Genetic diversity of Ichthyophthirius multifiliis (Fouquet, 1876) infecting farmed rainbow trout (Oncorhynchus mykiss Walbaum, 1792) in Turkey
We assessed genetic diversities among Ichthyophthirius multifiliis (Ich) field isolates collected from farmed rainbow trout (Oncorhynchus mykiss) in Turkey. The overall prevalence of Ich was 35.3% (634/1798). Five novel Ich genotypes (ImulTR1 and ImulTR3‒ImulTR6) were described based on mitochondria...
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| Veröffentlicht in: | Journal of fish diseases 2022-08, Vol.45 (8), p.1109-1115 |
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| creator | Pekmezci, Gokmen Zafer Yildirim, Alparslan Duzlu, Onder Simsek, Emrah Balta, Fikri Yardimci, Banu Onuk, Ertan Emek Onder, Zuhal Ciloglu, Arif Yetismis, Gamze Yilmaz, Erdal Inci, Abdullah |
| description | We assessed genetic diversities among Ichthyophthirius multifiliis (Ich) field isolates collected from farmed rainbow trout (Oncorhynchus mykiss) in Turkey. The overall prevalence of Ich was 35.3% (634/1798). Five novel Ich genotypes (ImulTR1 and ImulTR3‒ImulTR6) were described based on mitochondrial cox‐1 and nad1_b genes. The remaining genotype ImulTR2 was identical to the previously reported NY3 (or Ark9 and TW7) genotype from the United States and South Asia. Phylogenetic analysis indicated Turkish Ich isolates separated genetically into at least four distinct groups. Our study presents the first data on the genotypes of Ich in Turkey. We also provide evidence for the wide distribution of the NY3 genotype (or Ark9 and TW7) from the United States and South Asia to Turkey. Genetic diversities within the mitochondrial genes provided adequate resolution for describing novel genotypes and identifying the known genotype within Turkish Ich isolates. Description of the Ich genotypes allows for tracking of pathogen genotypes worldwide. Thus, we can better understand the connections between Ich outbreaks in the fisheries aquaculture. |
| doi_str_mv | 10.1111/jfd.13633 |
| format | Article |
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The overall prevalence of Ich was 35.3% (634/1798). Five novel Ich genotypes (ImulTR1 and ImulTR3‒ImulTR6) were described based on mitochondrial cox‐1 and nad1_b genes. The remaining genotype ImulTR2 was identical to the previously reported NY3 (or Ark9 and TW7) genotype from the United States and South Asia. Phylogenetic analysis indicated Turkish Ich isolates separated genetically into at least four distinct groups. Our study presents the first data on the genotypes of Ich in Turkey. We also provide evidence for the wide distribution of the NY3 genotype (or Ark9 and TW7) from the United States and South Asia to Turkey. Genetic diversities within the mitochondrial genes provided adequate resolution for describing novel genotypes and identifying the known genotype within Turkish Ich isolates. Description of the Ich genotypes allows for tracking of pathogen genotypes worldwide. Thus, we can better understand the connections between Ich outbreaks in the fisheries aquaculture.</description><identifier>ISSN: 0140-7775</identifier><identifier>EISSN: 1365-2761</identifier><identifier>DOI: 10.1111/jfd.13633</identifier><identifier>PMID: 35485289</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Aquaculture ; barcoding ; ciliophora ; Fish diseases ; Fisheries ; Freshwater fishes ; Genes ; Genetic diversity ; Genetic variation ; Genotype & phenotype ; Genotypes ; Ichthyophthirius multifiliis ; Mitochondria ; mitochondrial DNA ; novel genotypes ; Oncorhynchus mykiss ; Pathogens ; Phylogeny ; Salmon ; Tracking ; Trout</subject><ispartof>Journal of fish diseases, 2022-08, Vol.45 (8), p.1109-1115</ispartof><rights>2022 John Wiley & Sons Ltd.