Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency

The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers ( Capsicum spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved...

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Veröffentlicht in:Molecular genetics and genomics : MGG 2023, Vol.298 (1), p.201-212
Hauptverfasser: Kondo, Fumiya, Umeda, Koyuki, Sudasinghe, Sathya Prabandaka, Yamaguchi, Moe, Aratani, Shintaro, Kumanomido, Yui, Nemoto, Kazuhiro, Nagano, Atsushi J., Matsushima, Kenichi
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container_title Molecular genetics and genomics : MGG
container_volume 298
creator Kondo, Fumiya
Umeda, Koyuki
Sudasinghe, Sathya Prabandaka
Yamaguchi, Moe
Aratani, Shintaro
Kumanomido, Yui
Nemoto, Kazuhiro
Nagano, Atsushi J.
Matsushima, Kenichi
description The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers ( Capsicum spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved in the deficiency of pungency (quite low pungency) that is uniquely observed in the Japanese chili pepper ‘Shishito’ ( Capsicum annuum ). First, the F 2 population (‘Shishito’ × pungent variety ‘Takanotsume’) was used for segregation analysis, and pungency level was investigated using capsaicinoid quantification with high-performance liquid chromatography. Also, restriction site associated DNA sequencing of the F 2 population was performed, and genetic map construction and quantitative trait locus (QTL) mapping were implemented. The results indicated that the F 2 population showed varying capsaicinoid content and two major QTLs were detected, Shql3 and Shql7 , which explained 39.8 and 19.7% of the genetic variance, respectively. According to these results, the quite low pungency of ‘Shishito’ was a quantitative trait that involved at least the two loci. Further, this trait was completely separate from general non-pungent traits controlled by individual recessive genes, as described in previous studies. The present study is the first report to investigate the genetic mechanism of pungency deficiency in Japanese chili peppers, and our results provide new insights into the genetic regulation of pungency in chili pepper.
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subjects Animal Genetics and Genomics
Biochemistry
Biomedical and Life Sciences
Biosynthesis
Capsaicin
Capsaicin - analysis
Capsaicin - chemistry
Capsicum - genetics
Capsicum annuum
Chromatography
Chromosomes
DNA sequencing
East Asian People
Fatty acids
Fruit - genetics
Gene loci
Gene mapping
Genes, Plant
Genetic analysis
Genetic diversity
Genetic factors
Genetics
Genomics
Heredity
High-performance liquid chromatography
Human Genetics
Humans
Life Sciences
Microbial Genetics and Genomics
Mutation
Original Article
Plant Genetics and Genomics
Population genetics
Pungent principles
Quantitative trait loci
Quantitative Trait Loci - genetics
Sensation
title Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency
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