Single‐cell RNA sequencing for traumatic spinal cord injury
Traumatic spinal cord injury (tSCI) is a severe injury of the central nervous system (CNS) with complicated pathological microenvironment that results in hemorrhage, inflammation, and scar formation. The microenvironment of the injured spinal cord comprises heterogeneous neurons, glial cells, inflam...
Gespeichert in:
Veröffentlicht in: | The FASEB journal 2022-12, Vol.36 (12), p.e22656-n/a |
---|---|
Hauptverfasser: | , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | n/a |
---|---|
container_issue | 12 |
container_start_page | e22656 |
container_title | The FASEB journal |
container_volume | 36 |
creator | Cao, Yuqi Zhu, Shunxing Yu, Bin Yao, Chun |
description | Traumatic spinal cord injury (tSCI) is a severe injury of the central nervous system (CNS) with complicated pathological microenvironment that results in hemorrhage, inflammation, and scar formation. The microenvironment of the injured spinal cord comprises heterogeneous neurons, glial cells, inflammatory cells, and stroma‐related cells. Increasing evidence has indicated that the altered cellular and molecular microenvironment following tSCI is a key factor impeding functional recovery. Single‐cell RNA sequencing (scRNA‐seq) has provided deep insights into the dynamic cellular and molecular changes in the microenvironment by comprehensively characterizing the diversity of spinal cord cell types. Specifically, scRNA‐seq enables the exploration of the molecular mechanisms underlying tSCI by elucidating intercellular communication in spinal cord samples between normal and injury conditions at a single‐cell resolution. Here, we first described the pathological and physiological processes after tSCI and gave a brief introduction of the scRNA‐seq technology. We then focused on the recent scRNA‐seq researches in tSCI, which characterized diverse cell‐type populations and specific cell–cell interactions in tSCI. In addition, we also highlighted some potential directions for the research of scRNA‐seq in tSCI in the future. |
doi_str_mv | 10.1096/fj.202200943R |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2736303491</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2736303491</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3386-f859f5b501e23600565fee2b19666414a2f307a25fd6319c1fcb100280b631a73</originalsourceid><addsrcrecordid>eNp9kLFOwzAQhi0EoqUwsqKMLClnO77EA0OpKCBVILUwW45ro0RpUuxGqBuPwDPyJKRqgY3pdKdPv_77CDmnMKQg8cqVQwaMAciEzw5InwoOMWYIh6QPmWQxIs965CSEEgAoUDwmPY48TZiQfXI9L-rXyn59fBpbVdHscRQF-9ba2nT3yDU-WnvdLvW6MFFYFbWuItP4RVTUZes3p-TI6SrYs_0ckJfJ7fP4Pp4-3T2MR9PYcJ5h7DIhncgFUMs4AggUzlqWU4mICU00cxxSzYRbIKfSUGdyCsAyyLtdp3xALne5K9905cJaLYuwLaxr27RBsbT7CHgiaYfGO9T4JgRvnVr5Yqn9RlFQW2PKlerPWMdf7KPbfGkXv_SPog5IdsB7UdnN_2lqMr9hjKFA_g0laHTs</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2736303491</pqid></control><display><type>article</type><title>Single‐cell RNA sequencing for traumatic spinal cord injury</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Alma/SFX Local Collection</source><creator>Cao, Yuqi ; Zhu, Shunxing ; Yu, Bin ; Yao, Chun</creator><creatorcontrib>Cao, Yuqi ; Zhu, Shunxing ; Yu, Bin ; Yao, Chun</creatorcontrib><description>Traumatic spinal cord injury (tSCI) is a severe injury of the central nervous system (CNS) with complicated pathological microenvironment that results in hemorrhage, inflammation, and scar formation. The microenvironment of the injured spinal cord comprises heterogeneous neurons, glial cells, inflammatory cells, and stroma‐related cells. Increasing evidence has indicated that the altered cellular and molecular microenvironment following tSCI is a key factor impeding functional recovery. Single‐cell RNA sequencing (scRNA‐seq) has provided deep insights into the dynamic cellular and molecular changes in the microenvironment by comprehensively characterizing the diversity of spinal cord cell types. Specifically, scRNA‐seq enables the exploration of the molecular mechanisms underlying tSCI by elucidating intercellular communication in spinal cord samples between normal and injury conditions at a single‐cell resolution. Here, we first described the pathological and physiological processes after tSCI and gave a brief introduction of the scRNA‐seq technology. We then focused on the recent scRNA‐seq researches in tSCI, which characterized diverse cell‐type populations and specific cell–cell interactions in tSCI. In addition, we also highlighted some potential directions for the research of scRNA‐seq in tSCI in the future.