N6-Methyladenosine dynamic changes and differential methylation in wheat grain development
Main conclusion More methylation changes occur in late interval than in early interval of wheat seed development with protein and the starch synthesis-related pathway enriched in the later stages. Wheat seed development is a critical process to determining wheat yield and quality, which is controlle...
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| Veröffentlicht in: | Planta 2022-06, Vol.255 (6), p.125-125, Article 125 |
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| creator | Li, Wenxiang Yu, Yi Chen, Xuanrong Fang, Qian Yang, Anqi Chen, Xinyu Wu, Lei Wang, Chengyu Wu, Dechuan Ye, Sihong Wu, Dexiang Sun, Genlou |
| description | Main conclusion
More methylation changes occur in late interval than in early interval of wheat seed development with protein and the starch synthesis-related pathway enriched in the later stages.
Wheat seed development is a critical process to determining wheat yield and quality, which is controlled by genetics, epigenetics and environments. The N6-methyladenosine (m
6
A) modification is a reversible and dynamic process and plays regulatory role in plant development and stress responses. To better understand the role of m
6
A in wheat grain development, we characterized the m
6
A modification at 10 day post-anthesis (DPA), 20 DPA and 30 DPA in wheat grain development. m
6
A-seq identified 30,615, 30,326, 27,676 high confidence m
6
A peaks from the 10DPA, 20DPA, and 30DPA, respectively, and enriched at 3'UTR. There were 29,964, 29,542 and 26,834 unique peaks identified in AN0942_10d, AN0942_20d and AN0942_30d. One hundred and forty-two genes were methylated by m
6
A throughout seed development, 940 genes methylated in early grain development (AN0942_20d vs AN0942_10d), 1542 genes in late grain development (AN0942_30d vs AN0942_20d), and 1190 genes between early and late development stage (AN0942_30d vs AN0942_10d). KEGG enrichment analysis found that protein-related pathways and the starch synthesis-related pathway were significantly enriched in the later stages of seed development. Our results provide novel knowledge on m
6
A dynamic changes and its roles in wheat grain development. |
| doi_str_mv | 10.1007/s00425-022-03893-4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2664791144</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2664208044</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-d71f5fb11a5d3bde5de1410ad9af926ee2491e98f699d1ac41af52af2c4db9353</originalsourceid><addsrcrecordid>eNp9kLlOxDAURS0EgmH5AQoUiYYm8LwlcYkQm8TSQENjeeJnJihxBjsDmr_HTFgkCio_6Z17bR9C9ikcU4DyJAIIJnNgLAdeKZ6LNTKhgrOcgajWyQQgzaC43CLbMb4ApGVZbpItLmVRFryakKe7Ir_FYbZsjUXfx8ZjZpfedE2d1TPjnzFmxtvMNs5hQD80ps26MTA0vc8an73P0AzZczBptviGbT_vErlLNpxpI-59nTvk8eL84ewqv7m_vD47vclrXsohtyV10k0pNdLyqUVpkQoKxirjFCsQmVAUVeUKpSw1taDGSWYcq4Wdpr_xHXI09s5D_7rAOOiuiTW2rfHYL6JmRSFKRakQCT38g770i-DT61YUgwpWFBupOvQxBnR6HprOhKWmoD_N69G8Tub1yrz-DB18VS-mHdqfyLfqBPARiGmVvIbfu_-p_QATfo9M</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2664208044</pqid></control><display><type>article</type><title>N6-Methyladenosine dynamic changes and differential methylation in wheat grain development</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>Li, Wenxiang ; Yu, Yi ; Chen, Xuanrong ; Fang, Qian ; Yang, Anqi ; Chen, Xinyu ; Wu, Lei ; Wang, Chengyu ; Wu, Dechuan ; Ye, Sihong ; Wu, Dexiang ; Sun, Genlou</creator><creatorcontrib>Li, Wenxiang ; Yu, Yi ; Chen, Xuanrong ; Fang, Qian ; Yang, Anqi ; Chen, Xinyu ; Wu, Lei ; Wang, Chengyu ; Wu, Dechuan ; Ye, Sihong ; Wu, Dexiang ; Sun, Genlou</creatorcontrib><description>Main conclusion
More methylation changes occur in late interval than in early interval of wheat seed development with protein and the starch synthesis-related pathway enriched in the later stages.
