CSE-GAN: A 3D conditional generative adversarial network with concurrent squeeze-and-excitation blocks for lung nodule segmentation
Lung nodule segmentation plays a crucial role in early-stage lung cancer diagnosis, and early detection of lung cancer can improve the survival rate of the patients. The approaches based on convolutional neural networks (CNN) have outperformed the traditional image processing approaches in various c...
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description | Lung nodule segmentation plays a crucial role in early-stage lung cancer diagnosis, and early detection of lung cancer can improve the survival rate of the patients. The approaches based on convolutional neural networks (CNN) have outperformed the traditional image processing approaches in various computer vision applications, including medical image analysis. Although multiple techniques based on convolutional neural networks have provided state-of-the-art performances for medical image segmentation tasks, these techniques still have some challenges. Two main challenges are data scarcity and class imbalance, which can cause overfitting resulting in poor performance. In this study, we propose an approach based on a 3D conditional generative adversarial network for lung nodule segmentation, which generates better segmentation results by learning the data distribution, leading to better accuracy. The generator in the proposed network is based on the famous U-Net architecture with a concurrent squeeze & excitation module. The discriminator is a simple classification network with a spatial squeeze & channel excitation module, differentiating between ground truth and fake segmentation. To deal with the overfitting, we implement patch-based training. We have evaluated the proposed approach on two datasets, LUNA16 data and a local dataset. We achieved significantly improved performances with dice coefficients of 80.74% and 76.36% and sensitivities of 85.46% and 82.56% for the LUNA test set and local dataset, respectively.
•A GAN-based approach is proposed for lung nodule segmentation using CT images.•We proposed a 3D conditional generative adversarial network.•Concurrent squeeze & excitation module is used in the 3D-UNet for the generator network.•Spatial squeeze & channel excitation module is utilized in the classification network for the discriminator network.•The network is trained on LUNA16 data and also, a local dataset is created to test the generalizability of the proposed network. |
doi_str_mv | 10.1016/j.compbiomed.2022.105781 |
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•A GAN-based approach is proposed for lung nodule segmentation using CT images.•We proposed a 3D conditional generative adversarial network.•Concurrent squeeze & excitation module is used in the 3D-UNet for the generator network.•Spatial squeeze & channel excitation module is utilized in the classification network for the discriminator network.•The network is trained on LUNA16 data and also, a local dataset is created to test the generalizability of the proposed network.</description><identifier>ISSN: 0010-4825</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2022.105781</identifier><language>eng</language><publisher>Oxford: Elsevier Ltd</publisher><subject>Artificial neural networks ; Computer vision ; Computer-aided diagnosis ; CT scan ; Datasets ; Deep learning ; Excitation ; Generative adversarial network ; Generative adversarial networks ; Image analysis ; Image processing ; Image segmentation ; Lung cancer ; Lung nodules ; Medical diagnosis ; Medical imaging ; Modules ; Neural networks ; Squeeze & excitation ; Survival</subject><ispartof>Computers in biology and medicine, 2022-08, Vol.147, p.105781-105781, Article 105781</ispartof><rights>2022 Elsevier Ltd</rights><rights>2022. Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c379t-b92c6954aa4deb9feabd8414d1542ed630edf0c594da8db7a5d125010d0d3ec23</citedby><cites>FETCH-LOGICAL-c379t-b92c6954aa4deb9feabd8414d1542ed630edf0c594da8db7a5d125010d0d3ec23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0010482522005480$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids></links><search><creatorcontrib>Tyagi, Shweta</creatorcontrib><creatorcontrib>Talbar, Sanjay N.</creatorcontrib><title>CSE-GAN: A 3D conditional generative adversarial network with concurrent squeeze-and-excitation blocks for lung nodule segmentation</title><title>Computers in biology and medicine</title><description>Lung nodule segmentation plays a crucial role in early-stage lung cancer diagnosis, and early detection of lung cancer can improve the survival rate of the patients. The approaches based on convolutional neural networks (CNN) have outperformed the traditional image processing approaches in various computer vision applications, including medical image analysis. Although multiple techniques based on convolutional neural networks have provided state-of-the-art performances for medical image segmentation tasks, these techniques still have some challenges. Two main challenges are data scarcity and class imbalance, which can cause overfitting resulting in poor performance. In this study, we propose an approach based on a 3D conditional generative adversarial network for lung nodule segmentation, which generates better segmentation results by learning the data distribution, leading to better accuracy. The generator in the proposed network is based on the famous U-Net architecture with a concurrent squeeze & excitation module. The discriminator is a simple classification network with a spatial squeeze & channel excitation module, differentiating between ground truth and fake segmentation. To deal with the overfitting, we implement patch-based training. We have evaluated the proposed approach on two datasets, LUNA16 data and a local dataset. We achieved significantly improved performances with dice coefficients of 80.74% and 76.36% and sensitivities of 85.46% and 82.56% for the LUNA test set and local dataset, respectively.
