Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment
The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperat...
Gespeichert in:
| Veröffentlicht in: | Extremophiles : life under extreme conditions 2022-04, Vol.26 (1), p.8-8, Article 8 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 8 |
|---|---|
| container_issue | 1 |
| container_start_page | 8 |
| container_title | Extremophiles : life under extreme conditions |
| container_volume | 26 |
| creator | Velázquez-Ríos, Irving Oswaldo Rincón-Rosales, Reiner Gutiérrez-Miceli, Federico Antonio Alcántara-Hernández, Rocio J. Ruíz-Valdiviezo, Víctor Manuel |
| description | The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperature gradient (pH 1.9–5.1, 38–89 °C). Further, we interpreted these results within a physicochemical context. The composition of the microbial assemblage differed significantly between the sediments and water. Sediment communities were different in the site with the highest temperature and lower pH value compared to the other ones sampled, while those in the water were relatively similar at all points. Most of the genera found were related to
Alicyclobacillus
,
Acinetobacter
,
Bacillus
,
Mesoaciditoga
,
Methanothermobacter
,
Desulfitobacterium, Therminicanus, Kyrpidia
,
Paenibacillus
,
Thermoanaerobacterium
, and
Gelria
. Some of these genera are known by their thermo-acidic tolerant capacities with flexible metabolisms to use diverse electron donor/acceptors (S or Fe), while others are thermo(acid)philes that mainly occur in the most extreme sites of the lake. These results show the presence of a microbial community adapted to the changing conditions of a very dynamic crater-lake, that include chemoorganotrophs and chemolithotrophs. |
| doi_str_mv | 10.1007/s00792-022-01257-0 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2622284614</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2622284614</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-e88674fb98be16888811846fbc1a5456394bacfb6bb050116a29374a3f54d7e23</originalsourceid><addsrcrecordid>eNp9kc1O3DAUha2qVYFpX6CLylI3bEz9n4RdNaKAhFQW7dpyHIcxJM5gJyPNjgdpn6KPwJvwJNyZoSB1gSX_SPc7x1f3IPSJ0SNGafE1w1FxQjlsxlVB6Bu0z6QQRFa0ert9M0K1YnvoIOdrSpmCwnu0JxRVVan0PlpdpuHGpvUwBoebsPIph3GNrUtDztji5Rm-SrYJPo44RDwuPH64-33S4fkiuMX93_hw9we7ZEefSGdv_DFooh2nZLtuvcFTPxDrQgP2Pq5CGmIPXh_Qu9Z22X98umfo1_eTn_MzcvHj9Hz-7YI4UaiR-LLUhWzrqqw90yUsxkqp29oxq6TSopK1dW2t65oqypi2vBKFtKJVsik8FzN0uPNdpuF28nk0fcjOd52Nfpiy4ZpzDo4wqRn68h96PUwpQncbikkOHRVA8R21HVDyrVmm0MMADaNmk4rZpWIgFbNNxVAQfX6ynureN8-SfzEAIHZAhlK88unl71dsHwFv0JoI</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2621423757</pqid></control><display><type>article</type><title>Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment</title><source>MEDLINE</source><source>SpringerLink Journals</source><creator>Velázquez-Ríos, Irving Oswaldo ; Rincón-Rosales, Reiner ; Gutiérrez-Miceli, Federico Antonio ; Alcántara-Hernández, Rocio J. ; Ruíz-Valdiviezo, Víctor Manuel</creator><creatorcontrib>Velázquez-Ríos, Irving Oswaldo ; Rincón-Rosales, Reiner ; Gutiérrez-Miceli, Federico Antonio ; Alcántara-Hernández, Rocio J. ; Ruíz-Valdiviezo, Víctor Manuel</creatorcontrib><description>The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperature gradient (pH 1.9–5.1, 38–89 °C). Further, we interpreted these results within a physicochemical context. The composition of the microbial assemblage differed significantly between the sediments and water. Sediment communities were different in the site with the highest temperature and lower pH value compared to the other ones sampled, while those in the water were relatively similar at all points. Most of the genera found were related to
Alicyclobacillus
,
Acinetobacter
,
Bacillus
,
Mesoaciditoga
,
Methanothermobacter
,
Desulfitobacterium, Therminicanus, Kyrpidia
,
Paenibacillus
,
Thermoanaerobacterium
, and
Gelria