</description><identifier>ISSN: 0892-6638</identifier><identifier>EISSN: 1530-6860</identifier><identifier>DOI: 10.1096/fj.202200943R</identifier><identifier>PMID: 36374259</identifier><language>eng</language><publisher>United States</publisher><subject>Humans ; Inflammation - complications ; intercellular communication ; microenvironment ; Sequence Analysis, RNA ; single‐cell RNA sequencing ; spatial transcriptomics ; Spinal Cord - pathology ; Spinal Cord Injuries - genetics ; Spinal Cord Injuries - pathology ; traumatic spinal cord injury</subject><ispartof>The FASEB journal, 2022-12, Vol.36 (12), p.e22656-n/a</ispartof><rights>2022 Federation of American Societies for Experimental Biology.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3386-f859f5b501e23600565fee2b19666414a2f307a25fd6319c1fcb100280b631a73</citedby><cites>FETCH-LOGICAL-c3386-f859f5b501e23600565fee2b19666414a2f307a25fd6319c1fcb100280b631a73</cites><orcidid>0000-0002-3706-955X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1096%2Ffj.202200943R$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1096%2Ffj.202200943R$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36374259$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cao, Yuqi</creatorcontrib><creatorcontrib>Zhu, Shunxing</creatorcontrib><creatorcontrib>Yu, Bin</creatorcontrib><creatorcontrib>Yao, Chun</creatorcontrib><title>Single‐cell RNA sequencing for traumatic spinal cord injury</title><title>The FASEB journal</title><addtitle>FASEB J</addtitle><description>Traumatic spinal cord injury (tSCI) is a severe injury of the central nervous system (CNS) with complicated pathological microenvironment that results in hemorrhage, inflammation, and scar formation. The microenvironment of the injured spinal cord comprises heterogeneous neurons, glial cells, inflammatory cells, and stroma‐related cells. Increasing evidence has indicated that the altered cellular and molecular microenvironment following tSCI is a key factor impeding functional recovery. Single‐cell RNA sequencing (scRNA‐seq) has provided deep insights into the dynamic cellular and molecular changes in the microenvironment by comprehensively characterizing the diversity of spinal cord cell types. Specifically, scRNA‐seq enables the exploration of the molecular mechanisms underlying tSCI by elucidating intercellular communication in spinal cord samples between normal and injury conditions at a single‐cell resolution. Here, we first described the pathological and physiological processes after tSCI and gave a brief introduction of the scRNA‐seq technology. We then focused on the recent scRNA‐seq researches in tSCI, which characterized diverse cell‐type populations and specific cell–cell interactions in tSCI. In addition, we also highlighted some potential directions for the research of scRNA‐seq in tSCI in the future.</description><subject>Humans</subject><subject>Inflammation - complications</subject><subject>intercellular communication</subject><subject>microenvironment</subject><subject>Sequence Analysis, RNA</subject><subject>single‐cell RNA sequencing</subject><subject>spatial transcriptomics</subject><subject>Spinal Cord - pathology</subject><subject>Spinal Cord Injuries - genetics</subject><subject>Spinal Cord Injuries - pathology</subject><subject>traumatic spinal cord injury</subject><issn>0892-6638</issn><issn>1530-6860</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kLFOwzAQhi0EoqUwsqKMLClnO77EA0OpKCBVILUwW45ro0RpUuxGqBuPwDPyJKRqgY3pdKdPv_77CDmnMKQg8cqVQwaMAciEzw5InwoOMWYIh6QPmWQxIs965CSEEgAoUDwmPY48TZiQfXI9L-rXyn59fBpbVdHscRQF-9ba2nT3yDU-WnvdLvW6MFFYFbWuItP4RVTUZes3p-TI6SrYs_0ckJfJ7fP4Pp4-3T2MR9PYcJ5h7DIhncgFUMs4AggUzlqWU4mICU00cxxSzYRbIKfSUGdyCsAyyLtdp3xALne5K9905cJaLYuwLaxr27RBsbT7CHgiaYfGO9T4JgRvnVr5Yqn9RlFQW2PKlerPWMdf7KPbfGkXv_SPog5IdsB7UdnN_2lqMr9hjKFA_g0laHTs</recordid><startdate>202212</startdate><enddate>202212</enddate><creator>Cao, Yuqi</creator><creator>Zhu, Shunxing</creator><creator>Yu, Bin</creator><creator>Yao, Chun</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-3706-955X</orcidid></search><sort><creationdate>202212</creationdate><title>Single‐cell