•A GAN-based approach is proposed for lung nodule segmentation using CT images.•We proposed a 3D conditional generative adversarial network.•Concurrent squeeze & excitation module is used in the 3D-UNet for the generator network.•Spatial squeeze & channel excitation module is utilized in the classification network for the discriminator network.•The network is trained on LUNA16 data and also, a local dataset is created to test the generalizability of the proposed network.</description><subject>Artificial neural networks</subject><subject>Computer vision</subject><subject>Computer-aided diagnosis</subject><subject>CT scan</subject><subject>Datasets</subject><subject>Deep learning</subject><subject>Excitation</subject><subject>Generative adversarial network</subject><subject>Generative adversarial networks</subject><subject>Image analysis</subject><subject>Image processing</subject><subject>Image segmentation</subject><subject>Lung cancer</subject><subject>Lung nodules</subject><subject>Medical diagnosis</subject><subject>Medical imaging</subject><subject>Modules</subject><subject>Neural networks</subject><subject>Squeeze & excitation</subject><subject>Survival</subject><issn>0010-4825</issn><issn>1879-0534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkc1vEzEQxS1UJNLS_8ESFy6b2l7vF7c09AOpggP0bHk9s8Hprh1sbwpc-cfrNJWQuHAaafR7TzPvEUI5W3LG64vt0vhp11s_ISwFEyKvq6blr8iCt01XsKqUJ2TBGGeFbEX1hpzGuGWMSVayBfmz_npV3Kw-f6ArWn6kxjuwyXqnR7pBh0Enu0eqYY8h6mDz2mF69OGBPtr0_cCbOQR0icYfM-JvLLSDAn8am_TBh_ajNw-RDj7QcXYb6jzMI9KImymrnpm35PWgx4jnL_OM3F9ffVvfFndfbj6tV3eFKZsuFX0nTN1VUmsJ2HcD6h5aySXwSgqEumQIAzNVJ0G30De6Ai6q_DcwKNGI8oy8P_rugs_HxqQmGw2Oo3bo56hEne1yMLzO6Lt_0K2fQ07lmarbpuGCZ6o9Uib4GAMOahfspMMvxZk6tKO26m876tCOOraTpZdHKeaH9xaDisaiMwg2oEkKvP2_yROmhJ_G</recordid><startdate>202208</startdate><enddate>202208</enddate><creator>Tyagi, Shweta</creator><creator>Talbar, Sanjay N.</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AL</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0N</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>M7Z</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>202208</creationdate><title>CSE-GAN: A 3D conditional generative adversarial network with concurrent squeeze-and-excitation blocks for lung nodule segmentation</title><author>Tyagi, Shweta ; Talbar, Sanjay N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c379t-b92c6954aa4deb9feabd8414d1542ed630edf0c594da8db7a5d125010d0d3ec23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Artificial neural networks</topic><topic>Computer vision</topic><topic>Computer-aided diagnosis</topic><topic>CT scan</topic><topic>Datasets</topic><topic>Deep learning</topic><topic>Excitation</topic><topic>Generative adversarial network</topic><topic>Generative adversarial networks</topic><topic>Image analysis</topic><topic>Image processing</topic><topic>Image segmentation</topic><topic>Lung cancer</topic><topic>Lung nodules</topic><topic>Medical diagnosis</topic><topic>Medical imaging</topic><topic>Modules</topic><topic>Neural networks</topic><topic>Squeeze & excitation</topic><topic>Survival</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tyagi, Shweta</creatorcontrib><creatorcontrib>Talbar, Sanjay N.</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer Science Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Computing Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Biochemistry Abstracts 1</collection><collection>Research Library (Corporate)</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Computers in biology and medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tyagi, Shweta</au><au>Talbar, Sanjay N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>CSE-GAN: A 3D conditional generative adversarial network with concurrent squeeze-and-excitation blocks for lung nodule segmentation</atitle><jtitle>Computers in biology and medicine</jtitle><date>2022-08</date><risdate>2022</risdate><volume>147</volume><spage>105781</spage><epage>105781</epage><pages>105781-105781</pages><artnum>105781</artnum><issn>0010-4825</issn><eissn>1879-0534</eissn><abstract>Lung nodule segmentation plays a crucial role in early-stage lung cancer diagnosis, and early detection of lung cancer can improve the survival rate of the patients. The approaches based on convolutional neural networks (CNN) have outperformed the traditional image processing approaches in various computer vision applications, including medical image analysis. Although multiple techniques based on convolutional neural networks have provided state-of-the-art performances for medical image segmentation tasks, these techniques still have some challenges. Two main challenges are data scarcity and class imbalance, which can cause overfitting resulting in poor performance. In this study, we propose an approach based on a 3D conditional generative adversarial network for lung nodule segmentation, which generates better segmentation results by learning the data distribution, leading to better accuracy. The generator in the proposed network is based on the famous U-Net architecture with a concurrent squeeze & excitation module. The discriminator is a simple classification network with a spatial squeeze & channel excitation module, differentiating between ground truth and fake segmentation. To deal with the overfitting, we implement patch-based training. We have evaluated the proposed approach on two datasets, LUNA16 data and a local dataset. We achieved significantly improved performances with dice coefficients of 80.74% and 76.36% and sensitivities of 85.46% and 82.56% for the LUNA test set and local dataset, respectively.
•A GAN-based approach is proposed for lung nodule segmentation using CT images.•We proposed a 3D conditional generative adversarial network.•Concurrent squeeze & excitation module is used in the 3D-UNet for the generator network.•Spatial squeeze & channel excitation module is utilized in the classification network for the discriminator network.•The network is trained on LUNA16 data and also, a local dataset is created to test the generalizability of the proposed network.</abstract><cop>Oxford</cop><pub>Elsevier Ltd</pub><doi>10.1016/j.compbiomed.2022.105781</doi><tpages>1</tpages></addata></record> |
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subjects | Artificial neural networks Computer vision Computer-aided diagnosis CT scan Datasets Deep learning Excitation Generative adversarial network Generative adversarial networks Image analysis Image processing Image segmentation Lung cancer Lung nodules Medical diagnosis Medical imaging Modules Neural networks Squeeze & excitation Survival |
title | CSE-GAN: A 3D conditional generative adversarial network with concurrent squeeze-and-excitation blocks for lung nodule segmentation |
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