Wheat seed development is a critical process to determining wheat yield and quality, which is controlled by genetics, epigenetics and environments. The N6-methyladenosine (m
6
A) modification is a reversible and dynamic process and plays regulatory role in plant development and stress responses. To better understand the role of m
6
A in wheat grain development, we characterized the m
6
A modification at 10 day post-anthesis (DPA), 20 DPA and 30 DPA in wheat grain development. m
6
A-seq identified 30,615, 30,326, 27,676 high confidence m
6
A peaks from the 10DPA, 20DPA, and 30DPA, respectively, and enriched at 3'UTR. There were 29,964, 29,542 and 26,834 unique peaks identified in AN0942_10d, AN0942_20d and AN0942_30d. One hundred and forty-two genes were methylated by m
6
A throughout seed development, 940 genes methylated in early grain development (AN0942_20d vs AN0942_10d), 1542 genes in late grain development (AN0942_30d vs AN0942_20d), and 1190 genes between early and late development stage (AN0942_30d vs AN0942_10d). KEGG enrichment analysis found that protein-related pathways and the starch synthesis-related pathway were significantly enriched in the later stages of seed development. Our results provide novel knowledge on m
6
A dynamic changes and its roles in wheat grain development.</description><identifier>ISSN: 0032-0935</identifier><identifier>EISSN: 1432-2048</identifier><identifier>DOI: 10.1007/s00425-022-03893-4</identifier><identifier>PMID: 35567638</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>3' Untranslated regions ; Adenosine - analogs & derivatives ; Agriculture ; Biomedical and Life Sciences ; Crop yield ; Developmental stages ; DNA methylation ; DNA repair ; Ecology ; Edible Grain ; Enrichment ; Epigenetics ; Forestry ; Gene expression ; Genes ; Genetics ; Genomes ; Grain size ; Life Sciences ; Metabolism ; Methylation ; N6-methyladenosine ; Original Article ; Plant Sciences ; Protein biosynthesis ; Proteins ; Seeds ; Starch ; Starch - metabolism ; Synthesis ; Triticum ; Wheat</subject><ispartof>Planta, 2022-06, Vol.255 (6), p.125-125, Article 125</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-d71f5fb11a5d3bde5de1410ad9af926ee2491e98f699d1ac41af52af2c4db9353</citedby><cites>FETCH-LOGICAL-c375t-d71f5fb11a5d3bde5de1410ad9af926ee2491e98f699d1ac41af52af2c4db9353</cites><orcidid>0000-0001-9144-6072</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00425-022-03893-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00425-022-03893-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35567638$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Wenxiang</creatorcontrib><creatorcontrib>Yu, Yi</creatorcontrib><creatorcontrib>Chen, Xuanrong</creatorcontrib><creatorcontrib>Fang, Qian</creatorcontrib><creatorcontrib>Yang, Anqi</creatorcontrib><creatorcontrib>Chen, Xinyu</creatorcontrib><creatorcontrib>Wu, Lei</creatorcontrib><creatorcontrib>Wang, Chengyu</creatorcontrib><creatorcontrib>Wu, Dechuan</creatorcontrib><creatorcontrib>Ye, Sihong</creatorcontrib><creatorcontrib>Wu, Dexiang</creatorcontrib><creatorcontrib>Sun, Genlou</creatorcontrib><title>N6-Methyladenosine dynamic changes and differential methylation in wheat grain development</title><title>Planta</title><addtitle>Planta</addtitle><addtitle>Planta</addtitle><description>Main conclusion
More methylation changes occur in late interval than in early interval of wheat seed development with protein and the starch synthesis-related pathway enriched in the later stages.
