Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina
In this study, a novel bacterium designated F3b2 T was isolated from the gut sample of weaver ant Oecophylla smaragdina and characterised. Strain F3b2 T was a Gram-negative, aerobic, non-motile, ovoid-shaped bacterium and grows optimally at 28–30 °C. Its major respiratory quinone is ubiquinone 10 (Q...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2022-08, Vol.115 (8), p.995-1007 |
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| container_title | Antonie van Leeuwenhoek |
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| creator | Chua, Kah-Ooi Liew, Yvonne Jing Mei See-Too, Wah-Seng Tan, Jia-Yi Yong, Hoi-Sen Yin, Wai-Fong Chan, Kok-Gan |
| description | In this study, a novel bacterium designated F3b2
T
was isolated from the gut sample of weaver ant
Oecophylla smaragdina
and characterised. Strain F3b2
T
was a Gram-negative, aerobic, non-motile, ovoid-shaped bacterium and grows optimally at 28–30 °C. Its major respiratory quinone is ubiquinone 10 (Q-10) and the major fatty acids are C
18:1
ω
7
c
, C
19:0
cyclo
ω
8
c
and C
16:0
, representing 85% of the total fatty acids. The 16S rRNA gene sequence of strain F3b2
T
was highest in similarity to that of
Oecophyllibacter saccharovorans
DSM106907
T
and
Swingsia samuieinsis
NBRC 107927
T
at 94.35% and 91.96%, respectively. A 16S rRNA gene-based phylogenetic analysis and a core genes-based phylogenomic analysis placed strain F3b2
T
in a distinct lineage in the family
Acetobacteraceae
. The phylogenetic placement was supported by lower than species delineation threshold average nucleotide identity (ANI) (≤ 70.2%), in silico DNA-DNA hybridization (DDH) (≤ 39.5%) and average amino acid identity (AAI) (≤ 63.5%) values between strain F3b2
T
and closest neighbours. These overall genome relatedness indices also supported the assignment of strain F3b2
T
to a novel genus within
Acetobacteraceae
. The genome of strain F3b2
T
was 1.96 Mb with 60.4% G + C DNA content. Based on these results, strain F3b2
T
represented a novel taxon of
Acetobacteraceae
, for which we proposed the name
Formicincola oecophyllae
gen. nov. sp. nov., and strain F3b2
T
(= LMG 30590
T
= DSM 106908
T
= NBRC 113640
T
= KCTC 62951
T
) as the type strain. |
| doi_str_mv | 10.1007/s10482-022-01750-8 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2674345522</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2674345522</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-396dfeef4c995c1c75e64ec6b2051189902fae127f91527166fac7f7bdde48ef3</originalsourceid><addsrcrecordid>eNp9kcFu3CAQhlHVKNlu8wI9REi99FBvABswx2jVtJUi5ZKcEcbDxpFtNuBNtA_Rd-5knaZSDjmgAfH9_wz8hHzhbMUZ0-eZs6oWBRO4uJasqD-QBZdaFEYZ85EsGGNloZgWJ-RTzvd4NKrWx-SklEpXRukF-XMZ09D5bvSxdzSCj9u7fd87oBsYV3SMjyuat_PmO3XPFXo6wNBAojHQ6Q5ocEPX7-mFhyk2zk-QnAd06DJ6TtDSkOJwIJ_APaLOjRO9fm1F8-CS27Td6D6To-D6DKcvdUluL3_crH8VV9c_f68vrgpfajkVpVFtAAiVN0Z67rUEVYFXjWCS89oYJoIDLnQwXArNlQrO66CbtoWqhlAuybfZd5viww7yZIcue8BhRoi7bAV-T1lJKQSiX9-g93GXRpwOKcMVQ3eJlJgpn2LOCYLdpg6ftbec2eew7ByWxbDsISxbo-jsxXrXDNC-Sv6lg0A5Axmvxg2k_73fsf0LNc6gmA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2691601665</pqid></control><display><type>article</type><title>Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina</title><source>Springer Nature</source><creator>Chua, Kah-Ooi ; Liew, Yvonne Jing Mei ; See-Too, Wah-Seng ; Tan, Jia-Yi ; Yong, Hoi-Sen ; Yin, Wai-Fong ; Chan, Kok-Gan</creator><creatorcontrib>Chua, Kah-Ooi ; Liew, Yvonne Jing Mei ; See-Too, Wah-Seng ; Tan, Jia-Yi ; Yong, Hoi-Sen ; Yin, Wai-Fong ; Chan, Kok-Gan</creatorcontrib><description>In this study, a novel bacterium designated F3b2