RNA sequencing for traumatic spinal cord injury</title><author>Cao, Yuqi ; Zhu, Shunxing ; Yu, Bin ; Yao, Chun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3386-f859f5b501e23600565fee2b19666414a2f307a25fd6319c1fcb100280b631a73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Humans</topic><topic>Inflammation - complications</topic><topic>intercellular communication</topic><topic>microenvironment</topic><topic>Sequence Analysis, RNA</topic><topic>single‐cell RNA sequencing</topic><topic>spatial transcriptomics</topic><topic>Spinal Cord - pathology</topic><topic>Spinal Cord Injuries - genetics</topic><topic>Spinal Cord Injuries - pathology</topic><topic>traumatic spinal cord injury</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cao, Yuqi</creatorcontrib><creatorcontrib>Zhu, Shunxing</creatorcontrib><creatorcontrib>Yu, Bin</creatorcontrib><creatorcontrib>Yao, Chun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The FASEB journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cao, Yuqi</au><au>Zhu, Shunxing</au><au>Yu, Bin</au><au>Yao, Chun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Single‐cell RNA sequencing for traumatic spinal cord injury</atitle><jtitle>The FASEB journal</jtitle><addtitle>FASEB J</addtitle><date>2022-12</date><risdate>2022</risdate><volume>36</volume><issue>12</issue><spage>e22656</spage><epage>n/a</epage><pages>e22656-n/a</pages><issn>0892-6638</issn><eissn>1530-6860</eissn><abstract>Traumatic spinal cord injury (tSCI) is a severe injury of the central nervous system (CNS) with complicated pathological microenvironment that results in hemorrhage, inflammation, and scar formation. The microenvironment of the injured spinal cord comprises heterogeneous neurons, glial cells, inflammatory cells, and stroma‐related cells. Increasing evidence has indicated that the altered cellular and molecular microenvironment following tSCI is a key factor impeding functional recovery. Single‐cell RNA sequencing (scRNA‐seq) has provided deep insights into the dynamic cellular and molecular changes in the microenvironment by comprehensively characterizing the diversity of spinal cord cell types. Specifically, scRNA‐seq enables the exploration of the molecular mechanisms underlying tSCI by elucidating intercellular communication in spinal cord samples between normal and injury conditions at a single‐cell resolution. Here, we first described the pathological and physiological processes after tSCI and gave a brief introduction of the scRNA‐seq technology. We then focused on the recent scRNA‐seq researches in tSCI, which characterized diverse cell‐type populations and specific cell–cell interactions in tSCI. In addition, we also highlighted some potential directions for the research of scRNA‐seq in tSCI in the future.</abstract><cop>United States</cop><pmid>36374259</pmid><doi>10.1096/fj.202200943R</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-3706-955X</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0892-6638 |
ispartof | The FASEB journal, 2022-12, Vol.36 (12), p.e22656-n/a |
issn | 0892-6638 1530-6860 |
language | eng |
recordid | cdi_proquest_miscellaneous_2736303491 |
source | MEDLINE; Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection |
subjects | Humans Inflammation - complications intercellular communication microenvironment Sequence Analysis, RNA single‐cell RNA sequencing spatial transcriptomics Spinal Cord - pathology Spinal Cord Injuries - genetics Spinal Cord Injuries - pathology traumatic spinal cord injury |
title | Single‐cell RNA sequencing for traumatic spinal cord injury |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-31T23%3A55%3A41IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Single%E2%80%90cell%20RNA%20sequencing%20for%20traumatic%20spinal%20cord%20injury&rft.jtitle=The%20FASEB%20journal&rft.au=Cao,%20Yuqi&rft.date=2022-12&rft.volume=36&rft.issue=12&rft.spage=e22656&rft.epage=n/a&rft.pages=e22656-n/a&rft.issn=0892-6638&rft.eissn=1530-6860&rft_id=info:doi/10.1096/fj.202200943R&rft_dat=%3Cproquest_cross%3E2736303491%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2736303491&rft_id=info:pmid/36374259&rfr_iscdi=true |