A Structured Cleaving Mesh for Bioheat Transfer Application
Goal: The thermoregulation mechanism is a complex system that executes vital processes in the human body. Various models have been proposed to simulate the thermoregulatory response of an adult human to environmental stimuli. However, these models generally rely on stylized phantoms that lack the an...
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description | Goal: The thermoregulation mechanism is a complex system that executes vital processes in the human body. Various models have been proposed to simulate the thermoregulatory response of an adult human to environmental stimuli. However, these models generally rely on stylized phantoms that lack the anatomical details of voxel phantoms used in radiation dosimetry and shielding research. The goal of this work is to introduce voxel phantoms to thermoregulation research by modeling the physical energy exchange between tissue and its surroundings, discuss a specific challenge associated with voxel phantoms, propose a method to address this challenge, and demonstrate its application. Method: One of the major challenges in using voxel phantoms is the stair-step effect on the surface of the voxelized domain. This effect causes over-estimation of surface area, accurate knowledge of which is critical for modeling heat exchanging systems. A methodology to generate a voxel domain from medical imaging data and reduce error in the surface area caused by the stair-step effect is presented. The methodology, based on a structured mesh and finite-volume method, is demonstrated with tumors generated from magnetic resonance imaging (MRI) scans of mice. Results: The methodology discussed in the paper shows a decrease in surface area over-estimation from 50% to 15% for a sphere and 47% to 17% for tumor models generated directly from MRI scans. Conclusion: This work provides a direct method to generate a smoother domain from medical imaging data and reducing surface area error in a voxelized domain. The technique presented is independent of domain material, including tissue type, and can be extended to any homogeneous or inhomogeneous domain. The increase in surface area accuracy obtained by smoothing the voxel domain results in more accurate temperature estimates in heat transfer simulation. |
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Various models have been proposed to simulate the thermoregulatory response of an adult human to environmental stimuli. However, these models generally rely on stylized phantoms that lack the anatomical details of voxel phantoms used in radiation dosimetry and shielding research. The goal of this work is to introduce voxel phantoms to thermoregulation research by modeling the physical energy exchange between tissue and its surroundings, discuss a specific challenge associated with voxel phantoms, propose a method to address this challenge, and demonstrate its application. Method: One of the major challenges in using voxel phantoms is the stair-step effect on the surface of the voxelized domain. This effect causes over-estimation of surface area, accurate knowledge of which is critical for modeling heat exchanging systems. A methodology to generate a voxel domain from medical imaging data and reduce error in the surface area caused by the stair-step effect is presented. The methodology, based on a structured mesh and finite-volume method, is demonstrated with tumors generated from magnetic resonance imaging (MRI) scans of mice. Results: The methodology discussed in the paper shows a decrease in surface area over-estimation from 50% to 15% for a sphere and 47% to 17% for tumor models generated directly from MRI scans. Conclusion: This work provides a direct method to generate a smoother domain from medical imaging data and reducing surface area error in a voxelized domain. The technique presented is independent of domain material, including tissue type, and can be extended to any homogeneous or inhomogeneous domain. The increase in surface area accuracy obtained by smoothing the voxel domain results in more accurate temperature estimates in heat transfer simulation.</description><identifier>ISSN: 2644-1276</identifier><identifier>EISSN: 2644-1276</identifier><identifier>DOI: 10.1109/OJEMB.2020.2994557</identifier><identifier>PMID: 35402948</identifier><identifier>CODEN: IOJEA7</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Biomedical engineering ; Cartesian grid method ; Complex systems ; Domains ; Dosimeters ; Dosimetry ; Environmental effects ; Error reduction ; Finite element method ; Finite volume method ; Finite volume methods ; Heat exchange ; Heat transfer ; human thermal modeling ; Image processing ; image-based modeling ; Magnetic resonance imaging ; Magnetic shielding ; Medical imaging ; Methodology ; Modelling ; Radiation ; Radiation dosimetry ; Radiation shielding ; Surface area ; Thermal analysis ; Thermoregulation ; Tumors ; volumetric mesh ; voxel-based mesh</subject><ispartof>IEEE open journal of engineering in medicine and biology, 2020-01, Vol.1, p.174-186</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. 