associated with the development of deafness. However, the molecular mechanism of deafness caused by PLS1 gene variants remains unknown. Whole‐exome sequencing was performed on hearing‐impaired family members and hearing family members to identify pathogenic variants, followed by Sanger sequencing. A minigene assay was conducted to investigate the effect of the variant on PLS1 mRNA splicing. The pathogenicity of the variant was further investigated in zebrafish. RNA‐sequencing (RNA‐seq) was performed to analyze the dysregulation of downstream signaling pathways caused by knockdown of PLS1 expression. We identified a novel variant, PLS1 c.981+1G>A, in a large Chinese family with hearing loss and showed that the variant is responsible for the occurrence of hearing loss by inducing exon 8 skipping. The variant caused abnormal inner ear phenotypes, characterized by decreases in the mean otolith distance, anterior otolith diameter, posterior otolith diameter, cochlear diameter, and swimming speed and distance in zebrafish. Furthermore, silencing PLS1 expression significantly upregulated the expression of genes in the PI3K‐Akt signaling pathway, including Col6a3, Spp1, Itgb3 and hepatocyte growth factor (Hgf). PLS1 c.981+1G>A is a novel pathogenic variant causing hearing loss by inducing exon 8 skipping. Upregulation of the expression of genes in the PI3K‐Akt signaling pathway plays an important role in the pathogenesis caused by variants in the PLS1 gene.</description><subject>1-Phosphatidylinositol 3-kinase</subject><subject>AKT protein</subject><subject>Animals</subject><subject>Cochlea</subject><subject>Danio rerio</subject><subject>Deafness</subject><subject>Deafness - genetics</subject><subject>Fimbrin</subject><subject>Genes</subject><subject>Hearing loss</subject><subject>Hearing Loss - genetics</subject><subject>Hearing Loss, Sensorineural - genetics</subject><subject>Hepatocyte growth factor</subject><subject>Humans</subject><subject>Inner ear</subject><subject>mRNA</subject><subject>Mutation</subject><subject>Pathogenicity</subject><subject>Pedigree</subject><subject>Phenotypes</subject><subject>Phosphatidylinositol 3-Kinases - genetics</subject><subject>PI3K‐Akt signaling pathway</subject><subject>PLS1</subject><subject>Proto-Oncogene Proteins c-akt - genetics</subject><subject>RNA splicing</subject><subject>Signal transduction</subject><subject>Zebrafish - genetics</subject><issn>0009-9163</issn><issn>1399-0004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kM9Kw0AQxhdRbK0efAFZ8KJI2v2bZC9CKbUKBQX1vGw2m5qSZGs2qfTmI_iMPolbUz0IzmVmmB8f33wAnGI0xL5GemGGmJGY7oE-pkIECCG2D_q-iUDgkPbAkXNLv9KIi0PQoyGnESG4D-QYVnZtCvgwf8RQD0WMr_DsegzXqs5V1UCtWmccVG1jnS1V8fn-kdoyr7a3F1ObNG9UvfGj56sFLKxzMK-ggpkq82JzDA4yVThzsusD8HwzfZrcBvP72d1kPA80CWMaaBZyEXpLiDMcmUiTjCQi5TGLaIiT1EQcR4RniDHGuUoTRtJYJVkWGqwU5XQALjrdVW1fW-MaWeZOm6JQlbGtkyTiISYs5tSj53_QpW3ryrvzVIxETBEWnrrsKF37l2qTyVWdl_5ViZHcpi596vI7dc-e7RTbpDTpL_kTswdGHfCWF2bzv5KczKad5Bdt6olL</recordid><startdate>202304</startdate><enddate>202304</enddate><creator>Xu, Liangpu</creator><creator>Wang, Xinrui</creator><creator>Li, Jia</creator><creator>Chen, Lingji</creator><creator>Wang, Haiwei</creator><creator>Xu, Shiyi</creator><creator>Zhang, Yanhong</creator><creator>Li, Wei</creator><creator>Yao, Pengcheng</creator><creator>Tan, Meihua</creator><creator>Zhou, Si</creator><creator>Chen, Meihuan</creator><creator>Pan, Yali</creator><creator>Chen, Xuemei</creator><creator>Chen, Xiaolan</creator><creator>Liu, Yunliang</creator><creator>Lin, Na</creator><creator>Huang, Hailong</creator><creator>Cao, Hua</creator><general>Blackwell Publishing Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4475-531X</orcidid><orcidid>https://orcid.org/0000-0001-7789-6907</orcidid></search><sort><creationdate>202304</creationdate><title>A novel PLS1 c.981+1G>A variant causes autosomal‐dominant hereditary hearing loss in a family</title><author>Xu, Liangpu ; Wang, Xinrui ; Li, Jia ; Chen, Lingji ; Wang, Haiwei ; Xu, Shiyi ; Zhang, Yanhong ; Li, Wei ; Yao, Pengcheng ; Tan, Meihua ; Zhou, Si ; Chen, Meihuan ; Pan, Yali ; Chen, Xuemei ; Chen, Xiaolan ; Liu, Yunliang ; Lin, Na ; Huang, Hailong ; Cao, Hua</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2683-c4659672205417e7c2f2b9d5847361bde751725f044455adb42d8abff6e1aa353</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>1-Phosphatidylinositol 3-kinase</topic><topic>AKT protein</topic><topic>Animals</topic><topic>Cochlea</topic><topic>Danio rerio</topic><topic>Deafness</topic><topic>Deafness - genetics</topic><topic>Fimbrin</topic><topic>Genes</topic><topic>Hearing loss</topic><topic>Hearing Loss - genetics</topic><topic>Hearing Loss, Sensorineural - genetics</topic><topic>Hepatocyte growth