Development and evaluation of India’s first intraspecific Gossypium barbadense cotton recombinant inbred mapping population for extra-long staple fibre traits
Fibre quality improvement in Gossypium hirsutum is one of the long thought objectives for sustainability of cotton improvement. The efforts to transfer G. barbadense alleles in to G. hirsutum for enhanced fibre quality is still under process across the world. To meet the future fibre quality demand...
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| Veröffentlicht in: | Journal of genetics 2022-06, Vol.101 (1), Article 4 |
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| creator | GOWDA, S. ANJAN KATAGERI, ISHWARAPPA S. KUMAR, N. V. MOHAN PATIL, RAJESH S. |
| description | Fibre quality improvement in
Gossypium hirsutum
is one of the long thought objectives for sustainability of cotton improvement. The efforts to transfer
G. barbadense
alleles in to
G. hirsutum
for enhanced fibre quality is still under process across the world. To meet the future fibre quality demand in India, here we report development of
G. barbadense
×
G. barbadense
recombinant inbred mapping population that has huge potential for precise mapping of extra-long staple traits. The two-location evaluation and variability analysis for extra-long staple traits such as fibre length (24.91 to 34.06 mm), fibre strength (25.02 to 35.86 g/tex), micronaire (2.89–4.57), uniformity index (64.08–98.83), fibre elongation (5.37–6.60) and maturity ratio (0.48–0.76) were highly satisfactory. The principal component analysis indicates that the principal component-1 explaining 23.12% variance had maximum values of Eigen vectors explained by fibre strength (–0.464), length (–0.469), elongation (–0.448), maturity ratio (0.312) and micronaire value (0.306) indicating the worth of the population for which it was developed. The correlation analysis indicated that the fibre length and strength could be simultaneously improved without any impact on seed cotton yield since both traits were positively associated with each other and also showed nonsignificant association with seed cotton yield. A total of 255 recombinant inbred lines (RILs) showed normal distribution from both Z-score of skewness/kurtosis analysis and quartile-quartile plots indicating that they can be readily utilized for genotyping with latest available technologies such as genotype-by-sequencing for effective mapping of extra-long staple traits in cotton. |
| doi_str_mv | 10.1007/s12041-021-01338-7 |
| format | Article |
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Gossypium hirsutum
is one of the long thought objectives for sustainability of cotton improvement. The efforts to transfer
G. barbadense
alleles in to
G. hirsutum
for enhanced fibre quality is still under process across the world. To meet the future fibre quality demand in India, here we report development of
G. barbadense
×
G. barbadense
recombinant inbred mapping population that has huge potential for precise mapping of extra-long staple traits. The two-location evaluation and variability analysis for extra-long staple traits such as fibre length (24.91 to 34.06 mm), fibre strength (25.02 to 35.86 g/tex), micronaire (2.89–4.57), uniformity index (64.08–98.83), fibre elongation (5.37–6.60) and maturity ratio (0.48–0.76) were highly satisfactory. The principal component analysis indicates that the principal component-1 explaining 23.12% variance had maximum values of Eigen vectors explained by fibre strength (–0.464), length (–0.469), elongation (–0.448), maturity ratio (0.312) and micronaire value (0.306) indicating the worth of the population for which it was developed. The correlation analysis indicated that the fibre length and strength could be simultaneously improved without any impact on seed cotton yield since both traits were positively associated with each other and also showed nonsignificant association with seed cotton yield. A total of 255 recombinant inbred lines (RILs) showed normal distribution from both Z-score of skewness/kurtosis analysis and quartile-quartile plots indicating that they can be readily utilized for genotyping with latest available technologies such as genotype-by-sequencing for effective mapping of extra-long staple traits in cotton.