T
was isolated from the gut sample of weaver ant
Oecophylla smaragdina
and characterised. Strain F3b2
T
was a Gram-negative, aerobic, non-motile, ovoid-shaped bacterium and grows optimally at 28–30 °C. Its major respiratory quinone is ubiquinone 10 (Q-10) and the major fatty acids are C
18:1
ω
7
c
, C
19:0
cyclo
ω
8
c
and C
16:0
, representing 85% of the total fatty acids. The 16S rRNA gene sequence of strain F3b2
T
was highest in similarity to that of
Oecophyllibacter saccharovorans
DSM106907
T
and
Swingsia samuieinsis
NBRC 107927
T
at 94.35% and 91.96%, respectively. A 16S rRNA gene-based phylogenetic analysis and a core genes-based phylogenomic analysis placed strain F3b2
T
in a distinct lineage in the family
Acetobacteraceae
. The phylogenetic placement was supported by lower than species delineation threshold average nucleotide identity (ANI) (≤ 70.2%), in silico DNA-DNA hybridization (DDH) (≤ 39.5%) and average amino acid identity (AAI) (≤ 63.5%) values between strain F3b2
T
and closest neighbours. These overall genome relatedness indices also supported the assignment of strain F3b2
T
to a novel genus within
Acetobacteraceae
. The genome of strain F3b2
T
was 1.96 Mb with 60.4% G + C DNA content. Based on these results, strain F3b2
T
represented a novel taxon of
Acetobacteraceae
, for which we proposed the name
Formicincola oecophyllae
gen. nov. sp. nov., and strain F3b2
T
(= LMG 30590
T
= DSM 106908
T
= NBRC 113640
T
= KCTC 62951
T
) as the type strain.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-022-01750-8</identifier><identifier>PMID: 35674967</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Acetobacteraceae ; Amino acids ; Bacteria ; Biomedical and Life Sciences ; Deoxyribonucleic acid ; DNA ; Fatty acids ; Genomes ; Hybridization ; Life Sciences ; Medical Microbiology ; Microbiology ; New species ; Nucleotides ; Oecophylla smaragdina ; Original Paper ; Phylogenetics ; Phylogeny ; Plant Sciences ; Quinones ; rRNA 16S ; Soil Science & Conservation ; Ubiquinone</subject><ispartof>Antonie van Leeuwenhoek, 2022-08, Vol.115 (8), p.995-1007</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-396dfeef4c995c1c75e64ec6b2051189902fae127f91527166fac7f7bdde48ef3</citedby><cites>FETCH-LOGICAL-c375t-396dfeef4c995c1c75e64ec6b2051189902fae127f91527166fac7f7bdde48ef3</cites><orcidid>0000-0002-1883-1115</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-022-01750-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-022-01750-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35674967$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chua, Kah-Ooi</creatorcontrib><creatorcontrib>Liew, Yvonne Jing Mei</creatorcontrib><creatorcontrib>See-Too, Wah-Seng</creatorcontrib><creatorcontrib>Tan, Jia-Yi</creatorcontrib><creatorcontrib>Yong, Hoi-Sen</creatorcontrib><creatorcontrib>Yin, Wai-Fong</creatorcontrib><creatorcontrib>Chan, Kok-Gan</creatorcontrib><title>Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>In this study, a novel bacterium designated F3b2
T
was isolated from the gut sample of weaver ant
Oecophylla smaragdina
and characterised. Strain F3b2
T
was a Gram-negative, aerobic, non-motile, ovoid-shaped bacterium and grows optimally at 28–30 °C. Its major respiratory quinone is ubiquinone 10 (Q-10) and the major fatty acids are C
