Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa
Strain UY79 was isolated from a root nodule of , collected at the Esteros de Farrapos National Park, Río Negro, Uruguay. Cells were non-motile Gram-variable rods with central to subterminal oval to ellipsoidal endospores that swell the sporangia. Growth was observed in the range of 15-42 °C (optimum...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2022-03, Vol.72 (3) |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Roldán, Diego M Costa, Andrés Králová, Stanislava Busse, Hans-Jürgen Amarelle, Vanesa Fabiano, Elena Menes, Rodolfo Javier |
| description | Strain UY79
was isolated from a root nodule of
, collected at the Esteros de Farrapos National Park, Río Negro, Uruguay. Cells were non-motile Gram-variable rods with central to subterminal oval to ellipsoidal endospores that swell the sporangia. Growth was observed in the range of 15-42 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and with up to 3 % (w/v) NaCl (optimum, 1-2 %). Strain UY79
was facultative anaerobic, catalase-positive and oxidase-negative. According to the results of 16S rRNA gene sequence analysis, UY79
belongs to the genus
and is closely related to
MS2379
,
BD-57
,
ATCC 842
and
PB172
, exhibiting 99.4, 99.0, 99.0 and 98.9% sequence identity, respectively. Average nucleotide identity and digital DNA-DNA hybridization values with the most closely related type strains were 74.3-88.6% and 38.2-48.7 %, respectively. Major fatty acids (>10 %) were anteiso-C
, iso-C
and C
. Menaquinones MK-7 and MK-6 were the only isoprenoid quinones detected. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified glycolipid. Spermidine was the predominant polyamine. The DNA G+C content based on the draft genome sequence was 46.34 mol%. Based on the current polyphasic study, UY79
represents a novel species of the genus
, for which the name
sp. nov. is proposed. The type strain is UY79
(=CCM 9147
=CGMCC 1.19038
). |
| doi_str_mv | 10.1099/ijsem.0.005294 |
| format | Article |
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was isolated from a root nodule of
, collected at the Esteros de Farrapos National Park, Río Negro, Uruguay. Cells were non-motile Gram-variable rods with central to subterminal oval to ellipsoidal endospores that swell the sporangia. Growth was observed in the range of 15-42 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and with up to 3 % (w/v) NaCl (optimum, 1-2 %). Strain UY79
was facultative anaerobic, catalase-positive and oxidase-negative. According to the results of 16S rRNA gene sequence analysis, UY79
belongs to the genus
and is closely related to
MS2379
,
BD-57
,
ATCC 842
and
PB172
, exhibiting 99.4, 99.0, 99.0 and 98.9% sequence identity, respectively. Average nucleotide identity and digital DNA-DNA hybridization values with the most closely related type strains were 74.3-88.6% and 38.2-48.7 %, respectively. Major fatty acids (>10 %) were anteiso-C
, iso-C
and C
. Menaquinones MK-7 and MK-6 were the only isoprenoid quinones detected. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified glycolipid. Spermidine was the predominant polyamine. The DNA G+C content based on the draft genome sequence was 46.34 mol%. Based on the current polyphasic study, UY79
represents a novel species of the genus
, for which the name
sp. nov. is proposed. The type strain is UY79
(=CCM 9147
=CGMCC 1.19038
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005294</identifier><identifier>PMID: 35324421</identifier><language>eng</language><publisher>England</publisher><subject>Arachis ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Paenibacillus ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA</subject><ispartof>International journal of systematic and evolutionary microbiology, 2022-03, Vol.72 (3)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c225t-e130ac857f5cc5fb1f70c23c2b1d2d900d7d5f062b1b0c6f6df85ba7915fc7e83</citedby><cites>FETCH-LOGICAL-c225t-e130ac857f5cc5fb1f70c23c2b1d2d900d7d5f062b1b0c6f6df85ba7915fc7e83</cites><orcidid>0000-0003-2868-6393 ; 0000-0003-0405-3321 ; 0000-0001-6084-0878 ; 0000-0001-8968-6149 ; 0000-0003-3384-5328</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35324421$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Roldán, Diego M</creatorcontrib><creatorcontrib>Costa, Andrés</creatorcontrib><creatorcontrib>Králová, Stanislava</creatorcontrib><creatorcontrib>Busse, Hans-Jürgen</creatorcontrib><creatorcontrib>Amarelle, Vanesa</creatorcontrib><creatorcontrib>Fabiano, Elena</creatorcontrib><creatorcontrib>Menes, Rodolfo Javier</creatorcontrib><title>Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Strain UY79
was isolated from a root nodule of
, collected at the Esteros de Farrapos National Park, Río Negro, Uruguay. Cells were non-motile Gram-variable rods with central to subterminal oval to ellipsoidal endospores that swell the sporangia. Growth was observed in the range of 15-42 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and with up to 3 % (w/v) NaCl (optimum, 1-2 %). Strain UY79
was facultative anaerobic, catalase-positive and oxidase-negative. According to the results of 16S rRNA gene sequence analysis, UY79
belongs to the genus
and is closely related to
MS2379
,
BD-57
,
ATCC 842
and
PB172
