riboCleaner: a pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants

Abstract Motivation Analysis of gene expression data can be crucial for elucidating biological relationships within living organisms. However, accurate quantification of gene expression relies directly upon the accuracy of the reference genome or transcriptome to which the expression data are mapped...

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Veröffentlicht in:	Bioinformatics 2022-08, Vol.38 (15), p.3840-3843
Hauptverfasser:	Huang, Pu, Davis, Erin, Cao, Xia, Cameron, Hunter J
Format:	Artikel
Sprache:	eng
Schlagworte:	DNA, Ribosomal Molecular Sequence Annotation Plants - genetics RNA, Ribosomal - genetics RNA-Seq Sequence Analysis, RNA - methods Software
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