Microbial associations for bioremediation. What does “microbial consortia” mean?
Microbial associations arise as useful tools in several biotechnological processes. Among them, bioremediation of contaminated environments usually takes advantage of these microbial associations. Despite being frequently used, these associations are indicated using a variety of expressions, showing...
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Veröffentlicht in: | Applied microbiology and biotechnology 2022-04, Vol.106 (7), p.2283-2297 |
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creator | Massot, Francisco Bernard, Nathalie Alvarez, Lucas M. Martinez Martorell, María M. Mac Cormack, Walter P. Ruberto, Lucas A. M. |
description | Microbial associations arise as useful tools in several biotechnological processes. Among them, bioremediation of contaminated environments usually takes advantage of these microbial associations. Despite being frequently used, these associations are indicated using a variety of expressions, showing a lack of consensus by specialists in the field. The main idea of this work is to analyze the variety of microbial associations referred to as “microbial consortia” (MC) in the context of pollutants biodegradation and bioremediation. To do that, we summarize the origin of the term pointing out the features that an MC is expected to meet, according to the opinion of several authors. An analysis of related bibliography was done seeking criteria to rationalize and classify MC in the context of bioremediation. We identify that the microbe’s origin and the level of human intervention are usually considered as a category to classify them as natural microbial consortia (NMC), artificial microbial consortia (AMC), and synthetic microbial consortia (SMC). In this sense, NMC are those associations composed by microorganisms obtained from a single source while AMC members come from different sources. SMC are a class of AMC in which microbial composition is defined to accomplish a certain specific task. We propose that the effective or potential existence of the interaction among MC members in the source material should be considered as a category in the classification as well, in combination with the origin of the source and level of intervention. Cross-kingdom MC and new developments were also considered. Finally, the existence of grey zones in the limits between each proposed microbial consortia category is addressed.
Key points
•
Microbial consortia for bioremediation can be obtained through different methods.
•
The use of the term “microbial consortia” is unclear in the specialized literature.
•
We propose a simplified classification for microbial consortia for bioremediation. |
doi_str_mv | 10.1007/s00253-022-11864-8 |
format | Article |
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Key points
•
Microbial consortia for bioremediation can be obtained through different methods.
•
The use of the term “microbial consortia” is unclear in the specialized literature.
•
We propose a simplified classification for microbial consortia for bioremediation.</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-022-11864-8</identifier><identifier>PMID: 35294589</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biodegradation ; Biodegradation, Environmental ; Biomedical and Life Sciences ; Bioremediation ; Biotechnology ; Classification ; Consortia ; Context ; Environmental aspects ; Environmental Pollutants ; Humans ; Life Sciences ; Methods ; Microbial colonies ; Microbial Consortia ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Mini-Review ; Pollutants</subject><ispartof>Applied microbiology and biotechnology, 2022-04, Vol.106 (7), p.2283-2297</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><rights>COPYRIGHT 2022 Springer</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c442t-71218885d3899adbb728cac3577f0dc086a8eab43816758dad9b2b9a6985ef0d3</citedby><cites>FETCH-LOGICAL-c442t-71218885d3899adbb728cac3577f0dc086a8eab43816758dad9b2b9a6985ef0d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-022-11864-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-022-11864-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27929,27930,41493,42562,51324</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35294589$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Massot, Francisco</creatorcontrib><creatorcontrib>Bernard, Nathalie</creatorcontrib><creatorcontrib>Alvarez, Lucas M. Martinez</creatorcontrib><creatorcontrib>Martorell, María M.</creatorcontrib><creatorcontrib>Mac Cormack, Walter P.</creatorcontrib><creatorcontrib>Ruberto, Lucas A. M.</creatorcontrib><title>Microbial associations for bioremediation. What does “microbial consortia” mean?</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>Microbial associations arise as useful tools in several biotechnological processes. Among them, bioremediation of contaminated environments usually takes advantage of these microbial associations. Despite being frequently used, these associations are indicated using a variety of expressions, showing a lack of consensus by specialists in the field. The main idea of this work is to analyze the variety of microbial associations referred to as “microbial consortia” (MC) in the context of pollutants biodegradation and bioremediation. To do that, we summarize the origin of the term pointing out the features that an MC is expected to meet, according to the opinion of several authors. An analysis of related bibliography was done seeking criteria to rationalize and classify MC in the context of bioremediation. We identify that the microbe’s origin and the level of human intervention are usually considered as a category to classify them as natural microbial consortia (NMC), artificial microbial consortia (AMC), and synthetic microbial consortia (SMC). In this sense, NMC are those associations composed by microorganisms obtained from a single source while AMC members come from different sources. SMC are a class of AMC in which microbial composition is defined to accomplish a certain specific task. We propose that the effective or potential existence of the interaction among MC members in the source material should be considered as a category in the classification as well, in combination with the origin of the source and level of intervention. Cross-kingdom MC and new developments were also considered. Finally, the existence of grey zones in the limits between each proposed microbial consortia category is addressed.