18:1
ω
7
c
, C
19:0
cyclo
ω
8
c
and C
16:0
, representing 85% of the total fatty acids. The 16S rRNA gene sequence of strain F3b2
T
was highest in similarity to that of
Oecophyllibacter saccharovorans
DSM106907
T
and
Swingsia samuieinsis
NBRC 107927
T
at 94.35% and 91.96%, respectively. A 16S rRNA gene-based phylogenetic analysis and a core genes-based phylogenomic analysis placed strain F3b2
T
in a distinct lineage in the family
Acetobacteraceae
. The phylogenetic placement was supported by lower than species delineation threshold average nucleotide identity (ANI) (≤ 70.2%), in silico DNA-DNA hybridization (DDH) (≤ 39.5%) and average amino acid identity (AAI) (≤ 63.5%) values between strain F3b2
T
and closest neighbours. These overall genome relatedness indices also supported the assignment of strain F3b2
T
to a novel genus within
Acetobacteraceae
. The genome of strain F3b2
T
was 1.96 Mb with 60.4% G + C DNA content. Based on these results, strain F3b2
T
represented a novel taxon of
Acetobacteraceae
, for which we proposed the name
Formicincola oecophyllae
gen. nov. sp. nov., and strain F3b2
T
(= LMG 30590
T
= DSM 106908
T
= NBRC 113640
T
= KCTC 62951
T
) as the type strain.</description><subject>Acetobacteraceae</subject><subject>Amino acids</subject><subject>Bacteria</subject><subject>Biomedical and Life Sciences</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fatty acids</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleotides</subject><subject>Oecophylla smaragdina</subject><subject>Original Paper</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Quinones</subject><subject>rRNA 16S</subject><subject>Soil Science & Conservation</subject><subject>Ubiquinone</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kcFu3CAQhlHVKNlu8wI9REi99FBvABswx2jVtJUi5ZKcEcbDxpFtNuBNtA_Rd-5knaZSDjmgAfH9_wz8hHzhbMUZ0-eZs6oWBRO4uJasqD-QBZdaFEYZ85EsGGNloZgWJ-RTzvd4NKrWx-SklEpXRukF-XMZ09D5bvSxdzSCj9u7fd87oBsYV3SMjyuat_PmO3XPFXo6wNBAojHQ6Q5ocEPX7-mFhyk2zk-QnAd06DJ6TtDSkOJwIJ_APaLOjRO9fm1F8-CS27Td6D6To-D6DKcvdUluL3_crH8VV9c_f68vrgpfajkVpVFtAAiVN0Z67rUEVYFXjWCS89oYJoIDLnQwXArNlQrO66CbtoWqhlAuybfZd5viww7yZIcue8BhRoi7bAV-T1lJKQSiX9-g93GXRpwOKcMVQ3eJlJgpn2LOCYLdpg6ftbec2eew7ByWxbDsISxbo-jsxXrXDNC-Sv6lg0A5Axmvxg2k_73fsf0LNc6gmA</recordid><startdate>20220801</startdate><enddate>20220801</enddate><creator>Chua, Kah-Ooi</creator><creator>Liew, Yvonne Jing Mei</creator><creator>See-Too, Wah-Seng</creator><creator>Tan, Jia-Yi</creator><creator>Yong, Hoi-Sen</creator><creator>Yin, Wai-Fong</creator><creator>Chan, Kok-Gan</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-1883-1115</orcidid></search><sort><creationdate>20220801</creationdate><title>Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina</title><author>Chua, Kah-Ooi ; Liew, Yvonne Jing Mei ; See-Too, Wah-Seng ; Tan, Jia-Yi ; Yong, Hoi-Sen ; Yin, Wai-Fong ; Chan, Kok-Gan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-396dfeef4c995c1c75e64ec6b2051189902fae127f91527166fac7f7bdde48ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Acetobacteraceae</topic><topic>Amino acids</topic><topic>Bacteria</topic><topic>Biomedical and Life Sciences</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Fatty acids</topic><topic>Genomes</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nucleotides</topic><topic>Oecophylla smaragdina</topic><topic>Original Paper</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Quinones</topic><topic>rRNA 