</rights><rights>Copyright © 2022 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3533-fc80586b1adcf87f95cdb4958340372ed67bbfc90028ac6f090bdc006e31cfb53</citedby><cites>FETCH-LOGICAL-c3533-fc80586b1adcf87f95cdb4958340372ed67bbfc90028ac6f090bdc006e31cfb53</cites><orcidid>0000-0002-0492-9840 ; 0000-0003-1614-0756 ; 0000-0002-1823-5823 ; 0000-0002-6143-3630 ; 0000-0001-5260-3450 ; 0000-0001-7232-554X ; 0000-0002-7791-1959 ; 0000-0003-2695-7102 ; 0000-0001-7643-046X ; 0000-0001-6348-3618</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjfd.13633$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjfd.13633$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35485289$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pekmezci, Gokmen Zafer</creatorcontrib><creatorcontrib>Yildirim, Alparslan</creatorcontrib><creatorcontrib>Duzlu, Onder</creatorcontrib><creatorcontrib>Simsek, Emrah</creatorcontrib><creatorcontrib>Balta, Fikri</creatorcontrib><creatorcontrib>Yardimci, Banu</creatorcontrib><creatorcontrib>Onuk, Ertan Emek</creatorcontrib><creatorcontrib>Onder, Zuhal</creatorcontrib><creatorcontrib>Ciloglu, Arif</creatorcontrib><creatorcontrib>Yetismis, Gamze</creatorcontrib><creatorcontrib>Yilmaz, Erdal</creatorcontrib><creatorcontrib>Inci, Abdullah</creatorcontrib><title>Genetic diversity of Ichthyophthirius multifiliis (Fouquet, 1876) infecting farmed rainbow trout (Oncorhynchus mykiss Walbaum, 1792) in Turkey</title><title>Journal of fish diseases</title><addtitle>J Fish Dis</addtitle><description>We assessed genetic diversities among Ichthyophthirius multifiliis (Ich) field isolates collected from farmed rainbow trout (Oncorhynchus mykiss) in Turkey. The overall prevalence of Ich was 35.3% (634/1798). Five novel Ich genotypes (ImulTR1 and ImulTR3‒ImulTR6) were described based on mitochondrial cox‐1 and nad1_b genes. The remaining genotype ImulTR2 was identical to the previously reported NY3 (or Ark9 and TW7) genotype from the United States and South Asia. Phylogenetic analysis indicated Turkish Ich isolates separated genetically into at least four distinct groups. Our study presents the first data on the genotypes of Ich in Turkey. We also provide evidence for the wide distribution of the NY3 genotype (or Ark9 and TW7) from the United States and South Asia to Turkey. Genetic diversities within the mitochondrial genes provided adequate resolution for describing novel genotypes and identifying the known genotype within Turkish Ich isolates. Description of the Ich genotypes allows for tracking of pathogen genotypes worldwide. Thus, we can better understand the connections between Ich outbreaks in the fisheries aquaculture.