Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought
Summary Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trial...
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Veröffentlicht in: | Environmental microbiology 2022-08, Vol.24 (8), p.3529-3548 |
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creator | Blakney, Andrew J. C. Bainard, Luke D. St‐Arnaud, Marc Hijri, Mohamed |
description | Summary
Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trials; the following year these plots were planted with five different Brassicaceae species. We hypothesized that the previously established soil histories would continue to structure the subsequent Brassicaceae bacterial root and rhizosphere communities. We used a MiSeq 16S rRNA metabarcoding strategy to determine the impact of different soil histories on the structure and biodiversity of the bacterial root and rhizosphere communities from the five different Brassicaceae host plants. We found that the Brassicaceae hosts were consistently significant factors in structuring the bacterial communities. Four host plants (Sinapis alba, Brassica napus, B. juncea, B. carinata) formed similar bacterial communities, regardless of different soil histories. Camelina sativa host plants structured phylogenetically distinct bacterial communities compared to the other hosts, particularly in their roots. Soil history established the previous year was only a significant factor for bacterial community structure when the feedback of the Brassicaceae host plants was weakened, potentially due to limited soil moisture during a dry year. Understanding how soil history is involved in the structure and biodiversity of bacterial communities through time is a limitation in microbial ecology and is required for employing microbiome technologies in improving agricultural systems. |
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Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trials; the following year these plots were planted with five different Brassicaceae species. We hypothesized that the previously established soil histories would continue to structure the subsequent Brassicaceae bacterial root and rhizosphere communities. We used a MiSeq 16S rRNA metabarcoding strategy to determine the impact of different soil histories on the structure and biodiversity of the bacterial root and rhizosphere communities from the five different Brassicaceae host plants. We found that the Brassicaceae hosts were consistently significant factors in structuring the bacterial communities. Four host plants (Sinapis alba, Brassica napus, B. juncea, B. carinata) formed similar bacterial communities, regardless of different soil histories. Camelina sativa host plants structured phylogenetically distinct bacterial communities compared to the other hosts, particularly in their roots. Soil history established the previous year was only a significant factor for bacterial community structure when the feedback of the Brassicaceae host plants was weakened, potentially due to limited soil moisture during a dry year. Understanding how soil history is involved in the structure and biodiversity of bacterial communities through time is a limitation in microbial ecology and is required for employing microbiome technologies in improving agricultural systems.</description><identifier>ISSN: 1462-2912</identifier><identifier>EISSN: 1462-2920</identifier><identifier>DOI: 10.1111/1462-2920.16046</identifier><identifier>PMID: 35590462</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Bacteria ; Biodiversity ; Brassica ; Brassicaceae ; Butterflies & moths ; Community structure ; Drought ; Feedback ; Host plants ; Hosts ; Microbiomes ; Microorganisms ; Moisture effects ; Phylogeny ; Plants ; Rhizosphere ; rRNA 16S ; Soil ; Soil microorganisms ; Soil moisture ; Soil structure</subject><ispartof>Environmental microbiology, 2022-08, Vol.24 (8), p.3529-3548</ispartof><rights>2022 Society for Applied Microbiology and John Wiley & Sons Ltd.</rights><rights>This article is protected by copyright. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4126-b2e89a68e1de720d936551cbbb5796b7c2b26ea986c10cf5fd4e216d317d67f33</citedby><cites>FETCH-LOGICAL-c4126-b2e89a68e1de720d936551cbbb5796b7c2b26ea986c10cf5fd4e216d317d67f33</cites><orcidid>0000-0001-6112-8372 ; 0000-0001-7145-9642 ; 0000-0002-6679-6190 ; 0000-0002-7181-9895</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1462-2920.16046$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1462-2920.16046$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35590462$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Blakney, Andrew J. C.</creatorcontrib><creatorcontrib>Bainard, Luke D.</creatorcontrib><creatorcontrib>St‐Arnaud, Marc</creatorcontrib><creatorcontrib>Hijri, Mohamed</creatorcontrib><title>Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought</title><title>Environmental microbiology</title><addtitle>Environ Microbiol</addtitle><description>Summary
Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trials; the following year these plots were planted with five different Brassicaceae species. We hypothesized that the previously established soil histories would continue to structure the subsequent Brassicaceae bacterial root and rhizosphere communities. We used a MiSeq 16S rRNA metabarcoding strategy to determine the impact of different soil histories on the structure and biodiversity of the bacterial root and rhizosphere communities from the five different Brassicaceae host plants. We found that the Brassicaceae hosts were consistently significant factors in structuring the bacterial communities. Four host plants (Sinapis alba, Brassica napus, B. juncea, B. carinata) formed similar bacterial communities, regardless of different soil histories. Camelina sativa host plants structured phylogenetically distinct bacterial communities compared to the other hosts, particularly in their roots. Soil history established the previous year was only a significant factor for bacterial community structure when the feedback of the Brassicaceae host plants was weakened, potentially due to limited soil moisture during a dry year. Understanding how soil history is involved in the structure and biodiversity of bacterial communities through time is a limitation in microbial ecology and is required for employing microbiome technologies in improving agricultural systems.