Genomic insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India
Klebsiella quasipneumoniae is a recently described species and often misidentified as Klebsiella pneumoniae . Here, we report the genomic characterization of Klebsiella quasipneumoniae subsp. similipneumoniae (India238 strain) isolated from fish. The annotated genome acknowledged the presence of bla...
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| Veröffentlicht in: | Archives of microbiology 2022-08, Vol.204 (8), p.454-454, Article 454 |
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| creator | Sajeev, Sudha Hamza, Muneeb Sivaraman, Gopalan Krishnan Ghatak, Sandeep Ojha, Rakshit Mendem, Suresh Kumar Murugesan, Devi Raisen, Claire Shome, Bibek R. Holmes, Mark A. |
| description | Klebsiella quasipneumoniae
is a recently described species and often misidentified as
Klebsiella pneumoniae
. Here, we report the genomic characterization of
Klebsiella quasipneumoniae
subsp.
similipneumoniae
(India238 strain) isolated from fish. The annotated genome acknowledged the presence of
bla
CTX-M-15
,
bla
OKP-B-1
,
fosA5, oqxAB
and virulence genes. The strain with ST1699 and serotypes KL52 and OL103 also harboured insertion sequences (ISs): IS
Kpn26
and IS
Ec9
. Three complete phage genomes were identified in contigs 1 and 6 of the bacterial genome, enhancing the prospects of genome manipulation. The study highlights the pitfall of conventional microbiological identification methods to distinguish
K. pneumoniae
and
K. quasipneumoniae
. This is the first Indian study documenting the incidence of extended-spectrum beta-lactamase (ESBL)-producing
K. quasipneumoniae
subsp.
similipneumoniae
from a non-clinical environment, equipped with virulomes and associated mobile genetic elements. Given that fish can act as a potential vector for transmission of antimicrobial resistance genes, our findings have paramount importance on human health. |
| doi_str_mv | 10.1007/s00203-022-03071-w |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2685035337</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2685035337</sourcerecordid><originalsourceid>FETCH-LOGICAL-c352t-80ebbd68470fbf59613b17f4dd1924590e70e25a63b5c2a9169de036af73f82f3</originalsourceid><addsrcrecordid>eNp9kc1qHTEMhU1poTe3fYGuDN1kkUlle36XITRpSKCbFroz9ox843TGnlgzhLxMnrW-uYGULroSEt-RdDiMfRJwKgCaLwQgQRUgZQEKGlE8vGEbUarcNvLXW7bJU1m0nVLv2RHRHYCQbdtu2NMlhjj5nvtAfne7EI-OW1xMMZp-MZMh5HOKw9r7sOPXI1ryOI6G36-G_BxwnWLwBjmtluZTTn7y499zi2MMu714iZzwfsXQI18eZ-Si7jruUpx4ygf9yCeTfuPCnafbE34VBm8-sHfOjIQfX-qW_bz4-uP8W3Hz_fLq_Oym6FUll6IFtHao27IBZ13V1UJZ0bhyGEQny6oDbABlZWplq16aLl8eEFRtXKNcK53asuPD3uw1v0iLnjz1e6MB40pa1m0FqlKqyejnf9C7uKaQv9tTpQLVZXTL5IHqUyRK6PScfPb3qAXofWT6EJnOkennyPRDFqmDiDIcdpheV_9H9QdNrZxW</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2684303950</pqid></control><display><type>article</type><title>Genomic insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India</title><source>Springer Nature - Complete Springer Journals</source><creator>Sajeev, Sudha ; Hamza, Muneeb ; Sivaraman, Gopalan Krishnan ; Ghatak, Sandeep ; Ojha, Rakshit ; Mendem, Suresh Kumar ; Murugesan, Devi ; Raisen, Claire ; Shome, Bibek R. ; Holmes, Mark A.</creator><creatorcontrib>Sajeev, Sudha ; Hamza, Muneeb ; Sivaraman, Gopalan Krishnan ; Ghatak, Sandeep ; Ojha, Rakshit ; Mendem, Suresh Kumar ; Murugesan, Devi ; Raisen, Claire ; Shome, Bibek R. ; Holmes, Mark A.</creatorcontrib><description>Klebsiella quasipneumoniae
is a recently described species and often misidentified as
Klebsiella pneumoniae
. Here, we report the genomic characterization of
Klebsiella quasipneumoniae
subsp.
similipneumoniae
(India238 strain) isolated from fish. The annotated genome acknowledged the presence of
bla
CTX-M-15
,
bla
OKP-B-1
,
fosA5, oqxAB
and virulence genes. The strain with ST1699 and serotypes KL52 and OL103 also harboured insertion sequences (ISs): IS
Kpn26
and IS
Ec9
. Three complete phage genomes were identified in contigs 1 and 6 of the bacterial genome, enhancing the prospects of genome manipulation. The study highlights the pitfall of conventional microbiological identification methods to distinguish
K. pneumoniae
and
K. quasipneumoniae
. This is the first Indian study documenting the incidence of extended-spectrum beta-lactamase (ESBL)-producing
K. quasipneumoniae
subsp.
