Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency
The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers ( Capsicum spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved...
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| Veröffentlicht in: | Molecular genetics and genomics : MGG 2023, Vol.298 (1), p.201-212 |
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| creator | Kondo, Fumiya Umeda, Koyuki Sudasinghe, Sathya Prabandaka Yamaguchi, Moe Aratani, Shintaro Kumanomido, Yui Nemoto, Kazuhiro Nagano, Atsushi J. Matsushima, Kenichi |
| description | The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers (
Capsicum
spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved in the deficiency of pungency (quite low pungency) that is uniquely observed in the Japanese chili pepper ‘Shishito’ (
Capsicum annuum
). First, the F
2
population (‘Shishito’ × pungent variety ‘Takanotsume’) was used for segregation analysis, and pungency level was investigated using capsaicinoid quantification with high-performance liquid chromatography. Also, restriction site associated DNA sequencing of the F
2
population was performed, and genetic map construction and quantitative trait locus (QTL) mapping were implemented. The results indicated that the F
2
population showed varying capsaicinoid content and two major QTLs were detected,
Shql3
and
Shql7
, which explained 39.8 and 19.7% of the genetic variance, respectively. According to these results, the quite low pungency of ‘Shishito’ was a quantitative trait that involved at least the two loci. Further, this trait was completely separate from general non-pungent traits controlled by individual recessive genes, as described in previous studies. The present study is the first report to investigate the genetic mechanism of pungency deficiency in Japanese chili peppers, and our results provide new insights into the genetic regulation of pungency in chili pepper. |
| doi_str_mv | 10.1007/s00438-022-01975-2 |
| format | Article |
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Capsicum
spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved in the deficiency of pungency (quite low pungency) that is uniquely observed in the Japanese chili pepper ‘Shishito’ (
Capsicum annuum
). First, the F
2
population (‘Shishito’ × pungent variety ‘Takanotsume’) was used for segregation analysis, and pungency level was investigated using capsaicinoid quantification with high-performance liquid chromatography. Also, restriction site associated DNA sequencing of the F
2
population was performed, and genetic map construction and quantitative trait locus (QTL) mapping were implemented. The results indicated that the F
2
population showed varying capsaicinoid content and two major QTLs were detected,
Shql3
and
Shql7
, which explained 39.8 and 19.7% of the genetic variance, respectively. According to these results, the quite low pungency of ‘Shishito’ was a quantitative trait that involved at least the two loci. Further, this trait was completely separate from general non-pungent traits controlled by individual recessive genes, as described in previous studies. The present study is the first report to investigate the genetic mechanism of pungency deficiency in Japanese chili peppers, and our results provide new insights into the genetic regulation of pungency in chili pepper.</description><identifier>ISSN: 1617-4615</identifier><identifier>EISSN: 1617-4623</identifier><identifier>DOI: 10.1007/s00438-022-01975-2</identifier><identifier>PMID: 36374297</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animal Genetics and Genomics ; Biochemistry ; Biomedical and Life Sciences ; Biosynthesis ; Capsaicin ; Capsaicin - analysis ; Capsaicin - chemistry ; Capsicum - genetics ; Capsicum annuum ; Chromatography ; Chromosomes ; DNA sequencing ; East Asian People ; Fatty acids ; Fruit - genetics ; Gene loci ; Gene mapping ; Genes, Plant ; Genetic analysis ; Genetic diversity ; Genetic factors ; Genetics ; Genomics ; Heredity ; High-performance liquid chromatography ; Human Genetics ; Humans ; Life Sciences ; Microbial Genetics and Genomics ; Mutation ; Original Article ; Plant Genetics and Genomics ; Population genetics ; Pungent principles ; Quantitative trait loci ; Quantitative Trait Loci - genetics ; Sensation</subject><ispartof>Molecular genetics and genomics : MGG, 2023, Vol.298 (1), p.201-212</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-3a76975295f94bf91428a34d0496b3e9a4082fa8620f05a4640df965001a49893</citedby><cites>FETCH-LOGICAL-c375t-3a76975295f94bf91428a34d0496b3e9a4082fa8620f05a4640df965001a49893</cites><orcidid>0000-0003-3826-7475</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00438-022-01975-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00438-022-01975-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36374297$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kondo, Fumiya</creatorcontrib><creatorcontrib>Umeda, Koyuki</creatorcontrib><creatorcontrib>Sudasinghe, Sathya Prabandaka</creatorcontrib><creatorcontrib>Yamaguchi, Moe</creatorcontrib><creatorcontrib>Aratani, Shintaro</creatorcontrib><creatorcontrib>Kumanomido, Yui</creatorcontrib><creatorcontrib>Nemoto, Kazuhiro</creatorcontrib><creatorcontrib>Nagano, Atsushi J.</creatorcontrib><creatorcontrib>Matsushima, Kenichi</creatorcontrib><title>Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency</title><title>Molecular genetics and genomics : MGG</title><addtitle>Mol Genet Genomics</addtitle><addtitle>Mol Genet Genomics</addtitle><description>The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers (
Capsicum
spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved in the deficiency of pungency (quite low pungency) that is uniquely observed in the Japanese chili pepper ‘Shishito’ (
Capsicum annuum
). First, the F
2
population (‘Shishito’ × pungent variety ‘Takanotsume’) was used for segregation analysis, and pungency level was investigated using capsaicinoid quantification with high-performance liquid chromatography. Also, restriction site associated DNA sequencing of the F
2
population was performed, and genetic map construction and quantitative trait locus (QTL) mapping were implemented. The results indicated that the F
2
population showed varying capsaicinoid content and two major QTLs were detected,
Shql3
and
Shql7
, which explained 39.8 and 19.7% of the genetic variance, respectively. According to these results, the quite low pungency of ‘Shishito’ was a quantitative trait that involved at least the two loci. Further, this trait was completely separate from general non-pungent traits controlled by individual recessive genes, as described in previous studies. The present study is the first report to investigate the genetic mechanism of pungency deficiency in Japanese chili peppers, and our results provide new insights into the genetic regulation of pungency in chili pepper.</description><subject>Animal Genetics and Genomics</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Capsaicin</subject><subject>Capsaicin - analysis</subject><subject>Capsaicin - chemistry</subject><subject>Capsicum - genetics</subject><subject>Capsicum annuum</subject><subject>Chromatography</subject><subject>Chromosomes</subject><subject>DNA sequencing</subject><subject>East Asian People</subject><subject>Fatty acids</subject><subject>Fruit - genetics</subject><subject>Gene loci</subject><subject>Gene mapping</subject><subject>Genes, Plant</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic factors</subject><subject>Genetics</subject><subject>Genomics</subject><subject>Heredity</subject><subject>High-performance liquid chromatography</subject><subject>Human Genetics</subject><subject>Humans</subject><subject>Life Sciences</subject><subject>Microbial Genetics and Genomics</subject><subject>Mutation</subject><subject>Original Article</subject><subject>Plant Genetics and Genomics</subject><subject>Population genetics</subject><subject>Pungent principles</subject><subject>Quantitative trait loci</subject><subject>Quantitative Trait Loci - 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analysis</topic><topic>Capsaicin - chemistry</topic><topic>Capsicum - genetics</topic><topic>Capsicum annuum</topic><topic>Chromatography</topic><topic>Chromosomes</topic><topic>DNA sequencing</topic><topic>East Asian People</topic><topic>Fatty acids</topic><topic>Fruit - genetics</topic><topic>Gene loci</topic><topic>Gene mapping</topic><topic>Genes, Plant</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetic factors</topic><topic>Genetics</topic><topic>Genomics</topic><topic>Heredity</topic><topic>High-performance liquid chromatography</topic><topic>Human Genetics</topic><topic>Humans</topic><topic>Life Sciences</topic><topic>Microbial Genetics and