Key points
•
Microbial consortia for bioremediation can be obtained through different methods.
•
The use of the term “microbial consortia” is unclear in the specialized literature.
•
We propose a simplified classification for microbial consortia for bioremediation.</description><subject>Biodegradation</subject><subject>Biodegradation, Environmental</subject><subject>Biomedical and Life Sciences</subject><subject>Bioremediation</subject><subject>Biotechnology</subject><subject>Classification</subject><subject>Consortia</subject><subject>Context</subject><subject>Environmental aspects</subject><subject>Environmental Pollutants</subject><subject>Humans</subject><subject>Life Sciences</subject><subject>Methods</subject><subject>Microbial colonies</subject><subject>Microbial Consortia</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mini-Review</subject><subject>Pollutants</subject><issn>0175-7598</issn><issn>1432-0614</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc9qFTEUh4Mo9lp9ARcy4MbNXPM_JyspxapQcVNxGc5kMjVlZlKTuQt3fRD7cn0Sc53aoohkETj5foeT8xHynNEto9S8LpRyJVrKecsYaNnCA7JhUvCWaiYfkg1lRrVGWTggT0q5oJRx0PoxORCKW6nAbsjZx-hz6iKODZaSfMQlprk0Q8pNF1MOU-jX2rb58hWXpk-hNDdXP6a7nK98ykvEm6vrZgo4v3lKHg04lvDs9j4kn0_enh2_b08_vftwfHTaein50hrGGQCoXoC12Hed4eDRC2XMQHtPQSME7KQApo2CHnvb8c6itqBCJcQhebX2vczp2y6UxU2x-DCOOIe0K45rSQWXUsuKvvwLvUi7PNfp9pSx0jBg99Q5jsHFeUhLRr9v6o60tcCFBKjU9h9UPX2oW0lzGGKt_xHga6CurJQcBneZ44T5u2PU7VW6VaWrKt0vlW4fenE78a6rEu4iv91VQKxAqU_zecj3X_pP259fnqlA</recordid><startdate>20220401</startdate><enddate>20220401</enddate><creator>Massot, Francisco</creator><creator>Bernard, Nathalie</creator><creator>Alvarez, Lucas M. 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What does “microbial consortia” mean?</title><author>Massot, Francisco ; Bernard, Nathalie ; Alvarez, Lucas M. Martinez ; Martorell, María M. ; Mac Cormack, Walter P. ; Ruberto, Lucas A. 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Martinez</au><au>Martorell, María M.</au><au>Mac Cormack, Walter P.</au><au>Ruberto, Lucas A. M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Microbial associations for bioremediation. What does “microbial consortia” mean?</atitle><jtitle>Applied microbiology and biotechnology</jtitle><stitle>Appl Microbiol Biotechnol</stitle><addtitle>Appl Microbiol Biotechnol</addtitle><date>2022-04-01</date><risdate>2022</risdate><volume>106</volume><issue>7</issue><spage>2283</spage><epage>2297</epage><pages>2283-2297</pages><issn>0175-7598</issn><eissn>1432-0614</eissn><abstract>Microbial associations arise as useful tools in several biotechnological processes. Among them, bioremediation of contaminated environments usually takes advantage of these microbial associations. Despite being frequently used, these associations are indicated using a variety of expressions, showing a lack of consensus by specialists in the field. The main idea of this work is to analyze the variety of microbial associations referred to as “microbial consortia” (MC) in the context of pollutants biodegradation and bioremediation. To do that, we summarize the origin of the term pointing out the features that an MC is expected to meet, according to the opinion of several authors. An analysis of related bibliography was done seeking criteria to rationalize and classify MC in the context of bioremediation. We identify that the microbe’s origin and the level of human intervention are usually considered as a category to classify them as natural microbial consortia (NMC), artificial microbial consortia (AMC), and synthetic microbial consortia (SMC). In this sense, NMC are those associations composed by microorganisms obtained from a single source while AMC members come from different sources. SMC are a class of AMC in which microbial composition is defined to accomplish a certain specific task. We propose that the effective or potential existence of the interaction among MC members in the source material should be considered as a category in the classification as well, in combination with the origin of the source and level of intervention. Cross-kingdom MC and new developments were also considered. Finally, the existence of grey zones in the limits between each proposed microbial consortia category is addressed.
Key points
•
Microbial consortia for bioremediation can be obtained through different methods.
•
The use of the term “microbial consortia” is unclear in the specialized literature.
•
We propose a simplified classification for microbial consortia for bioremediation.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>35294589</pmid><doi>10.1007/s00253-022-11864-8</doi><tpages>15</tpages></addata></record> |
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subjects | Biodegradation Biodegradation, Environmental Biomedical and Life Sciences Bioremediation Biotechnology Classification Consortia Context Environmental aspects Environmental Pollutants Humans Life Sciences Methods Microbial colonies Microbial Consortia Microbial Genetics and Genomics Microbiology Microorganisms Mini-Review Pollutants |
title | Microbial associations for bioremediation. What does “microbial consortia” mean? |
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