factor</topic><topic>Humans</topic><topic>Inner ear</topic><topic>mRNA</topic><topic>Mutation</topic><topic>Pathogenicity</topic><topic>Pedigree</topic><topic>Phenotypes</topic><topic>Phosphatidylinositol 3-Kinases - genetics</topic><topic>PI3K‐Akt signaling pathway</topic><topic>PLS1</topic><topic>Proto-Oncogene Proteins c-akt - genetics</topic><topic>RNA splicing</topic><topic>Signal transduction</topic><topic>Zebrafish - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Liangpu</creatorcontrib><creatorcontrib>Wang, Xinrui</creatorcontrib><creatorcontrib>Li, Jia</creatorcontrib><creatorcontrib>Chen, Lingji</creatorcontrib><creatorcontrib>Wang, Haiwei</creatorcontrib><creatorcontrib>Xu, Shiyi</creatorcontrib><creatorcontrib>Zhang, Yanhong</creatorcontrib><creatorcontrib>Li, Wei</creatorcontrib><creatorcontrib>Yao, Pengcheng</creatorcontrib><creatorcontrib>Tan, Meihua</creatorcontrib><creatorcontrib>Zhou, Si</creatorcontrib><creatorcontrib>Chen, Meihuan</creatorcontrib><creatorcontrib>Pan, Yali</creatorcontrib><creatorcontrib>Chen, Xuemei</creatorcontrib><creatorcontrib>Chen, Xiaolan</creatorcontrib><creatorcontrib>Liu, Yunliang</creatorcontrib><creatorcontrib>Lin, Na</creatorcontrib><creatorcontrib>Huang, Hailong</creatorcontrib><creatorcontrib>Cao, Hua</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Clinical genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Liangpu</au><au>Wang, Xinrui</au><au>Li, Jia</au><au>Chen, Lingji</au><au>Wang, Haiwei</au><au>Xu, Shiyi</au><au>Zhang, Yanhong</au><au>Li, Wei</au><au>Yao, Pengcheng</au><au>Tan, Meihua</au><au>Zhou, Si</au><au>Chen, Meihuan</au><au>Pan, Yali</au><au>Chen, Xuemei</au><au>Chen, Xiaolan</au><au>Liu, Yunliang</au><au>Lin, Na</au><au>Huang, Hailong</au><au>Cao, Hua</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A novel PLS1 c.981+1G>A variant causes autosomal‐dominant hereditary hearing loss in a family</atitle><jtitle>Clinical genetics</jtitle><addtitle>Clin Genet</addtitle><date>2023-04</date><risdate>2023</risdate><volume>103</volume><issue>4</issue><spage>413</spage><epage>423</epage><pages>413-423</pages><issn>0009-9163</issn><eissn>1399-0004</eissn><abstract>The fimbrin protein family contains a variety of proteins, among which Plastin1 (PLS1) is an important member. According to recent studies, variations in the coding region of the PLS1 gene are associated with the development of deafness. However, the molecular mechanism of deafness caused by PLS1 gene variants remains unknown. Whole‐exome sequencing was performed on hearing‐impaired family members and hearing family members to identify pathogenic variants, followed by Sanger sequencing. A minigene assay was conducted to investigate the effect of the variant on PLS1 mRNA splicing. The pathogenicity of the variant was further investigated in zebrafish. RNA‐sequencing (RNA‐seq) was performed to analyze the dysregulation of downstream signaling pathways caused by knockdown of PLS1 expression. We identified a novel variant, PLS1 c.981+1G>A, in a large Chinese family with hearing loss and showed that the variant is responsible for the occurrence of hearing loss by inducing exon 8 skipping. The variant caused abnormal inner ear phenotypes, characterized by decreases in the mean otolith distance, anterior otolith diameter, posterior otolith diameter, cochlear diameter, and swimming speed and distance in zebrafish. Furthermore, silencing PLS1 expression significantly upregulated the expression of genes in the PI3K‐Akt signaling pathway, including Col6a3, Spp1, Itgb3 and hepatocyte growth factor (Hgf). PLS1 c.981+1G>A is a novel pathogenic variant causing hearing loss by inducing exon 8 skipping. Upregulation of the expression of genes in the PI3K‐Akt signaling pathway plays an important role in the pathogenesis caused by variants in the PLS1 gene.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>36537221</pmid><doi>10.1111/cge.14283</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0003-4475-531X</orcidid><orcidid>https://orcid.org/0000-0001-7789-6907</orcidid></addata></record> |
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subjects | 1-Phosphatidylinositol 3-kinase AKT protein Animals Cochlea Danio rerio Deafness Deafness - genetics Fimbrin Genes Hearing loss Hearing Loss - genetics Hearing Loss, Sensorineural - genetics Hepatocyte growth factor Humans Inner ear mRNA Mutation Pathogenicity Pedigree Phenotypes Phosphatidylinositol 3-Kinases - genetics PI3K‐Akt signaling pathway PLS1 Proto-Oncogene Proteins c-akt - genetics RNA splicing Signal transduction Zebrafish - genetics |
title | A novel PLS1 c.981+1G>A variant causes autosomal‐dominant hereditary hearing loss in a family |
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