</description><identifier>ISSN: 0022-1333</identifier><identifier>EISSN: 0973-7731</identifier><identifier>DOI: 10.1007/s12041-021-01338-7</identifier><identifier>PMID: 35129137</identifier><language>eng</language><publisher>New Delhi: Springer India</publisher><subject>Analysis ; Animal Genetics and Genomics ; Biomedical and Life Sciences ; Correlation analysis ; Cotton ; Cotton Fiber ; Cotton industry ; Crop yields ; Elongation ; Evolutionary Biology ; Genotype ; Genotypes ; Genotyping ; Gossypium - genetics ; Gossypium barbadense ; Inbreeding ; Life Sciences ; Mapping ; Microbial Genetics and Genomics ; Phenotype ; Plant Genetics and Genomics ; Quality control ; Quantitative Trait Loci ; Research Article</subject><ispartof>Journal of genetics, 2022-06, Vol.101 (1), Article 4</ispartof><rights>Indian Academy of Sciences 2021</rights><rights>COPYRIGHT 2022 Springer</rights><rights>Indian Academy of Sciences 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c442t-28c51ef78b36bc9c480cf0470ce0594d6ddc576643bc73dec2d35b8bd1832c2e3</citedby><cites>FETCH-LOGICAL-c442t-28c51ef78b36bc9c480cf0470ce0594d6ddc576643bc73dec2d35b8bd1832c2e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12041-021-01338-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12041-021-01338-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35129137$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>GOWDA, S. ANJAN</creatorcontrib><creatorcontrib>KATAGERI, ISHWARAPPA S.</creatorcontrib><creatorcontrib>KUMAR, N. V. MOHAN</creatorcontrib><creatorcontrib>PATIL, RAJESH S.</creatorcontrib><title>Development and evaluation of India’s first intraspecific Gossypium barbadense cotton recombinant inbred mapping population for extra-long staple fibre traits</title><title>Journal of genetics</title><addtitle>J Genet</addtitle><addtitle>J Genet</addtitle><description>Fibre quality improvement in
Gossypium hirsutum
is one of the long thought objectives for sustainability of cotton improvement. The efforts to transfer
G. barbadense
alleles in to
G. hirsutum
for enhanced fibre quality is still under process across the world. To meet the future fibre quality demand in India, here we report development of
G. barbadense
×
G. barbadense
recombinant inbred mapping population that has huge potential for precise mapping of extra-long staple traits. The two-location evaluation and variability analysis for extra-long staple traits such as fibre length (24.91 to 34.06 mm), fibre strength (25.02 to 35.86 g/tex), micronaire (2.89–4.57), uniformity index (64.08–98.83), fibre elongation (5.37–6.60) and maturity ratio (0.48–0.76) were highly satisfactory. The principal component analysis indicates that the principal component-1 explaining 23.12% variance had maximum values of Eigen vectors explained by fibre strength (–0.464), length (–0.469), elongation (–0.448), maturity ratio (0.312) and micronaire value (0.306) indicating the worth of the population for which it was developed. The correlation analysis indicated that the fibre length and strength could be simultaneously improved without any impact on seed cotton yield since both traits were positively associated with each other and also showed nonsignificant association with seed cotton yield. A total of 255 recombinant inbred lines (RILs) showed normal distribution from both Z-score of skewness/kurtosis analysis and quartile-quartile plots indicating that they can be readily utilized for genotyping with latest available technologies such as genotype-by-sequencing for effective mapping of extra-long staple traits in cotton.</description><subject>Analysis</subject><subject>Animal Genetics and Genomics</subject><subject>Biomedical and Life Sciences</subject><subject>Correlation analysis</subject><subject>Cotton</subject><subject>Cotton Fiber</subject><subject>Cotton industry</subject><subject>Crop yields</subject><subject>Elongation</subject><subject>Evolutionary Biology</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Gossypium - genetics</subject><subject>Gossypium barbadense</subject><subject>Inbreeding</subject><subject>Life Sciences</subject><subject>Mapping</subject><subject>Microbial Genetics and Genomics</subject><subject>Phenotype</subject><subject>Plant Genetics and Genomics</subject><subject>Quality control</subject><subject>Quantitative Trait Loci</subject><subject>Research Article</subject><issn>0022-1333</issn><issn>0973-7731</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kstu1TAQhiMEohd4ARbIEhs2Kb4kcbKsCpRKldjA2vJlfOQqsYOdVHTX12DHs_EkzGkKFQghy_Jlvn9mbP1V9YLRE0apfFMYpw2rKcfJhOhr-ag6pIMUtZSCPcY95bzGiDiojkq52h8l5U-rA9EyPjAhD6vvb-EaxjRPEBeioyNwrcdVLyFFkjy5iC7oH7ffCvEhl4WEuGRdZrDBB0vOUyk3c1gnYnQ22kEsQGxaFhRnsGkyIeq4V5kMjkx6nkPckTnN67iV8CkT-Io56zFhpCx6HgFrIU_wNizlWfXE67HA8_v1uPr8_t2nsw_15cfzi7PTy9o2DV9q3tuWgZe9EZ2xg216aj1tJLVA26FxnXO2lV3XCGOlcGC5E63pjWO94JaDOK5eb3nnnL6sUBY1hWJhHHWEtBbFOxyCNnRA9NVf6FVac8TukGJYY2hp_0Dt9AgqRJ_wQXafVJ1KKmlPZS-ROvkHhcPBFGyK4APe_yHgm8Bm_P0MXs05TDrfKEbV3hZqs4VCW6g7W6i96OV9x6uZwP2W_PIBAmIDCobiDvLDk_6T9icYDMXi</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>GOWDA, S. ANJAN</creator><creator>KATAGERI, ISHWARAPPA S.</creator><creator>KUMAR, N. V. MOHAN</creator><creator>PATIL, RAJESH S.