</description><subject>Bacteria</subject><subject>Biodiversity</subject><subject>Brassica</subject><subject>Brassicaceae</subject><subject>Butterflies & moths</subject><subject>Community structure</subject><subject>Drought</subject><subject>Feedback</subject><subject>Host plants</subject><subject>Hosts</subject><subject>Microbiomes</subject><subject>Microorganisms</subject><subject>Moisture effects</subject><subject>Phylogeny</subject><subject>Plants</subject><subject>Rhizosphere</subject><subject>rRNA 16S</subject><subject>Soil</subject><subject>Soil microorganisms</subject><subject>Soil moisture</subject><subject>Soil structure</subject><issn>1462-2912</issn><issn>1462-2920</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNqFkT1v1TAUhq0KRD9g7oYsMdCBS20ntm9GqFqoVMQCs-U4J8RtEqc-Dm3-RH9zfXvLHbrgxfarx6989BByzNlnntcpL5VYiUrkq2Kl2iMHu-TV7szFPjlEvGaM60KzN2S_kLLKuDggD1-jRfTOOrBAu4CJTr0dE9LB4g1NHdAWoKmtu6FtDMNTMkX468OMdAEbPyLF4HvaeUwhLjSMNNMJorc9dWEY5tEnD_iJwr2DKdG7DsZNzZKDKWMwOqBNDPOfLr0lr1vbI7x73o_I74vzX2ffV1c_v12efblauZILtaoFrCur1sAb0II1VaGk5K6ua6krVWsnaqHAVmvlOHOtbJsSBFdNwXWjdFsUR-Rk2zvFcDsDJjN4dNDn0SEPZoRSWles4jKjH16g12GOY_6dEZrJzJWcZep0S7kYECO0Zop-sHExnJmNKrORYTZizJOq_OL9c-9cD9Ds-H9uMiC3wJ3vYflfnzn_cbktfgQCk5-A</recordid><startdate>202208</startdate><enddate>202208</enddate><creator>Blakney, Andrew J. C.</creator><creator>Bainard, Luke D.</creator><creator>St‐Arnaud, Marc</creator><creator>Hijri, Mohamed</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7QL</scope><scope>7ST</scope><scope>7T7</scope><scope>7TN</scope><scope>7U9</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>H97</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6112-8372</orcidid><orcidid>https://orcid.org/0000-0001-7145-9642</orcidid><orcidid>https://orcid.org/0000-0002-6679-6190</orcidid><orcidid>https://orcid.org/0000-0002-7181-9895</orcidid></search><sort><creationdate>202208</creationdate><title>Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought</title><author>Blakney, Andrew J. C. ; Bainard, Luke D. ; St‐Arnaud, Marc ; Hijri, Mohamed</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4126-b2e89a68e1de720d936551cbbb5796b7c2b26ea986c10cf5fd4e216d317d67f33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bacteria</topic><topic>Biodiversity</topic><topic>Brassica</topic><topic>Brassicaceae</topic><topic>Butterflies & moths</topic><topic>Community structure</topic><topic>Drought</topic><topic>Feedback</topic><topic>Host plants</topic><topic>Hosts</topic><topic>Microbiomes</topic><topic>Microorganisms</topic><topic>Moisture effects</topic><topic>Phylogeny</topic><topic>Plants</topic><topic>Rhizosphere</topic><topic>rRNA 16S</topic><topic>Soil</topic><topic>Soil microorganisms</topic><topic>Soil moisture</topic><topic>Soil structure</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Blakney, Andrew J. C.</creatorcontrib><creatorcontrib>Bainard, Luke D.</creatorcontrib><creatorcontrib>St‐Arnaud, Marc</creatorcontrib><creatorcontrib>Hijri, Mohamed</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Oceanic Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Environmental microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Blakney, Andrew J. C.</au><au>Bainard, Luke D.</au><au>St‐Arnaud, Marc</au><au>Hijri, Mohamed</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought</atitle><jtitle>Environmental microbiology</jtitle><addtitle>Environ Microbiol</addtitle><date>2022-08</date><risdate>2022</risdate><volume>24</volume><issue>8</issue><spage>3529</spage><epage>3548</epage><pages>3529-3548</pages><issn>1462-2912</issn><eissn>1462-2920</eissn><abstract>Summary
Soil history operates through time to influence the structure and biodiversity of soil bacterial communities. Examining how different soil histories endure will help clarify the rules of bacterial community assembly. In this study, we established three different soil histories in field trials; the following year these plots were planted with five different Brassicaceae species. We hypothesized that the previously established soil histories would continue to structure the subsequent Brassicaceae bacterial root and rhizosphere communities. We used a MiSeq 16S rRNA metabarcoding strategy to determine the impact of different soil histories on the structure and biodiversity of the bacterial root and rhizosphere communities from the five different Brassicaceae host plants. We found that the Brassicaceae hosts were consistently significant factors in structuring the bacterial communities. Four host plants (Sinapis alba, Brassica napus, B. juncea, B. carinata) formed similar bacterial communities, regardless of different soil histories. Camelina sativa host plants structured phylogenetically distinct bacterial communities compared to the other hosts, particularly in their roots. Soil history established the previous year was only a significant factor for bacterial community structure when the feedback of the Brassicaceae host plants was weakened, potentially due to limited soil moisture during a dry year. Understanding how soil history is involved in the structure and biodiversity of bacterial communities through time is a limitation in microbial ecology and is required for employing microbiome technologies in improving agricultural systems.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><pmid>35590462</pmid><doi>10.1111/1462-2920.16046</doi><tpages>20</tpages><orcidid>https://orcid.org/0000-0001-6112-8372</orcidid><orcidid>https://orcid.org/0000-0001-7145-9642</orcidid><orcidid>https://orcid.org/0000-0002-6679-6190</orcidid><orcidid>https://orcid.org/0000-0002-7181-9895</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Bacteria Biodiversity Brassica Brassicaceae Butterflies & moths Community structure Drought Feedback Host plants Hosts Microbiomes Microorganisms Moisture effects Phylogeny Plants Rhizosphere rRNA 16S Soil Soil microorganisms Soil moisture Soil structure |
title | Brassicaceae host plants mask the feedback from the previous year's soil history on bacterial communities, except when they experience drought |
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