An emerging field: Post‐translational modification in microbiome
Post‐translational modifications (PTMs) play an essential role in most biological processes. PTMs on human proteins have been extensively studied. Studies on bacterial PTMs are emerging, which demonstrate that bacterial PTMs are different from human PTMs in their types, mechanisms and functions. Few...
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Veröffentlicht in: | Proteomics (Weinheim) 2023-02, Vol.23 (3-4), p.e2100389-n/a |
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description | Post‐translational modifications (PTMs) play an essential role in most biological processes. PTMs on human proteins have been extensively studied. Studies on bacterial PTMs are emerging, which demonstrate that bacterial PTMs are different from human PTMs in their types, mechanisms and functions. Few PTM studies have been done on the microbiome. Here, we reviewed several studied PTMs in bacteria including phosphorylation, acetylation, succinylation, glycosylation, and proteases. We discussed the enzymes responsible for each PTM and their functions. We also summarized the current methods used to study microbiome PTMs and the observations demonstrating the roles of PTM in the microbe‐microbe interactions within the microbiome and their interactions with the environment or host. Although new methods and tools for PTM studies are still needed, the existing technologies have made great progress enabling a deeper understanding of the functional regulation of the microbiome. Large‐scale application of these microbiome‐wide PTM studies will provide a better understanding of the microbiome and its roles in the development of human diseases. |
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PTMs on human proteins have been extensively studied. Studies on bacterial PTMs are emerging, which demonstrate that bacterial PTMs are different from human PTMs in their types, mechanisms and functions. Few PTM studies have been done on the microbiome. Here, we reviewed several studied PTMs in bacteria including phosphorylation, acetylation, succinylation, glycosylation, and proteases. We discussed the enzymes responsible for each PTM and their functions. We also summarized the current methods used to study microbiome PTMs and the observations demonstrating the roles of PTM in the microbe‐microbe interactions within the microbiome and their interactions with the environment or host. Although new methods and tools for PTM studies are still needed, the existing technologies have made great progress enabling a deeper understanding of the functional regulation of the microbiome. Large‐scale application of these microbiome‐wide PTM studies will provide a better understanding of the microbiome and its roles in the development of human diseases.</description><identifier>ISSN: 1615-9853</identifier><identifier>EISSN: 1615-9861</identifier><identifier>DOI: 10.1002/pmic.202100389</identifier><identifier>PMID: 36239139</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Acetylation ; Bacteria ; bioinformatics ; Biological activity ; cell biology ; Glycosylation ; Humans ; metaproteomics ; microbiology ; microbiome ; Microbiomes ; Microbiota ; Microorganisms ; Peptide Hydrolases ; Phosphorylation ; post‐translational modifications ; Protein Processing, Post-Translational ; Translation</subject><ispartof>Proteomics (Weinheim), 2023-02, Vol.23 (3-4), p.e2100389-n/a</ispartof><rights>2022 Wiley‐VCH GmbH.</rights><rights>2022 Wiley-VCH GmbH.</rights><rights>2023 Wiley‐VCH GmbH.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3698-d4e7f7678499055c6bb47ec1bb988e5b26bc5bfdbf8b0edec60ccf87cd4f0583</citedby><cites>FETCH-LOGICAL-c3698-d4e7f7678499055c6bb47ec1bb988e5b26bc5bfdbf8b0edec60ccf87cd4f0583</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fpmic.202100389$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fpmic.202100389$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27922,27923,45572,45573</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36239139$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Duan, Haonan</creatorcontrib><creatorcontrib>Zhang, Xu</creatorcontrib><creatorcontrib>Figeys, Daniel</creatorcontrib><title>An emerging field: Post‐translational modification in microbiome</title><title>Proteomics (Weinheim)</title><addtitle>Proteomics</addtitle><description>Post‐translational modifications (PTMs) play an essential role in most biological processes. PTMs on human proteins have been extensively studied. Studies on bacterial PTMs are emerging, which demonstrate that bacterial PTMs are different from human PTMs in their types, mechanisms and functions. Few PTM studies have been done on the microbiome. Here, we reviewed several studied PTMs in bacteria including phosphorylation, acetylation, succinylation, glycosylation, and proteases. We discussed the enzymes responsible for each PTM and their functions. We also summarized the current methods used to study microbiome PTMs and the observations demonstrating the roles of PTM in the microbe‐microbe interactions within the microbiome and their interactions with the environment or host. Although new methods and tools for PTM studies are still needed, the existing technologies have made great progress enabling a deeper understanding of the functional regulation of the microbiome. Large‐scale application of these microbiome‐wide PTM studies will provide a better understanding of the microbiome and its roles in the development of human diseases.