, exhibiting 99.4, 99.0, 99.0 and 98.9% sequence identity, respectively. Average nucleotide identity and digital DNA-DNA hybridization values with the most closely related type strains were 74.3-88.6% and 38.2-48.7 %, respectively. Major fatty acids (>10 %) were anteiso-C
, iso-C
and C
. Menaquinones MK-7 and MK-6 were the only isoprenoid quinones detected. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified glycolipid. Spermidine was the predominant polyamine. The DNA G+C content based on the draft genome sequence was 46.34 mol%. Based on the current polyphasic study, UY79
represents a novel species of the genus
, for which the name
sp. nov. is proposed. The type strain is UY79
(=CCM 9147
=CGMCC 1.19038
).</description><subject>Arachis</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Paenibacillus</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kL1PwzAQxS0EolBYGZFHBhLOTuw0Y1XxJVWCocyW49giVRIHX1KJ_x5DS6e7e_feG36E3DBIGZTlQ7NF26WQAghe5ifkguVSJgKy_PS4czkjl4hbgCgAnJNZJjKe55xdkM27tn1TadO07YTU6RD04NH22CDFIaW936X3tEHf6tHW1AXfUU2D92N81VNrqXd0GbT5jIFdbPGor8iZ0y3a68Ock4-nx83qJVm_Pb-uluvEcC7GxLIMtFmIwgljhKuYK8DwzPCK1bwuAeqiFg5kvCsw0snaLUSli5IJZwq7yObkbt87BP81WRxV16Cxbat76ydUXOY5REpcRmu6t5rgEYN1aghNp8O3YqB-Sao_kgrUnmQM3B66p6qz9dH-jy77AXuIcEY</recordid><startdate>202203</startdate><enddate>202203</enddate><creator>Roldán, Diego M</creator><creator>Costa, Andrés</creator><creator>Králová, Stanislava</creator><creator>Busse, Hans-Jürgen</creator><creator>Amarelle, Vanesa</creator><creator>Fabiano, Elena</creator><creator>Menes, Rodolfo Javier</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-2868-6393</orcidid><orcidid>https://orcid.org/0000-0003-0405-3321</orcidid><orcidid>https://orcid.org/0000-0001-6084-0878</orcidid><orcidid>https://orcid.org/0000-0001-8968-6149</orcidid><orcidid>https://orcid.org/0000-0003-3384-5328</orcidid></search><sort><creationdate>202203</creationdate><title>Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa</title><author>Roldán, Diego M ; Costa, Andrés ; Králová, Stanislava ; Busse, Hans-Jürgen ; Amarelle, Vanesa ; Fabiano, Elena ; Menes, Rodolfo Javier</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c225t-e130ac857f5cc5fb1f70c23c2b1d2d900d7d5f062b1b0c6f6df85ba7915fc7e83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Arachis</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Paenibacillus</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Roldán, Diego M</creatorcontrib><creatorcontrib>Costa, Andrés</creatorcontrib><creatorcontrib>Králová, Stanislava</creatorcontrib><creatorcontrib>Busse, Hans-Jürgen</creatorcontrib><creatorcontrib>Amarelle, Vanesa</creatorcontrib><creatorcontrib>Fabiano, Elena</creatorcontrib><creatorcontrib>Menes, Rodolfo Javier</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Roldán, Diego M</au><au>Costa, Andrés</au><au>Králová, Stanislava</au><au>Busse, Hans-Jürgen</au><au>Amarelle, Vanesa</au><au>Fabiano, Elena</au><au>Menes, Rodolfo Javier</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2022-03</date><risdate>2022</risdate><volume>72</volume><issue>3</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Strain UY79
was isolated from a root nodule of
, collected at the Esteros de Farrapos National Park, Río Negro, Uruguay. Cells were non-motile Gram-variable rods with central to subterminal oval to ellipsoidal endospores that swell the sporangia. Growth was observed in the range of 15-42 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and with up to 3 % (w/v) NaCl (optimum, 1-2 %). Strain UY79
was facultative anaerobic, catalase-positive and oxidase-negative. According to the results of 16S rRNA gene sequence analysis, UY79
belongs to the genus
and is closely related to
MS2379
,
BD-57
,
ATCC 842
and
PB172
, exhibiting 99.4, 99.0, 99.0 and 98.9% sequence identity, respectively. Average nucleotide identity and digital DNA-DNA hybridization values with the most closely related type strains were 74.3-88.6% and 38.2-48.7 %, respectively. Major fatty acids (>10 %) were anteiso-C
, iso-C
and C
. Menaquinones MK-7 and MK-6 were the only isoprenoid quinones detected. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified glycolipid. Spermidine was the predominant polyamine. The DNA G+C content based on the draft genome sequence was 46.34 mol%. Based on the current polyphasic study, UY79
represents a novel species of the genus
, for which the name
sp. nov. is proposed. The type strain is UY79
(=CCM 9147
=CGMCC 1.19038
).</abstract><cop>England</cop><pmid>35324421</pmid><doi>10.1099/ijsem.0.005294</doi><orcidid>https://orcid.org/0000-0003-2868-6393</orcidid><orcidid>https://orcid.org/0000-0003-0405-3321</orcidid><orcidid>https://orcid.org/0000-0001-6084-0878</orcidid><orcidid>https://orcid.org/0000-0001-8968-6149</orcidid><orcidid>https://orcid.org/0000-0003-3384-5328</orcidid></addata></record> |
| fulltext | fulltext |
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| ispartof | International journal of systematic and evolutionary microbiology, 2022-03, Vol.72 (3) |
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| language | eng |
| recordid | cdi_proquest_miscellaneous_2644009926 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Arachis Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Paenibacillus Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA |
| title | Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa |
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