A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021

Despite their widespread distribution, only a single genotype variant of clade 2.3.4.4b H5N1 influenza viruses has been found so far in Europe. Here, we report the detection of a new highly pathogenic avian influenza H5N1 genotype in geese and ducks from a backyard farm in the Czech Republic. Phylog...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Archives of virology 2022-06, Vol.167 (6), p.1455-1459
Hauptverfasser: Nagy, Alexander, Černíková, Lenka, Stará, Martina
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1459
container_issue 6
container_start_page 1455
container_title Archives of virology
container_volume 167
creator Nagy, Alexander
Černíková, Lenka
Stará, Martina
description Despite their widespread distribution, only a single genotype variant of clade 2.3.4.4b H5N1 influenza viruses has been found so far in Europe. Here, we report the detection of a new highly pathogenic avian influenza H5N1 genotype in geese and ducks from a backyard farm in the Czech Republic. Phylogenetic analysis revealed that the Czech H5N1 virus retained the A/Eurasian_Wigeon/Netherlands/1/2020-like backbone with an altered PB2 segment obtained from co-circulating low-pathogenic avian influenza viruses.
doi_str_mv 10.1007/s00705-022-05442-6
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2655564013</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2667084787</sourcerecordid><originalsourceid>FETCH-LOGICAL-c419t-9ff02169df37a097f1d81f6a804643784f223b0718ccd5f280cd226dff04a1953</originalsourceid><addsrcrecordid>eNp9kElPwzAUhC0EgrL8AQ7IEhcuKc-7c0SITargAmfL9dKmSpMSJ6Dy6zGUReLAxbbmfTPPGoSOCYwJgDpP-QBRAKUFCM5pIbfQiHBGC61KvY1GwIAXWoLeQ_spLQCywMQu2mOCyxJKMULmAjfhFbva-oDpmI35mE_xrbgneF7N5vUar2w_b2ehqRy2L5VtcNXEegjNm8VZbfv1KmAf-uD64PMMXw1dm6X8okDJIdqJtk7h6Os-QE_XV4-Xt8Xk4ebu8mJSOE7KvihjzLAsfWTKQqki8ZpEaTVwyZnSPFLKpqCIds6LSDU4T6n02cYtKQU7QGeb3FXXPg8h9WZZJRfq2jahHZKhUgghORCW0dM_6KIduib_LlNSgeZKq0zRDeW6NqUuRLPqqqXt1oaA-ajfbOo3uX7zWb-R2XTyFT1Ml8H_WL77zgDbACmPmlnofnf_E_sOHY-LwA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2667084787</pqid></control><display><type>article</type><title>A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>Nagy, Alexander ; Černíková, Lenka ; Stará, Martina</creator><creatorcontrib>Nagy, Alexander ; Černíková, Lenka ; Stará, Martina</creatorcontrib><description>Despite their widespread distribution, only a single genotype variant of clade 2.3.4.4b H5N1 influenza viruses has been found so far in Europe. Here, we report the detection of a new highly pathogenic avian influenza H5N1 genotype in geese and ducks from a backyard farm in the Czech Republic. Phylogenetic analysis revealed that the Czech H5N1 virus retained the A/Eurasian_Wigeon/Netherlands/1/2020-like backbone with an altered PB2 segment obtained from co-circulating low-pathogenic avian influenza viruses.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-022-05442-6</identifier><identifier>PMID: 35469095</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Avian flu ; Biomedical and Life Sciences ; Biomedicine ; Brief Report ; Chickens ; Ducks ; Europe - epidemiology ; Genotype ; Genotype &amp; phenotype ; Genotypes ; Infectious Diseases ; Influenza A Virus, H5N1 Subtype - genetics ; Influenza in Birds - epidemiology ; Medical Microbiology ; Orthomyxoviridae ; Phylogeny ; Virology ; Viruses</subject><ispartof>Archives of virology, 2022-06, Vol.167 (6), p.1455-1459</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c419t-9ff02169df37a097f1d81f6a804643784f223b0718ccd5f280cd226dff04a1953</citedby><cites>FETCH-LOGICAL-c419t-9ff02169df37a097f1d81f6a804643784f223b0718ccd5f280cd226dff04a1953</cites><orcidid>0000-0002-0512-8746</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-022-05442-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-022-05442-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35469095$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nagy, Alexander</creatorcontrib><creatorcontrib>Černíková, Lenka</creatorcontrib><creatorcontrib>Stará, Martina</creatorcontrib><title>A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Despite their widespread distribution, only a single genotype variant of clade 2.3.4.4b H5N1 influenza viruses has been found so far in Europe. Here, we report the detection of a new highly pathogenic avian influenza H5N1 genotype in geese and ducks from a backyard farm in the Czech Republic. Phylogenetic analysis revealed that the Czech H5N1 virus retained the A/Eurasian_Wigeon/Netherlands/1/2020-like backbone with an altered PB2 segment obtained from co-circulating low-pathogenic avian influenza viruses.