Genetic diversity, reassortment, and recombination of mammalian orthoreoviruses from Japanese porcine fecal samples
Mammalian orthoreoviruses (MRVs) are non-enveloped double-stranded RNA viruses with a broad host range. MRVs are prevalent worldwide, and in Japan, they have been isolated from various hosts, including humans, dogs, cats, wild boars, and pigs, and they have also been found in sewage. However, Japane...
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| Veröffentlicht in: | Archives of virology 2022-12, Vol.167 (12), p.2643-2652 |
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| creator | Fukase, Yuka Minami, Fujiko Masuda, Tsuneyuki Oi, Toru Takemae, Hitoshi Ishida, Hiroho Murakami, Hironobu Aihara, Naoyuki Shiga, Takanori Kamiie, Junichi Furuya, Tetsuya Mizutani, Tetsuya Oba, Mami Nagai, Makoto |
| description | Mammalian orthoreoviruses (MRVs) are non-enveloped double-stranded RNA viruses with a broad host range. MRVs are prevalent worldwide, and in Japan, they have been isolated from various hosts, including humans, dogs, cats, wild boars, and pigs, and they have also been found in sewage. However, Japanese porcine MRVs have not been genetically characterized. While investigating porcine enteric viruses including MRV, five MRVs were isolated from the feces of Japanese pigs using MA104 cell culture. Genetic analysis of the
S1
gene revealed that the Japanese porcine MRV isolates could be classified as MRV-2 and MRV-3. Whole genome analysis showed that Japanese porcine MRVs exhibited genetic diversity, although they shared sequence similarity with porcine MRV sequences in the DDBJ/EMBL/GenBank database. Several potential intragenetic reassortment events were detected among MRV strains from pigs, sewage, and humans in Japan, suggesting zoonotic transmission. Furthermore, homologous recombination events were identified in the
M1
and
S1
genes of Japanese porcine MRV. These findings imply that different strains of Japanese porcine MRV share a porcine MRV genomic backbone and have evolved through intragenetic reassortment and homologous recombination events. |
| doi_str_mv | 10.1007/s00705-022-05602-8 |
| format | Article |
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S1
gene revealed that the Japanese porcine MRV isolates could be classified as MRV-2 and MRV-3. Whole genome analysis showed that Japanese porcine MRVs exhibited genetic diversity, although they shared sequence similarity with porcine MRV sequences in the DDBJ/EMBL/GenBank database. Several potential intragenetic reassortment events were detected among MRV strains from pigs, sewage, and humans in Japan, suggesting zoonotic transmission. Furthermore, homologous recombination events were identified in the
M1
and
S1
genes of Japanese porcine MRV. These findings imply that different strains of Japanese porcine MRV share a porcine MRV genomic backbone and have evolved through intragenetic reassortment and homologous recombination events.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-022-05602-8</identifier><identifier>PMID: 36114317</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Biomedical and Life Sciences ; Biomedicine ; Cell culture ; Dogs ; Double-stranded RNA ; Feces ; Genetic analysis ; Genetic diversity ; Genetic Variation ; Homologous recombination ; Host range ; Host Specificity ; Humans ; Infectious Diseases ; Mammals ; Medical Microbiology ; Original Article ; Orthoreovirus, Mammalian - genetics ; Phylogeny ; RNA viruses ; S1 gene ; Sewage ; Swine ; Virology</subject><ispartof>Archives of virology, 2022-12, Vol.167 (12), p.2643-2652</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c485t-15affa63827fa49061f1877b6b4959544662c7a16ef9a2724a4be9438a9eabe73</citedby><cites>FETCH-LOGICAL-c485t-15affa63827fa49061f1877b6b4959544662c7a16ef9a2724a4be9438a9eabe73</cites><orcidid>0000-0001-5884-620X ; 0000-0002-4187-3217</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-022-05602-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-022-05602-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36114317$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fukase, Yuka</creatorcontrib><creatorcontrib>Minami, Fujiko</creatorcontrib><creatorcontrib>Masuda, Tsuneyuki</creatorcontrib><creatorcontrib>Oi, Toru</creatorcontrib><creatorcontrib>Takemae, Hitoshi</creatorcontrib><creatorcontrib>Ishida, Hiroho</creatorcontrib><creatorcontrib>Murakami, Hironobu</creatorcontrib><creatorcontrib>Aihara, Naoyuki</creatorcontrib><creatorcontrib>Shiga, Takanori</creatorcontrib><creatorcontrib>Kamiie, Junichi</creatorcontrib><creatorcontrib>Furuya, Tetsuya</creatorcontrib><creatorcontrib>Mizutani, Tetsuya</creatorcontrib><creatorcontrib>Oba, Mami</creatorcontrib><creatorcontrib>Nagai, Makoto</creatorcontrib><title>Genetic diversity, reassortment, and recombination of mammalian orthoreoviruses from Japanese porcine fecal samples</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Mammalian orthoreoviruses (MRVs) are non-enveloped double-stranded RNA viruses with a broad host range. MRVs are prevalent worldwide, and in Japan, they have been isolated from various hosts, including humans, dogs, cats, wild boars, and pigs, and they have also been found in sewage. However, Japanese porcine MRVs have not been genetically characterized. While investigating porcine enteric viruses including MRV, five MRVs were isolated from the feces of Japanese pigs using MA104 cell culture. Genetic analysis of the
S1