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Various models have been proposed to simulate the thermoregulatory response of an adult human to environmental stimuli. However, these models generally rely on stylized phantoms that lack the anatomical details of voxel phantoms used in radiation dosimetry and shielding research. The goal of this work is to introduce voxel phantoms to thermoregulation research by modeling the physical energy exchange between tissue and its surroundings, discuss a specific challenge associated with voxel phantoms, propose a method to address this challenge, and demonstrate its application. Method: One of the major challenges in using voxel phantoms is the stair-step effect on the surface of the voxelized domain. This effect causes over-estimation of surface area, accurate knowledge of which is critical for modeling heat exchanging systems. A methodology to generate a voxel domain from medical imaging data and reduce error in the surface area caused by the stair-step effect is presented. The methodology, based on a structured mesh and finite-volume method, is demonstrated with tumors generated from magnetic resonance imaging (MRI) scans of mice. Results: The methodology discussed in the paper shows a decrease in surface area over-estimation from 50% to 15% for a sphere and 47% to 17% for tumor models generated directly from MRI scans. Conclusion: This work provides a direct method to generate a smoother domain from medical imaging data and reducing surface area error in a voxelized domain. The technique presented is independent of domain material, including tissue type, and can be extended to any homogeneous or inhomogeneous domain. The increase in surface area accuracy obtained by smoothing the voxel domain results in more accurate temperature estimates in heat transfer simulation.</description><subject>Biomedical engineering</subject><subject>Cartesian grid method</subject><subject>Complex systems</subject><subject>Domains</subject><subject>Dosimeters</subject><subject>Dosimetry</subject><subject>Environmental effects</subject><subject>Error reduction</subject><subject>Finite element method</subject><subject>Finite volume method</subject><subject>Finite volume methods</subject><subject>Heat exchange</subject><subject>Heat transfer</subject><subject>human thermal modeling</subject><subject>Image processing</subject><subject>image-based modeling</subject><subject>Magnetic resonance imaging</subject><subject>Magnetic shielding</subject><subject>Medical imaging</subject><subject>Methodology</subject><subject>Modelling</subject><subject>Radiation</subject><subject>Radiation dosimetry</subject><subject>Radiation shielding</subject><subject>Surface area</subject><subject>Thermal analysis</subject><subject>Thermoregulation</subject><subject>Tumors</subject><subject>volumetric mesh</subject><subject>voxel-based mesh</subject><issn>2644-1276</issn><issn>2644-1276</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ESBDL</sourceid><sourceid>RIE</sourceid><sourceid>DOA</sourceid><recordid>eNpdkV9rFDEUxYMottR-AQUZ8MWXXfN_EgRhu1SttPTB-hySzM1ultnJmswU_Pam3XVpfUq495yT3PtD6C3Bc0Kw_nT74_LmYk4xxXOqNReifYFOqeR8RmgrXz65n6DzUjYYYyoIIVS9RidMcEw1V6fo86L5OebJj1OGrln2YO_jsGpuoKybkHJzEdMa7NjcZTuUALlZ7HZ99HaMaXiDXgXbFzg_nGfo19fLu-X32fXtt6vl4nrmBZHjLCjdtto6Qr3qJNXeSUEd9cKD1CyIwFrXdl4p7WiwwEQQQrJarS7PtGVn6Gqf2yW7Mbsctzb_MclG81hIeWVsHqPvwbSCdhwIw1hLbolVjnCCMQglOgfE1awv-6zd5LbQeRjGbPtnoc87Q1ybVbo3dQguJa8BHw8BOf2eoIxmG4uHvrcDpKmYunZNBdZaV-mH_6SbNOWhrspQwWilyDirKrpX-ZxKyRCOnyHYPKA2j6jNA2pzQF1N75-OcbT8A1sF7_aCCADHtq5PaqzYX93cq4E</recordid><startdate>20200101</startdate><enddate>20200101</enddate><creator>Amare, Rohan</creator><creator>Bahadori, Amir A.