Wheat seed development is a critical process to determining wheat yield and quality, which is controlled by genetics, epigenetics and environments. The N6-methyladenosine (m
6
A) modification is a reversible and dynamic process and plays regulatory role in plant development and stress responses. To better understand the role of m
6
A in wheat grain development, we characterized the m
6
A modification at 10 day post-anthesis (DPA), 20 DPA and 30 DPA in wheat grain development. m
6
A-seq identified 30,615, 30,326, 27,676 high confidence m
6
A peaks from the 10DPA, 20DPA, and 30DPA, respectively, and enriched at 3'UTR. There were 29,964, 29,542 and 26,834 unique peaks identified in AN0942_10d, AN0942_20d and AN0942_30d. One hundred and forty-two genes were methylated by m
6
A throughout seed development, 940 genes methylated in early grain development (AN0942_20d vs AN0942_10d), 1542 genes in late grain development (AN0942_30d vs AN0942_20d), and 1190 genes between early and late development stage (AN0942_30d vs AN0942_10d). KEGG enrichment analysis found that protein-related pathways and the starch synthesis-related pathway were significantly enriched in the later stages of seed development. Our results provide novel knowledge on m
6
A dynamic changes and its roles in wheat grain development.</description><subject>3' Untranslated regions</subject><subject>Adenosine - analogs & derivatives</subject><subject>Agriculture</subject><subject>Biomedical and Life Sciences</subject><subject>Crop yield</subject><subject>Developmental stages</subject><subject>DNA methylation</subject><subject>DNA repair</subject><subject>Ecology</subject><subject>Edible Grain</subject><subject>Enrichment</subject><subject>Epigenetics</subject><subject>Forestry</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetics</subject><subject>Genomes</subject><subject>Grain size</subject><subject>Life Sciences</subject><subject>Metabolism</subject><subject>Methylation</subject><subject>N6-methyladenosine</subject><subject>Original Article</subject><subject>Plant Sciences</subject><subject>Protein biosynthesis</subject><subject>Proteins</subject><subject>Seeds</subject><subject>Starch</subject><subject>Starch - metabolism</subject><subject>Synthesis</subject><subject>Triticum</subject><subject>Wheat</subject><issn>0032-0935</issn><issn>1432-2048</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kLlOxDAURS0EgmH5AQoUiYYm8LwlcYkQm8TSQENjeeJnJihxBjsDmr_HTFgkCio_6Z17bR9C9ikcU4DyJAIIJnNgLAdeKZ6LNTKhgrOcgajWyQQgzaC43CLbMb4ApGVZbpItLmVRFryakKe7Ir_FYbZsjUXfx8ZjZpfedE2d1TPjnzFmxtvMNs5hQD80ps26MTA0vc8an73P0AzZczBptviGbT_vErlLNpxpI-59nTvk8eL84ewqv7m_vD47vclrXsohtyV10k0pNdLyqUVpkQoKxirjFCsQmVAUVeUKpSw1taDGSWYcq4Wdpr_xHXI09s5D_7rAOOiuiTW2rfHYL6JmRSFKRakQCT38g770i-DT61YUgwpWFBupOvQxBnR6HprOhKWmoD_N69G8Tub1yrz-DB18VS-mHdqfyLfqBPARiGmVvIbfu_-p_QATfo9M</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>Li, Wenxiang</creator><creator>Yu, Yi</creator><creator>Chen, Xuanrong</creator><creator>Fang, Qian</creator><creator>Yang, Anqi</creator><creator>Chen, Xinyu</creator><creator>Wu, Lei</creator><creator>Wang, Chengyu</creator><creator>Wu, Dechuan</creator><creator>Ye, Sihong</creator><creator>Wu, Dexiang</creator><creator>Sun, Genlou</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7QR</scope><scope>7TM</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9144-6072</orcidid></search><sort><creationdate>20220601</creationdate><title>N6-Methyladenosine dynamic changes and differential methylation in wheat grain development</title><author>Li, Wenxiang ; Yu, Yi ; Chen, Xuanrong ; Fang, Qian ; Yang, Anqi ; Chen, Xinyu ; Wu, Lei ; Wang, Chengyu ; Wu, Dechuan ; Ye, Sihong ; Wu, Dexiang ; Sun, Genlou</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-d71f5fb11a5d3bde5de1410ad9af926ee2491e98f699d1ac41af52af2c4db9353</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>3' Untranslated regions</topic><topic>Adenosine - analogs & derivatives</topic><topic>Agriculture</topic><topic>Biomedical and Life Sciences</topic><topic>Crop yield</topic><topic>Developmental stages</topic><topic>DNA methylation</topic><topic>DNA repair</topic><topic>Ecology</topic><topic>Edible Grain</topic><topic>Enrichment</topic><topic>Epigenetics</topic><topic>Forestry</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genetics</topic><topic>Genomes</topic><topic>Grain