</description><subject>Acetylation</subject><subject>Bacteria</subject><subject>bioinformatics</subject><subject>Biological activity</subject><subject>cell biology</subject><subject>Glycosylation</subject><subject>Humans</subject><subject>metaproteomics</subject><subject>microbiology</subject><subject>microbiome</subject><subject>Microbiomes</subject><subject>Microbiota</subject><subject>Microorganisms</subject><subject>Peptide Hydrolases</subject><subject>Phosphorylation</subject><subject>post‐translational modifications</subject><subject>Protein Processing, Post-Translational</subject><subject>Translation</subject><issn>1615-9853</issn><issn>1615-9861</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkL1OwzAUhS0EoqWwMqJILCwp_oljm61U_FQqokN3K3bsylUSlzgV6sYj8Iw8CS4tHViY7j3Sd8_VOQBcIjhEEOLbVe30EEMcBeHiCPRRjmgqeI6ODzslPXAWwhJCxLhgp6BHckwEIqIP7kdNYmrTLlyzSKwzVXmXzHzovj4-u7ZoQlV0zjdFldS-dNbpH5m4Jol_W6-cr805OLFFFczFfg7A_PFhPn5Op69Pk_FommqSC56WmWGW5YxnQkBKda5UxoxGSgnODVU4V5oqWyrLFTSl0TnU2nKmy8xCyskA3OxsV61_W5vQydoFbaqqaIxfB4kZphgShLOIXv9Bl37dxhRbijGSxfAwUsMdFYOE0BorV62ri3YjEZTbcuW2XHkoNx5c7W3XqjblAf9tMwJ0B7y7ymz-sZOzl8kYESo4-QYnQIab</recordid><startdate>202302</startdate><enddate>202302</enddate><creator>Duan, Haonan</creator><creator>Zhang, Xu</creator><creator>Figeys, Daniel</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>202302</creationdate><title>An emerging field: Post‐translational modification in microbiome</title><author>Duan, Haonan ; Zhang, Xu ; Figeys, Daniel</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3698-d4e7f7678499055c6bb47ec1bb988e5b26bc5bfdbf8b0edec60ccf87cd4f0583</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Acetylation</topic><topic>Bacteria</topic><topic>bioinformatics</topic><topic>Biological activity</topic><topic>cell biology</topic><topic>Glycosylation</topic><topic>Humans</topic><topic>metaproteomics</topic><topic>microbiology</topic><topic>microbiome</topic><topic>Microbiomes</topic><topic>Microbiota</topic><topic>Microorganisms</topic><topic>Peptide Hydrolases</topic><topic>Phosphorylation</topic><topic>post‐translational modifications</topic><topic>Protein Processing, Post-Translational</topic><topic>Translation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Duan, Haonan</creatorcontrib><creatorcontrib>Zhang, Xu</creatorcontrib><creatorcontrib>Figeys, Daniel</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Proteomics (Weinheim)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Duan, Haonan</au><au>Zhang, Xu</au><au>Figeys, Daniel</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An emerging field: Post‐translational modification in microbiome</atitle><jtitle>Proteomics (Weinheim)</jtitle><addtitle>Proteomics</addtitle><date>2023-02</date><risdate>2023</risdate><volume>23</volume><issue>3-4</issue><spage>e2100389</spage><epage>n/a</epage><pages>e2100389-n/a</pages><issn>1615-9853</issn><eissn>1615-9861</eissn><abstract>Post‐translational modifications (PTMs) play an essential role in most biological processes. PTMs on human proteins have been extensively studied. Studies on bacterial PTMs are emerging, which demonstrate that bacterial PTMs are different from human PTMs in their types, mechanisms and functions. Few PTM studies have been done on the microbiome. Here, we reviewed several studied PTMs in bacteria including phosphorylation, acetylation, succinylation, glycosylation, and proteases. We discussed the enzymes responsible for each PTM and their functions. We also summarized the current methods used to study microbiome PTMs and the observations demonstrating the roles of PTM in the microbe‐microbe interactions within the microbiome and their interactions with the environment or host. Although new methods and tools for PTM studies are still needed, the existing technologies have made great progress enabling a deeper understanding of the functional regulation of the microbiome. Large‐scale application of these microbiome‐wide PTM studies will provide a better understanding of the microbiome and its roles in the development of human diseases.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>36239139</pmid><doi>10.1002/pmic.202100389</doi><tpages>17</tpages></addata></record> |
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subjects | Acetylation Bacteria bioinformatics Biological activity cell biology Glycosylation Humans metaproteomics microbiology microbiome Microbiomes Microbiota Microorganisms Peptide Hydrolases Phosphorylation post‐translational modifications Protein Processing, Post-Translational Translation |
title | An emerging field: Post‐translational modification in microbiome |
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