similipneumoniae
from a non-clinical environment, equipped with virulomes and associated mobile genetic elements. Given that fish can act as a potential vector for transmission of antimicrobial resistance genes, our findings have paramount importance on human health.</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-022-03071-w</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Antibiotics ; Antimicrobial agents ; Antimicrobial resistance ; Archives & records ; Automation ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cell Biology ; Drug resistance ; Ecology ; Fish ; Fishing ; Genes ; Genomes ; Genomics ; Identification ; Identification methods ; Insertion sequences ; Klebsiella ; Life Sciences ; Microbial Ecology ; Microbiology ; Pathogens ; Phages ; Plasmids ; Serotypes ; Short Communication ; Veterinary medicine ; Virulence ; β Lactamase</subject><ispartof>Archives of microbiology, 2022-08, Vol.204 (8), p.454-454, Article 454</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c352t-80ebbd68470fbf59613b17f4dd1924590e70e25a63b5c2a9169de036af73f82f3</citedby><cites>FETCH-LOGICAL-c352t-80ebbd68470fbf59613b17f4dd1924590e70e25a63b5c2a9169de036af73f82f3</cites><orcidid>0000-0003-0150-7295 ; 0000-0001-5123-7313 ; 0000-0003-4747-9162</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-022-03071-w$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-022-03071-w$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Sajeev, Sudha</creatorcontrib><creatorcontrib>Hamza, Muneeb</creatorcontrib><creatorcontrib>Sivaraman, Gopalan Krishnan</creatorcontrib><creatorcontrib>Ghatak, Sandeep</creatorcontrib><creatorcontrib>Ojha, Rakshit</creatorcontrib><creatorcontrib>Mendem, Suresh Kumar</creatorcontrib><creatorcontrib>Murugesan, Devi</creatorcontrib><creatorcontrib>Raisen, Claire</creatorcontrib><creatorcontrib>Shome, Bibek R.</creatorcontrib><creatorcontrib>Holmes, Mark A.</creatorcontrib><title>Genomic insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><description>Klebsiella quasipneumoniae
is a recently described species and often misidentified as
Klebsiella pneumoniae
. Here, we report the genomic characterization of
Klebsiella quasipneumoniae
subsp.
similipneumoniae
(India238 strain) isolated from fish. The annotated genome acknowledged the presence of
bla
CTX-M-15
,
bla
OKP-B-1
,
fosA5, oqxAB
and virulence genes. The strain with ST1699 and serotypes KL52 and OL103 also harboured insertion sequences (ISs): IS
Kpn26
and IS
Ec9
. Three complete phage genomes were identified in contigs 1 and 6 of the bacterial genome, enhancing the prospects of genome manipulation. The study highlights the pitfall of conventional microbiological identification methods to distinguish
K. pneumoniae
and
K. quasipneumoniae
. This is the first Indian study documenting the incidence of extended-spectrum beta-lactamase (ESBL)-producing
K. quasipneumoniae
subsp.
similipneumoniae
from a non-clinical environment, equipped with virulomes and associated mobile genetic elements. Given that fish can act as a potential vector for transmission of antimicrobial resistance genes, our findings have paramount importance on human health.</description><subject>Antibiotics</subject><subject>Antimicrobial agents</subject><subject>Antimicrobial resistance</subject><subject>Archives & records</subject><subject>Automation</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Drug resistance</subject><subject>Ecology</subject><subject>Fish</subject><subject>Fishing</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Identification</subject><subject>Identification methods</subject><subject>Insertion sequences</subject><subject>Klebsiella</subject><subject>Life Sciences</subject><subject>Microbial 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insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India</title><author>Sajeev, Sudha ; Hamza, Muneeb ; Sivaraman, Gopalan Krishnan ; Ghatak, Sandeep ; Ojha, Rakshit ; Mendem, Suresh Kumar ; Murugesan, Devi ; Raisen, Claire ; Shome, Bibek R. ; Holmes, Mark A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c352t-80ebbd68470fbf59613b17f4dd1924590e70e25a63b5c2a9169de036af73f82f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Antibiotics</topic><topic>Antimicrobial agents</topic><topic>Antimicrobial resistance</topic><topic>Archives & records</topic><topic>Automation</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Drug 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A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><date>2022-08-01</date><risdate>2022</risdate><volume>204</volume><issue>8</issue><spage>454</spage><epage>454</epage><pages>454-454</pages><artnum>454</artnum><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>Klebsiella quasipneumoniae
is a recently described species and often misidentified as
Klebsiella pneumoniae
. Here, we report the genomic characterization of
Klebsiella quasipneumoniae
subsp.
similipneumoniae
(India238 strain) isolated from fish. The annotated genome acknowledged the presence of
bla
CTX-M-15
,
bla
OKP-B-1
,
fosA5, oqxAB
and virulence genes. The strain with ST1699 and serotypes KL52 and OL103 also harboured insertion sequences (ISs): IS
Kpn26
and IS
Ec9
. Three complete phage genomes were identified in contigs 1 and 6 of the bacterial genome, enhancing the prospects of genome manipulation. The study highlights the pitfall of conventional microbiological identification methods to distinguish
K. pneumoniae
and
K. quasipneumoniae
. This is the first Indian study documenting the incidence of extended-spectrum beta-lactamase (ESBL)-producing
K. quasipneumoniae
subsp.
similipneumoniae
from a non-clinical environment, equipped with virulomes and associated mobile genetic elements. Given that fish can act as a potential vector for transmission of antimicrobial resistance genes, our findings have paramount importance on human health.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s00203-022-03071-w</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-0150-7295</orcidid><orcidid>https://orcid.org/0000-0001-5123-7313</orcidid><orcidid>https://orcid.org/0000-0003-4747-9162</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2022-08, Vol.204 (8), p.454-454, Article 454 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2685035337 |
| source | Springer Nature - Complete Springer Journals |
| subjects | Antibiotics Antimicrobial agents Antimicrobial resistance Archives & records Automation Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Drug resistance Ecology Fish Fishing Genes Genomes Genomics Identification Identification methods Insertion sequences Klebsiella Life Sciences Microbial Ecology Microbiology Pathogens Phages Plasmids Serotypes Short Communication Veterinary medicine Virulence β Lactamase |
| title | Genomic insights of beta-lactamase producing Klebsiella quasipneumoniae subsp. similipneumoniae belonging to sequence type 1699 from retail market fish, India |
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