</creator><creator>Eckels, Steven</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</general><scope>97E</scope><scope>ESBDL</scope><scope>RIA</scope><scope>RIE</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-4589-105X</orcidid><orcidid>https://orcid.org/0000-0002-1989-1515</orcidid><orcidid>https://orcid.org/0000-0003-3398-1688</orcidid></search><sort><creationdate>20200101</creationdate><title>A Structured Cleaving Mesh for Bioheat Transfer Application</title><author>Amare, Rohan ; Bahadori, Amir A. ; Eckels, Steven</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c516t-f89779ab12c8d629cb652b2c5ce693f5f37b7dc889b2fae35f5563f37779c39a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biomedical engineering</topic><topic>Cartesian grid method</topic><topic>Complex systems</topic><topic>Domains</topic><topic>Dosimeters</topic><topic>Dosimetry</topic><topic>Environmental effects</topic><topic>Error reduction</topic><topic>Finite element method</topic><topic>Finite volume method</topic><topic>Finite volume methods</topic><topic>Heat exchange</topic><topic>Heat transfer</topic><topic>human thermal modeling</topic><topic>Image processing</topic><topic>image-based modeling</topic><topic>Magnetic resonance imaging</topic><topic>Magnetic shielding</topic><topic>Medical imaging</topic><topic>Methodology</topic><topic>Modelling</topic><topic>Radiation</topic><topic>Radiation dosimetry</topic><topic>Radiation shielding</topic><topic>Surface area</topic><topic>Thermal analysis</topic><topic>Thermoregulation</topic><topic>Tumors</topic><topic>volumetric mesh</topic><topic>voxel-based mesh</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amare, Rohan</creatorcontrib><creatorcontrib>Bahadori, Amir A.</creatorcontrib><creatorcontrib>Eckels, Steven</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE Open Access Journals</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Electronic Library (IEL)</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>IEEE open journal of engineering in medicine and biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amare, Rohan</au><au>Bahadori, Amir A.</au><au>Eckels, Steven</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Structured Cleaving Mesh for Bioheat Transfer Application</atitle><jtitle>IEEE open journal of engineering in medicine and biology</jtitle><stitle>OJEMB</stitle><addtitle>IEEE Open J Eng Med Biol</addtitle><date>2020-01-01</date><risdate>2020</risdate><volume>1</volume><spage>174</spage><epage>186</epage><pages>174-186</pages><issn>2644-1276</issn><eissn>2644-1276</eissn><coden>IOJEA7</coden><abstract>Goal: The thermoregulation mechanism is a complex system that executes vital processes in the human body. Various models have been proposed to simulate the thermoregulatory response of an adult human to environmental stimuli. However, these models generally rely on stylized phantoms that lack the anatomical details of voxel phantoms used in radiation dosimetry and shielding research. The goal of this work is to introduce voxel phantoms to thermoregulation research by modeling the physical energy exchange between tissue and its surroundings, discuss a specific challenge associated with voxel phantoms, propose a method to address this challenge, and demonstrate its application. Method: One of the major challenges in using voxel phantoms is the stair-step effect on the surface of the voxelized domain. This effect causes over-estimation of surface area, accurate knowledge of which is critical for modeling heat exchanging systems. A methodology to generate a voxel domain from medical imaging data and reduce error in the surface area caused by the stair-step effect is presented. The methodology, based on a structured mesh and finite-volume method, is demonstrated with tumors generated from magnetic resonance imaging (MRI) scans of mice. Results: The methodology discussed in the paper shows a decrease in surface area over-estimation from 50% to 15% for a sphere and 47% to 17% for tumor models generated directly from MRI scans. Conclusion: This work provides a direct method to generate a smoother domain from medical imaging data and reducing surface area error in a voxelized domain. The technique presented is independent of domain material, including tissue type, and can be extended to any homogeneous or inhomogeneous domain. The increase in surface area accuracy obtained by smoothing the voxel domain results in more accurate temperature estimates in heat transfer simulation.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>35402948</pmid><doi>10.1109/OJEMB.2020.2994557</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-4589-105X</orcidid><orcidid>https://orcid.org/0000-0002-1989-1515</orcidid><orcidid>https://orcid.org/0000-0003-3398-1688</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biomedical engineering Cartesian grid method Complex systems Domains Dosimeters Dosimetry Environmental effects Error reduction Finite element method Finite volume method Finite volume methods Heat exchange Heat transfer human thermal modeling Image processing image-based modeling Magnetic resonance imaging Magnetic shielding Medical imaging Methodology Modelling Radiation Radiation dosimetry Radiation shielding Surface area Thermal analysis Thermoregulation Tumors volumetric mesh voxel-based mesh |
title | A Structured Cleaving Mesh for Bioheat Transfer Application |
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