</creator><general>Springer India</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SS</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20220601</creationdate><title>Development and evaluation of India’s first intraspecific Gossypium barbadense cotton recombinant inbred mapping population for extra-long staple fibre traits</title><author>GOWDA, S. ANJAN ; KATAGERI, ISHWARAPPA S. ; KUMAR, N. V. MOHAN ; PATIL, RAJESH S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c442t-28c51ef78b36bc9c480cf0470ce0594d6ddc576643bc73dec2d35b8bd1832c2e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Analysis</topic><topic>Animal Genetics and Genomics</topic><topic>Biomedical and Life Sciences</topic><topic>Correlation analysis</topic><topic>Cotton</topic><topic>Cotton Fiber</topic><topic>Cotton industry</topic><topic>Crop yields</topic><topic>Elongation</topic><topic>Evolutionary Biology</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Gossypium - genetics</topic><topic>Gossypium barbadense</topic><topic>Inbreeding</topic><topic>Life Sciences</topic><topic>Mapping</topic><topic>Microbial Genetics and Genomics</topic><topic>Phenotype</topic><topic>Plant Genetics and Genomics</topic><topic>Quality control</topic><topic>Quantitative Trait Loci</topic><topic>Research Article</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>GOWDA, S. ANJAN</creatorcontrib><creatorcontrib>KATAGERI, ISHWARAPPA S.</creatorcontrib><creatorcontrib>KUMAR, N. V. MOHAN</creatorcontrib><creatorcontrib>PATIL, RAJESH S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>GOWDA, S. ANJAN</au><au>KATAGERI, ISHWARAPPA S.</au><au>KUMAR, N. V. MOHAN</au><au>PATIL, RAJESH S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development and evaluation of India’s first intraspecific Gossypium barbadense cotton recombinant inbred mapping population for extra-long staple fibre traits</atitle><jtitle>Journal of genetics</jtitle><stitle>J Genet</stitle><addtitle>J Genet</addtitle><date>2022-06-01</date><risdate>2022</risdate><volume>101</volume><issue>1</issue><artnum>4</artnum><issn>0022-1333</issn><eissn>0973-7731</eissn><abstract>Fibre quality improvement in
Gossypium hirsutum
is one of the long thought objectives for sustainability of cotton improvement. The efforts to transfer
G. barbadense
alleles in to
G. hirsutum
for enhanced fibre quality is still under process across the world. To meet the future fibre quality demand in India, here we report development of
G. barbadense
×
G. barbadense
recombinant inbred mapping population that has huge potential for precise mapping of extra-long staple traits. The two-location evaluation and variability analysis for extra-long staple traits such as fibre length (24.91 to 34.06 mm), fibre strength (25.02 to 35.86 g/tex), micronaire (2.89–4.57), uniformity index (64.08–98.83), fibre elongation (5.37–6.60) and maturity ratio (0.48–0.76) were highly satisfactory. The principal component analysis indicates that the principal component-1 explaining 23.12% variance had maximum values of Eigen vectors explained by fibre strength (–0.464), length (–0.469), elongation (–0.448), maturity ratio (0.312) and micronaire value (0.306) indicating the worth of the population for which it was developed. The correlation analysis indicated that the fibre length and strength could be simultaneously improved without any impact on seed cotton yield since both traits were positively associated with each other and also showed nonsignificant association with seed cotton yield. A total of 255 recombinant inbred lines (RILs) showed normal distribution from both Z-score of skewness/kurtosis analysis and quartile-quartile plots indicating that they can be readily utilized for genotyping with latest available technologies such as genotype-by-sequencing for effective mapping of extra-long staple traits in cotton.</abstract><cop>New Delhi</cop><pub>Springer India</pub><pmid>35129137</pmid><doi>10.1007/s12041-021-01338-7</doi></addata></record> |
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| ispartof | Journal of genetics, 2022-06, Vol.101 (1), Article 4 |
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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Indian Academy of Sciences; SpringerLink Journals - AutoHoldings |
| subjects | Analysis Animal Genetics and Genomics Biomedical and Life Sciences Correlation analysis Cotton Cotton Fiber Cotton industry Crop yields Elongation Evolutionary Biology Genotype Genotypes Genotyping Gossypium - genetics Gossypium barbadense Inbreeding Life Sciences Mapping Microbial Genetics and Genomics Phenotype Plant Genetics and Genomics Quality control Quantitative Trait Loci Research Article |
| title | Development and evaluation of India’s first intraspecific Gossypium barbadense cotton recombinant inbred mapping population for extra-long staple fibre traits |
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