The complete chloroplast genome of Vitex trifolia L. (Lamiaceae)
The three-leaved chaste tree (Vitex trifolia) is a medicinal and ornamental plant widely distributed from East Africa to the Pacific but has no complete chloroplast genome sequence. We assembled and characterized the V. trifolia accession from the germplasm collection of the Institute of Crop Scienc...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2022-07, Vol.7 (7), p.1316-1318 |
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| creator | Gentallan Jr, Renerio P. Quiñones, Kristine J. O. Bartolome, Michael C. B. Madayag, Roselle E. Vera Cruz, Juan R. A. Cirunay, Angeleigh T. Endonela, Leah E. Borromeo, Teresita H. Altoveros, Nestor C. Lalusin, Antonio G. Alvaran, Bartimeus B. S. Magtoltol, Jessabel B. Cejalvo, Reneliza D. C. |
| description | The three-leaved chaste tree (Vitex trifolia) is a medicinal and ornamental plant widely distributed from East Africa to the Pacific but has no complete chloroplast genome sequence. We assembled and characterized the V. trifolia accession from the germplasm collection of the Institute of Crop Science, University of the Philippines Los Baños. The complete plastome sequence is 154,444-bp long with 131 coding genes comprising 87 mRNA genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis of the assembled genome, together with nine other Lamiaceae species, identified V. rotundifolia as its closest relative with available complete cpDNA sequence. The clustering also supports the genotypic similarity of the species belonging to trifolia group of the genus Vitex. |
| doi_str_mv | 10.1080/23802359.2022.2097027 |
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C.</creatorcontrib><description>The three-leaved chaste tree (Vitex trifolia) is a medicinal and ornamental plant widely distributed from East Africa to the Pacific but has no complete chloroplast genome sequence. We assembled and characterized the V. trifolia accession from the germplasm collection of the Institute of Crop Science, University of the Philippines Los Baños. The complete plastome sequence is 154,444-bp long with 131 coding genes comprising 87 mRNA genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis of the assembled genome, together with nine other Lamiaceae species, identified V. rotundifolia as its closest relative with available complete cpDNA sequence. The clustering also supports the genotypic similarity of the species belonging to trifolia group of the genus Vitex.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2022.2097027</identifier><identifier>PMID: 35866139</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Chloroplasts ; cpDNA ; Crop science ; Food science ; Genomes ; Genomics ; Germplasm ; Lamiaceae ; medicinal plant ; Medicinal plants ; Mitochondrial DNA ; mRNA ; Nucleotide sequence ; Ornamental plants ; Phylogenetics ; Phylogeny ; Plastome Announcement ; R&D ; Research & development ; rRNA ; three-leaved chaste tree ; Transfer RNA ; Trees ; tRNA ; Verbenaceae ; Vitex trifolia ; Viticoideae</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2022-07, Vol.7 (7), p.1316-1318</ispartof><rights>2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2022</rights><rights>2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution – Non-Commercial License http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 The Author(s). 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We assembled and characterized the V. trifolia accession from the germplasm collection of the Institute of Crop Science, University of the Philippines Los Baños. The complete plastome sequence is 154,444-bp long with 131 coding genes comprising 87 mRNA genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis of the assembled genome, together with nine other Lamiaceae species, identified V. rotundifolia as its closest relative with available complete cpDNA sequence. The clustering also supports the genotypic similarity of the species belonging to trifolia group of the genus Vitex.</description><subject>Chloroplasts</subject><subject>cpDNA</subject><subject>Crop science</subject><subject>Food science</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Germplasm</subject><subject>Lamiaceae</subject><subject>medicinal plant</subject><subject>Medicinal plants</subject><subject>Mitochondrial DNA</subject><subject>mRNA</subject><subject>Nucleotide sequence</subject><subject>Ornamental plants</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plastome Announcement</subject><subject>R&D</subject><subject>Research & development</subject><subject>rRNA</subject><subject>three-leaved chaste tree</subject><subject>Transfer RNA</subject><subject>Trees</subject><subject>tRNA</subject><subject>Verbenaceae</subject><subject>Vitex trifolia</subject><subject>Viticoideae</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU1vEzEQhlcIRKu2PwFpJS7lkOCP9dcFFVV8VIrUS-nV8trjxJF3HexNof8eL0kR5cDFHs2883g8b9O8wWiJkUTvCZWIUKaWBBFSDyUQES-a0zm_mAsv_4pPmotStgghzKkQSrxuTiiTnGOqTpuruw20Ng27CFMNNjHltIumTO0axjRAm3x7Hyb42U45-BSDaVfL9nJlhmAsGHh33rzyJha4ON5nzbfPn-6uvy5Wt19urj-uFpZRNS0Mwd5jh5gCpRgFiVwd2xDqBThLe8l6iqFjHbekVw4pRR3vveeCYy8xo2fNzYHrktnqXQ6DyY86maB_J1Jea5OnYCNo0QH3SJLahbreIdmZjjnKAJxSxsvK-nBg7fb9UJ-HccomPoM-r4xho9fpQSuimMS0Ai6PgJy-76FMegjFQoxmhLQvmnBVV00lJ1X69h_pNu3zWFc1qwRRhIr5d-ygsjmVksH_GQYjPVuunyzXs-X6aHntuzr0hdGnPJgfKUenJ_NYffTZjDYUTf-P-AVVka7P</recordid><startdate>20220703</startdate><enddate>20220703</enddate><creator>Gentallan Jr, Renerio P.</creator><creator>Quiñones, Kristine J. 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B. ; Madayag, Roselle E. ; Vera Cruz, Juan R. A. ; Cirunay, Angeleigh T. ; Endonela, Leah E. ; Borromeo, Teresita H. ; Altoveros, Nestor C. ; Lalusin, Antonio G. ; Alvaran, Bartimeus B. S. ; Magtoltol, Jessabel B. ; Cejalvo, Reneliza D. 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| subjects | Chloroplasts cpDNA Crop science Food science Genomes Genomics Germplasm Lamiaceae medicinal plant Medicinal plants Mitochondrial DNA mRNA Nucleotide sequence Ornamental plants Phylogenetics Phylogeny Plastome Announcement R&D Research & development rRNA three-leaved chaste tree Transfer RNA Trees tRNA Verbenaceae Vitex trifolia Viticoideae |
| title | The complete chloroplast genome of Vitex trifolia L. (Lamiaceae) |
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