size</topic><topic>Life Sciences</topic><topic>Metabolism</topic><topic>Methylation</topic><topic>N6-methyladenosine</topic><topic>Original Article</topic><topic>Plant Sciences</topic><topic>Protein biosynthesis</topic><topic>Proteins</topic><topic>Seeds</topic><topic>Starch</topic><topic>Starch - metabolism</topic><topic>Synthesis</topic><topic>Triticum</topic><topic>Wheat</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Wenxiang</creatorcontrib><creatorcontrib>Yu, Yi</creatorcontrib><creatorcontrib>Chen, Xuanrong</creatorcontrib><creatorcontrib>Fang, Qian</creatorcontrib><creatorcontrib>Yang, Anqi</creatorcontrib><creatorcontrib>Chen, Xinyu</creatorcontrib><creatorcontrib>Wu, Lei</creatorcontrib><creatorcontrib>Wang, Chengyu</creatorcontrib><creatorcontrib>Wu, Dechuan</creatorcontrib><creatorcontrib>Ye, Sihong</creatorcontrib><creatorcontrib>Wu, Dexiang</creatorcontrib><creatorcontrib>Sun, Genlou</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Planta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Wenxiang</au><au>Yu, Yi</au><au>Chen, Xuanrong</au><au>Fang, Qian</au><au>Yang, Anqi</au><au>Chen, Xinyu</au><au>Wu, Lei</au><au>Wang, Chengyu</au><au>Wu, Dechuan</au><au>Ye, Sihong</au><au>Wu, Dexiang</au><au>Sun, Genlou</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>N6-Methyladenosine dynamic changes and differential methylation in wheat grain development</atitle><jtitle>Planta</jtitle><stitle>Planta</stitle><addtitle>Planta</addtitle><date>2022-06-01</date><risdate>2022</risdate><volume>255</volume><issue>6</issue><spage>125</spage><epage>125</epage><pages>125-125</pages><artnum>125</artnum><issn>0032-0935</issn><eissn>1432-2048</eissn><abstract>Main conclusion
More methylation changes occur in late interval than in early interval of wheat seed development with protein and the starch synthesis-related pathway enriched in the later stages.
Wheat seed development is a critical process to determining wheat yield and quality, which is controlled by genetics, epigenetics and environments. The N6-methyladenosine (m
6
A) modification is a reversible and dynamic process and plays regulatory role in plant development and stress responses. To better understand the role of m
6
A in wheat grain development, we characterized the m
6
A modification at 10 day post-anthesis (DPA), 20 DPA and 30 DPA in wheat grain development. m
6
A-seq identified 30,615, 30,326, 27,676 high confidence m
6
A peaks from the 10DPA, 20DPA, and 30DPA, respectively, and enriched at 3'UTR. There were 29,964, 29,542 and 26,834 unique peaks identified in AN0942_10d, AN0942_20d and AN0942_30d. One hundred and forty-two genes were methylated by m
6
A throughout seed development, 940 genes methylated in early grain development (AN0942_20d vs AN0942_10d), 1542 genes in late grain development (AN0942_30d vs AN0942_20d), and 1190 genes between early and late development stage (AN0942_30d vs AN0942_10d). KEGG enrichment analysis found that protein-related pathways and the starch synthesis-related pathway were significantly enriched in the later stages of seed development. Our results provide novel knowledge on m
6
A dynamic changes and its roles in wheat grain development.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>35567638</pmid><doi>10.1007/s00425-022-03893-4</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-9144-6072</orcidid></addata></record> |
| fulltext | fulltext |
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| ispartof | Planta, 2022-06, Vol.255 (6), p.125-125, Article 125 |
| issn | 0032-0935 1432-2048 |
| language | eng |
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| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | 3' Untranslated regions Adenosine - analogs & derivatives Agriculture Biomedical and Life Sciences Crop yield Developmental stages DNA methylation DNA repair Ecology Edible Grain Enrichment Epigenetics Forestry Gene expression Genes Genetics Genomes Grain size Life Sciences Metabolism Methylation N6-methyladenosine Original Article Plant Sciences Protein biosynthesis Proteins Seeds Starch Starch - metabolism Synthesis Triticum Wheat |
| title | N6-Methyladenosine dynamic changes and differential methylation in wheat grain development |
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