gene revealed that the Japanese porcine MRV isolates could be classified as MRV-2 and MRV-3. Whole genome analysis showed that Japanese porcine MRVs exhibited genetic diversity, although they shared sequence similarity with porcine MRV sequences in the DDBJ/EMBL/GenBank database. Several potential intragenetic reassortment events were detected among MRV strains from pigs, sewage, and humans in Japan, suggesting zoonotic transmission. Furthermore, homologous recombination events were identified in the
M1
and
S1
genes of Japanese porcine MRV. These findings imply that different strains of Japanese porcine MRV share a porcine MRV genomic backbone and have evolved through intragenetic reassortment and homologous recombination events.</description><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cell culture</subject><subject>Dogs</subject><subject>Double-stranded RNA</subject><subject>Feces</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Homologous recombination</subject><subject>Host range</subject><subject>Host Specificity</subject><subject>Humans</subject><subject>Infectious Diseases</subject><subject>Mammals</subject><subject>Medical Microbiology</subject><subject>Original Article</subject><subject>Orthoreovirus, Mammalian - genetics</subject><subject>Phylogeny</subject><subject>RNA viruses</subject><subject>S1 gene</subject><subject>Sewage</subject><subject>Swine</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kUtv1TAQRi1ERW8Lf4AFssSGRQO24_ixRBVtQZW6gXU0yR2DqzgOnqRS_z1ubwGJBRs_xmc-j3QYey3FeymE_UB1EV0jlGpEZ4Rq3DO2k7qtB-vdc7YTrdCNM8IdsxOiWyFqoe1esOPWyMpJu2N0iTOuceT7eIeF4np_xgsCUS5rwnk94zDva2XMaYgzrDHPPAeeICWYItRLWX_kgvkulo2QeCg58S-wwIyEfMlljDPygCNMnCAtE9JLdhRgInz1tJ-ybxefvp5fNdc3l5_PP143o3bd2sgOQgDTOmUDaC-MDNJZO5hB-853WhujRgvSYPCgrNKgB_S6deARBrTtKXt3yF1K_rkhrX2KNOI01dnyRr2y8iHFGV_Rt_-gt3krc52uUtp5KZwzlVIHaiyZqGDolxITlPteiv5BSX9Q0lcl_aOS3tWmN0_R25Bw_6flt4MKtAeA6tP8Hcvfv_8T-wvFYJf7</recordid><startdate>20221201</startdate><enddate>20221201</enddate><creator>Fukase, Yuka</creator><creator>Minami, Fujiko</creator><creator>Masuda, Tsuneyuki</creator><creator>Oi, Toru</creator><creator>Takemae, Hitoshi</creator><creator>Ishida, Hiroho</creator><creator>Murakami, Hironobu</creator><creator>Aihara, Naoyuki</creator><creator>Shiga, Takanori</creator><creator>Kamiie, Junichi</creator><creator>Furuya, Tetsuya</creator><creator>Mizutani, Tetsuya</creator><creator>Oba, Mami</creator><creator>Nagai, Makoto</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PJZUB</scope><scope>PKEHL</scope><scope>PPXIY</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-5884-620X</orcidid><orcidid>https://orcid.org/0000-0002-4187-3217</orcidid></search><sort><creationdate>20221201</creationdate><title>Genetic diversity, reassortment, and recombination of mammalian orthoreoviruses from Japanese porcine fecal samples</title><author>Fukase, Yuka ; Minami, Fujiko ; Masuda, Tsuneyuki ; Oi, Toru ; Takemae, Hitoshi ; Ishida, Hiroho ; Murakami, Hironobu ; Aihara, Naoyuki ; Shiga, Takanori ; Kamiie, Junichi ; Furuya, Tetsuya ; Mizutani, Tetsuya ; Oba, Mami ; Nagai, Makoto</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c485t-15affa63827fa49061f1877b6b4959544662c7a16ef9a2724a4be9438a9eabe73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cell culture</topic><topic>Dogs</topic><topic>Double-stranded RNA</topic><topic>Feces</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetic Variation</topic><topic>Homologous recombination</topic><topic>Host range</topic><topic>Host Specificity</topic><topic>Humans</topic><topic>Infectious Diseases</topic><topic>Mammals</topic><topic>Medical Microbiology</topic><topic>Original Article</topic><topic>Orthoreovirus, Mammalian - 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MRVs are prevalent worldwide, and in Japan, they have been isolated from various hosts, including humans, dogs, cats, wild boars, and pigs, and they have also been found in sewage. However, Japanese porcine MRVs have not been genetically characterized. While investigating porcine enteric viruses including MRV, five MRVs were isolated from the feces of Japanese pigs using MA104 cell culture. Genetic analysis of the
S1
gene revealed that the Japanese porcine MRV isolates could be classified as MRV-2 and MRV-3. Whole genome analysis showed that Japanese porcine MRVs exhibited genetic diversity, although they shared sequence similarity with porcine MRV sequences in the DDBJ/EMBL/GenBank database. Several potential intragenetic reassortment events were detected among MRV strains from pigs, sewage, and humans in Japan, suggesting zoonotic transmission. Furthermore, homologous recombination events were identified in the
M1
and
S1
genes of Japanese porcine MRV. These findings imply that different strains of Japanese porcine MRV share a porcine MRV genomic backbone and have evolved through intragenetic reassortment and homologous recombination events.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>36114317</pmid><doi>10.1007/s00705-022-05602-8</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-5884-620X</orcidid><orcidid>https://orcid.org/0000-0002-4187-3217</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Archives of virology, 2022-12, Vol.167 (12), p.2643-2652 |
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| subjects | Animals Biomedical and Life Sciences Biomedicine Cell culture Dogs Double-stranded RNA Feces Genetic analysis Genetic diversity Genetic Variation Homologous recombination Host range Host Specificity Humans Infectious Diseases Mammals Medical Microbiology Original Article Orthoreovirus, Mammalian - genetics Phylogeny RNA viruses S1 gene Sewage Swine Virology |
| title | Genetic diversity, reassortment, and recombination of mammalian orthoreoviruses from Japanese porcine fecal samples |
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