</description><subject>Aquaculture</subject><subject>barcoding</subject><subject>ciliophora</subject><subject>Fish diseases</subject><subject>Fisheries</subject><subject>Freshwater fishes</subject><subject>Genes</subject><subject>Genetic diversity</subject><subject>Genetic variation</subject><subject>Genotype & phenotype</subject><subject>Genotypes</subject><subject>Ichthyophthirius multifiliis</subject><subject>Mitochondria</subject><subject>mitochondrial DNA</subject><subject>novel genotypes</subject><subject>Oncorhynchus mykiss</subject><subject>Pathogens</subject><subject>Phylogeny</subject><subject>Salmon</subject><subject>Tracking</subject><subject>Trout</subject><issn>0140-7775</issn><issn>1365-2761</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp1kctuFDEQRS0EIkNgwQ8gS2wmEp340X70EgUmBEXKJohly3bbjCfd7cEPov4JvhkPE1ggUYuqzdFRVV0AXmN0jmtd7Nxwjimn9AlY1ckaIjh-ClYIt6gRQrAT8CKlHUJYMMyfgxPKWsmI7Fbg55WdbfYGDv6HjcnnBQYHr802b5ewr91HXxKcypi986P3Ca43oXwvNr-DWAp-Bv3srMl-_gadipMdYFR-1uEB5hhKhuvb2YS4XWazPYiWe58S_KpGrcpUFaIjBwW8K_HeLi_BM6fGZF89zlPwZfPx7vJTc3N7dX35_qYxlFHaOCMRk1xjNRgnheuYGXTbMUlbRAWxAxdaO9MhRKQy3KEO6cEgxC3FxmlGT8H66N3HUG9JuZ98MnYc1WxDST3hTBJKO0Iq-vYfdBdKnOt2lZKS0pZwXqmzI2ViSCla1--jn1Rceoz6Q0h9Dan_HVJl3zwai67_-kv-SaUCF0fgwY92-b-p_7z5cFT-AqqKm8Y</recordid><startdate>202208</startdate><enddate>202208</enddate><creator>Pekmezci, Gokmen Zafer</creator><creator>Yildirim, Alparslan</creator><creator>Duzlu, Onder</creator><creator>Simsek, Emrah</creator><creator>Balta, Fikri</creator><creator>Yardimci, Banu</creator><creator>Onuk, Ertan Emek</creator><creator>Onder, Zuhal</creator><creator>Ciloglu, Arif</creator><creator>Yetismis, Gamze</creator><creator>Yilmaz, Erdal</creator><creator>Inci, Abdullah</creator><general>Blackwell Publishing Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7TN</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0492-9840</orcidid><orcidid>https://orcid.org/0000-0003-1614-0756</orcidid><orcidid>https://orcid.org/0000-0002-1823-5823</orcidid><orcidid>https://orcid.org/0000-0002-6143-3630</orcidid><orcidid>https://orcid.org/0000-0001-5260-3450</orcidid><orcidid>https://orcid.org/0000-0001-7232-554X</orcidid><orcidid>https://orcid.org/0000-0002-7791-1959</orcidid><orcidid>https://orcid.org/0000-0003-2695-7102</orcidid><orcidid>https://orcid.org/0000-0001-7643-046X</orcidid><orcidid>https://orcid.org/0000-0001-6348-3618</orcidid></search><sort><creationdate>202208</creationdate><title>Genetic diversity of Ichthyophthirius multifiliis (Fouquet, 1876) infecting farmed rainbow trout (Oncorhynchus mykiss Walbaum, 1792) in Turkey</title><author>Pekmezci, Gokmen Zafer ; Yildirim, Alparslan ; Duzlu, Onder ; Simsek, Emrah ; Balta, Fikri ; Yardimci, Banu ; Onuk, Ertan Emek ; Onder, Zuhal ; Ciloglu, Arif ; Yetismis, Gamze ; Yilmaz, Erdal ; Inci, Abdullah</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3533-fc80586b1adcf87f95cdb4958340372ed67bbfc90028ac6f090bdc006e31cfb53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Aquaculture</topic><topic>barcoding</topic><topic>ciliophora</topic><topic>Fish diseases</topic><topic>Fisheries</topic><topic>Freshwater fishes</topic><topic>Genes</topic><topic>Genetic diversity</topic><topic>Genetic variation</topic><topic>Genotype & phenotype</topic><topic>Genotypes</topic><topic>Ichthyophthirius multifiliis</topic><topic>Mitochondria</topic><topic>mitochondrial DNA</topic><topic>novel genotypes</topic><topic>Oncorhynchus mykiss</topic><topic>Pathogens</topic><topic>Phylogeny</topic><topic>Salmon</topic><topic>Tracking</topic><topic>Trout</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pekmezci, Gokmen Zafer</creatorcontrib><creatorcontrib>Yildirim, Alparslan</creatorcontrib><creatorcontrib>Duzlu, Onder</creatorcontrib><creatorcontrib>Simsek, Emrah</creatorcontrib><creatorcontrib>Balta, Fikri</creatorcontrib><creatorcontrib>Yardimci, Banu</creatorcontrib><creatorcontrib>Onuk, Ertan