Genomics</topic><topic>Mutation</topic><topic>Original Article</topic><topic>Plant Genetics and Genomics</topic><topic>Population genetics</topic><topic>Pungent principles</topic><topic>Quantitative trait loci</topic><topic>Quantitative Trait Loci - genetics</topic><topic>Sensation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kondo, Fumiya</creatorcontrib><creatorcontrib>Umeda, Koyuki</creatorcontrib><creatorcontrib>Sudasinghe, Sathya Prabandaka</creatorcontrib><creatorcontrib>Yamaguchi, Moe</creatorcontrib><creatorcontrib>Aratani, Shintaro</creatorcontrib><creatorcontrib>Kumanomido, Yui</creatorcontrib><creatorcontrib>Nemoto, Kazuhiro</creatorcontrib><creatorcontrib>Nagano, Atsushi J.</creatorcontrib><creatorcontrib>Matsushima, Kenichi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular genetics and genomics : MGG</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kondo, Fumiya</au><au>Umeda, Koyuki</au><au>Sudasinghe, Sathya Prabandaka</au><au>Yamaguchi, Moe</au><au>Aratani, Shintaro</au><au>Kumanomido, Yui</au><au>Nemoto, Kazuhiro</au><au>Nagano, Atsushi J.</au><au>Matsushima, Kenichi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency</atitle><jtitle>Molecular genetics and genomics : MGG</jtitle><stitle>Mol Genet Genomics</stitle><addtitle>Mol Genet Genomics</addtitle><date>2023</date><risdate>2023</risdate><volume>298</volume><issue>1</issue><spage>201</spage><epage>212</epage><pages>201-212</pages><issn>1617-4615</issn><eissn>1617-4623</eissn><abstract>The sensation of pungency generated by capsaicinoids is a characteristic trait of chili peppers (
Capsicum
spp.), and the presence or absence of pungency is central in determining its usage as a spice or a vegetable. In the present study, we aimed to clarify the heredity and genetic factors involved in the deficiency of pungency (quite low pungency) that is uniquely observed in the Japanese chili pepper ‘Shishito’ (
Capsicum annuum
). First, the F
2
population (‘Shishito’ × pungent variety ‘Takanotsume’) was used for segregation analysis, and pungency level was investigated using capsaicinoid quantification with high-performance liquid chromatography. Also, restriction site associated DNA sequencing of the F
2
population was performed, and genetic map construction and quantitative trait locus (QTL) mapping were implemented. The results indicated that the F
2
population showed varying capsaicinoid content and two major QTLs were detected,
Shql3
and
Shql7
, which explained 39.8 and 19.7% of the genetic variance, respectively. According to these results, the quite low pungency of ‘Shishito’ was a quantitative trait that involved at least the two loci. Further, this trait was completely separate from general non-pungent traits controlled by individual recessive genes, as described in previous studies. The present study is the first report to investigate the genetic mechanism of pungency deficiency in Japanese chili peppers, and our results provide new insights into the genetic regulation of pungency in chili pepper.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>36374297</pmid><doi>10.1007/s00438-022-01975-2</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-3826-7475</orcidid></addata></record> |
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| ispartof | Molecular genetics and genomics : MGG, 2023, Vol.298 (1), p.201-212 |
| issn | 1617-4615 1617-4623 |
| language | eng |
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| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Animal Genetics and Genomics Biochemistry Biomedical and Life Sciences Biosynthesis Capsaicin Capsaicin - analysis Capsaicin - chemistry Capsicum - genetics Capsicum annuum Chromatography Chromosomes DNA sequencing East Asian People Fatty acids Fruit - genetics Gene loci Gene mapping Genes, Plant Genetic analysis Genetic diversity Genetic factors Genetics Genomics Heredity High-performance liquid chromatography Human Genetics Humans Life Sciences Microbial Genetics and Genomics Mutation Original Article Plant Genetics and Genomics Population genetics Pungent principles Quantitative trait loci Quantitative Trait Loci - genetics Sensation |
| title | Genetic analysis of pungency deficiency in Japanese chili pepper ‘Shishito’ (Capsicum annuum) revealed its unique heredity and brought the discovery of two genetic loci involved with the reduction of pungency |
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