</description><subject>Animals</subject><subject>Avian flu</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>Chickens</subject><subject>Ducks</subject><subject>Europe - epidemiology</subject><subject>Genotype</subject><subject>Genotype &amp; phenotype</subject><subject>Genotypes</subject><subject>Infectious Diseases</subject><subject>Influenza A Virus, H5N1 Subtype - genetics</subject><subject>Influenza in Birds - epidemiology</subject><subject>Medical Microbiology</subject><subject>Orthomyxoviridae</subject><subject>Phylogeny</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kElPwzAUhC0EgrL8AQ7IEhcuKc-7c0SITargAmfL9dKmSpMSJ6Dy6zGUReLAxbbmfTPPGoSOCYwJgDpP-QBRAKUFCM5pIbfQiHBGC61KvY1GwIAXWoLeQ_spLQCywMQu2mOCyxJKMULmAjfhFbva-oDpmI35mE_xrbgneF7N5vUar2w_b2ehqRy2L5VtcNXEegjNm8VZbfv1KmAf-uD64PMMXw1dm6X8okDJIdqJtk7h6Os-QE_XV4-Xt8Xk4ebu8mJSOE7KvihjzLAsfWTKQqki8ZpEaTVwyZnSPFLKpqCIds6LSDU4T6n02cYtKQU7QGeb3FXXPg8h9WZZJRfq2jahHZKhUgghORCW0dM_6KIduib_LlNSgeZKq0zRDeW6NqUuRLPqqqXt1oaA-ajfbOo3uX7zWb-R2XTyFT1Ml8H_WL77zgDbACmPmlnofnf_E_sOHY-LwA</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>Nagy, Alexander</creator><creator>Černíková, Lenka</creator><creator>Stará, Martina</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0512-8746</orcidid></search><sort><creationdate>20220601</creationdate><title>A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021</title><author>Nagy, Alexander ; Černíková, Lenka ; Stará, Martina</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-9ff02169df37a097f1d81f6a804643784f223b0718ccd5f280cd226dff04a1953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Animals</topic><topic>Avian flu</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Report</topic><topic>Chickens</topic><topic>Ducks</topic><topic>Europe - epidemiology</topic><topic>Genotype</topic><topic>Genotype &amp; phenotype</topic><topic>Genotypes</topic><topic>Infectious Diseases</topic><topic>Influenza A Virus, H5N1 Subtype - genetics</topic><topic>Influenza in Birds - epidemiology</topic><topic>Medical Microbiology</topic><topic>Orthomyxoviridae</topic><topic>Phylogeny</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nagy, Alexander</creatorcontrib><creatorcontrib>Černíková, Lenka</creatorcontrib><creatorcontrib>Stará, Martina</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nagy, Alexander</au><au>Černíková, Lenka</au><au>Stará, Martina</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2022-06-01</date><risdate>2022</risdate><volume>167</volume><issue>6</issue><spage>1455</spage><epage>1459</epage><pages>1455-1459</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Despite their widespread distribution, only a single genotype variant of clade 2.3.4.4b H5N1 influenza viruses has been found so far in Europe. Here, we report the detection of a new highly pathogenic avian influenza H5N1 genotype in geese and ducks from a backyard farm in the Czech Republic. Phylogenetic analysis revealed that the Czech H5N1 virus retained the A/Eurasian_Wigeon/Netherlands/1/2020-like backbone with an altered PB2 segment obtained from co-circulating low-pathogenic avian influenza viruses.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>35469095</pmid><doi>10.1007/s00705-022-05442-6</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0002-0512-8746</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0304-8608
ispartof Archives of virology, 2022-06, Vol.167 (6), p.1455-1459
issn 0304-8608
1432-8798
language eng
recordid cdi_proquest_miscellaneous_2655564013
source MEDLINE; SpringerLink Journals - AutoHoldings
subjects Animals
Avian flu
Biomedical and Life Sciences
Biomedicine
Brief Report
Chickens
Ducks
Europe - epidemiology
Genotype
Genotype & phenotype
Genotypes
Infectious Diseases
Influenza A Virus, H5N1 Subtype - genetics
Influenza in Birds - epidemiology
Medical Microbiology
Orthomyxoviridae
Phylogeny
Virology
Viruses
title A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-25T21%3A03%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20new%20clade%202.3.4.4b%20H5N1%20highly%20pathogenic%20avian%20influenza%20genotype%20detected%20in%20Europe%20in%202021&rft.jtitle=Archives%20of%20virology&rft.au=Nagy,%20Alexander&rft.date=2022-06-01&rft.volume=167&rft.issue=6&rft.spage=1455&rft.epage=1459&rft.pages=1455-1459&rft.issn=0304-8608&rft.eissn=1432-8798&rft_id=info:doi/10.1007/s00705-022-05442-6&rft_dat=%3Cproquest_cross%3E2667084787%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2667084787&rft_id=info:pmid/35469095&rfr_iscdi=true