Emek</creatorcontrib><creatorcontrib>Onder, Zuhal</creatorcontrib><creatorcontrib>Ciloglu, Arif</creatorcontrib><creatorcontrib>Yetismis, Gamze</creatorcontrib><creatorcontrib>Yilmaz, Erdal</creatorcontrib><creatorcontrib>Inci, Abdullah</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Oceanic Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of fish diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pekmezci, Gokmen Zafer</au><au>Yildirim, Alparslan</au><au>Duzlu, Onder</au><au>Simsek, Emrah</au><au>Balta, Fikri</au><au>Yardimci, Banu</au><au>Onuk, Ertan Emek</au><au>Onder, Zuhal</au><au>Ciloglu, Arif</au><au>Yetismis, Gamze</au><au>Yilmaz, Erdal</au><au>Inci, Abdullah</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Ichthyophthirius multifiliis (Fouquet, 1876) infecting farmed rainbow trout (Oncorhynchus mykiss Walbaum, 1792) in Turkey</atitle><jtitle>Journal of fish diseases</jtitle><addtitle>J Fish Dis</addtitle><date>2022-08</date><risdate>2022</risdate><volume>45</volume><issue>8</issue><spage>1109</spage><epage>1115</epage><pages>1109-1115</pages><issn>0140-7775</issn><eissn>1365-2761</eissn><abstract>We assessed genetic diversities among Ichthyophthirius multifiliis (Ich) field isolates collected from farmed rainbow trout (Oncorhynchus mykiss) in Turkey. The overall prevalence of Ich was 35.3% (634/1798). Five novel Ich genotypes (ImulTR1 and ImulTR3‒ImulTR6) were described based on mitochondrial cox‐1 and nad1_b genes. The remaining genotype ImulTR2 was identical to the previously reported NY3 (or Ark9 and TW7) genotype from the United States and South Asia. Phylogenetic analysis indicated Turkish Ich isolates separated genetically into at least four distinct groups. Our study presents the first data on the genotypes of Ich in Turkey. We also provide evidence for the wide distribution of the NY3 genotype (or Ark9 and TW7) from the United States and South Asia to Turkey. Genetic diversities within the mitochondrial genes provided adequate resolution for describing novel genotypes and identifying the known genotype within Turkish Ich isolates. Description of the Ich genotypes allows for tracking of pathogen genotypes worldwide. Thus, we can better understand the connections between Ich outbreaks in the fisheries aquaculture.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>35485289</pmid><doi>10.1111/jfd.13633</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-0492-9840</orcidid><orcidid>https://orcid.org/0000-0003-1614-0756</orcidid><orcidid>https://orcid.org/0000-0002-1823-5823</orcidid><orcidid>https://orcid.org/0000-0002-6143-3630</orcidid><orcidid>https://orcid.org/0000-0001-5260-3450</orcidid><orcidid>https://orcid.org/0000-0001-7232-554X</orcidid><orcidid>https://orcid.org/0000-0002-7791-1959</orcidid><orcidid>https://orcid.org/0000-0003-2695-7102</orcidid><orcidid>https://orcid.org/0000-0001-7643-046X</orcidid><orcidid>https://orcid.org/0000-0001-6348-3618</orcidid></addata></record> |
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| subjects | Aquaculture barcoding ciliophora Fish diseases Fisheries Freshwater fishes Genes Genetic diversity Genetic variation Genotype & phenotype Genotypes Ichthyophthirius multifiliis Mitochondria mitochondrial DNA novel genotypes Oncorhynchus mykiss Pathogens Phylogeny Salmon Tracking Trout |
| title | Genetic diversity of Ichthyophthirius multifiliis (Fouquet, 1876) infecting farmed rainbow trout (Oncorhynchus mykiss Walbaum, 1792) in Turkey |
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