16S</topic><topic>Soil Science & Conservation</topic><topic>Ubiquinone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chua, Kah-Ooi</creatorcontrib><creatorcontrib>Liew, Yvonne Jing Mei</creatorcontrib><creatorcontrib>See-Too, Wah-Seng</creatorcontrib><creatorcontrib>Tan, Jia-Yi</creatorcontrib><creatorcontrib>Yong, Hoi-Sen</creatorcontrib><creatorcontrib>Yin, Wai-Fong</creatorcontrib><creatorcontrib>Chan, Kok-Gan</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical 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BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chua, Kah-Ooi</au><au>Liew, Yvonne Jing Mei</au><au>See-Too, Wah-Seng</au><au>Tan, Jia-Yi</au><au>Yong, Hoi-Sen</au><au>Yin, Wai-Fong</au><au>Chan, Kok-Gan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2022-08-01</date><risdate>2022</risdate><volume>115</volume><issue>8</issue><spage>995</spage><epage>1007</epage><pages>995-1007</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>In this study, a novel bacterium designated F3b2
T
was isolated from the gut sample of weaver ant
Oecophylla smaragdina
and characterised. Strain F3b2
T
was a Gram-negative, aerobic, non-motile, ovoid-shaped bacterium and grows optimally at 28–30 °C. Its major respiratory quinone is ubiquinone 10 (Q-10) and the major fatty acids are C
18:1
ω
7
c
, C
19:0
cyclo
ω
8
c
and C
16:0
, representing 85% of the total fatty acids. The 16S rRNA gene sequence of strain F3b2
T
was highest in similarity to that of
Oecophyllibacter saccharovorans
DSM106907
T
and
Swingsia samuieinsis
NBRC 107927
T
at 94.35% and 91.96%, respectively. A 16S rRNA gene-based phylogenetic analysis and a core genes-based phylogenomic analysis placed strain F3b2
T
in a distinct lineage in the family
Acetobacteraceae
. The phylogenetic placement was supported by lower than species delineation threshold average nucleotide identity (ANI) (≤ 70.2%), in silico DNA-DNA hybridization (DDH) (≤ 39.5%) and average amino acid identity (AAI) (≤ 63.5%) values between strain F3b2
T
and closest neighbours. These overall genome relatedness indices also supported the assignment of strain F3b2
T
to a novel genus within
Acetobacteraceae
. The genome of strain F3b2
T
was 1.96 Mb with 60.4% G + C DNA content. Based on these results, strain F3b2
T
represented a novel taxon of
Acetobacteraceae
, for which we proposed the name
Formicincola oecophyllae
gen. nov. sp. nov., and strain F3b2
T
(= LMG 30590
T
= DSM 106908
T
= NBRC 113640
T
= KCTC 62951
T
) as the type strain.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>35674967</pmid><doi>10.1007/s10482-022-01750-8</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-1883-1115</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0003-6072 |
| ispartof | Antonie van Leeuwenhoek, 2022-08, Vol.115 (8), p.995-1007 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2674345522 |
| source | Springer Nature |
| subjects | Acetobacteraceae Amino acids Bacteria Biomedical and Life Sciences Deoxyribonucleic acid DNA Fatty acids Genomes Hybridization Life Sciences Medical Microbiology Microbiology New species Nucleotides Oecophylla smaragdina Original Paper Phylogenetics Phylogeny Plant Sciences Quinones rRNA 16S Soil Science & Conservation Ubiquinone |
| title | Formicincola oecophyllae gen. nov. sp. nov., a novel member of the family Acetobacteraceae isolated from the weaver ant Oecophylla smaragdina |
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