. Some of these genera are known by their thermo-acidic tolerant capacities with flexible metabolisms to use diverse electron donor/acceptors (S or Fe), while others are thermo(acid)philes that mainly occur in the most extreme sites of the lake. These results show the presence of a microbial community adapted to the changing conditions of a very dynamic crater-lake, that include chemoorganotrophs and chemolithotrophs.</description><identifier>ISSN: 1431-0651</identifier><identifier>EISSN: 1433-4909</identifier><identifier>DOI: 10.1007/s00792-022-01257-0</identifier><identifier>PMID: 35059856</identifier><language>eng</language><publisher>Tokyo: Springer Japan</publisher><subject>Acidic lakes ; Bacteria ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Craters ; Geologic Sediments ; Lakes ; Life Sciences ; Microbial Ecology ; Microbiology ; Microorganisms ; Original Paper ; pH effects ; Phylogeny ; Proton-Motive Force ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Sediment ; Sediment samples ; Sediments ; Sulfur ; Temperature gradients ; Volcanoes</subject><ispartof>Extremophiles : life under extreme conditions, 2022-04, Vol.26 (1), p.8-8, Article 8</ispartof><rights>The Author(s), under exclusive licence to Springer Japan KK, part of Springer Nature 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer Japan KK, part of Springer Nature.</rights><rights>The Author(s), under exclusive licence to Springer Japan KK, part of Springer Nature 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-e88674fb98be16888811846fbc1a5456394bacfb6bb050116a29374a3f54d7e23</citedby><cites>FETCH-LOGICAL-c375t-e88674fb98be16888811846fbc1a5456394bacfb6bb050116a29374a3f54d7e23</cites><orcidid>0000-0002-6626-715X ; 0000-0003-0572-8845</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00792-022-01257-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00792-022-01257-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35059856$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Velázquez-Ríos, Irving Oswaldo</creatorcontrib><creatorcontrib>Rincón-Rosales, Reiner</creatorcontrib><creatorcontrib>Gutiérrez-Miceli, Federico Antonio</creatorcontrib><creatorcontrib>Alcántara-Hernández, Rocio J.</creatorcontrib><creatorcontrib>Ruíz-Valdiviezo, Víctor Manuel</creatorcontrib><title>Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment</title><title>Extremophiles : life under extreme conditions</title><addtitle>Extremophiles</addtitle><addtitle>Extremophiles</addtitle><description>The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperature gradient (pH 1.9–5.1, 38–89 °C). Further, we interpreted these results within a physicochemical context. The composition of the microbial assemblage differed significantly between the sediments and water. Sediment communities were different in the site with the highest temperature and lower pH value compared to the other ones sampled, while those in the water were relatively similar at all points. Most of the genera found were related to
Alicyclobacillus
,
Acinetobacter
,
Bacillus
,
Mesoaciditoga
,
Methanothermobacter
,
Desulfitobacterium, Therminicanus, Kyrpidia
,
Paenibacillus
,
Thermoanaerobacterium
, and
Gelria
. Some of these genera are known by their thermo-acidic tolerant capacities with flexible metabolisms to use diverse electron donor/acceptors (S or Fe), while others are thermo(acid)philes that mainly occur in the most extreme sites of the lake. These results show the presence of a microbial community adapted to the changing conditions of a very dynamic crater-lake, that include chemoorganotrophs and chemolithotrophs.</description><subject>Acidic lakes</subject><subject>Bacteria</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Craters</subject><subject>Geologic Sediments</subject><subject>Lakes</subject><subject>Life Sciences</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Original Paper</subject><subject>pH effects</subject><subject>Phylogeny</subject><subject>Proton-Motive Force</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Sediment</subject><subject>Sediment samples</subject><subject>Sediments</subject><subject>Sulfur</subject><subject>Temperature gradients</subject><subject>Volcanoes</subject><issn>1431-0651</issn><issn>1433-4909</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kc1O3DAUha2qVYFpX6CLylI3bEz9n4RdNaKAhFQW7dpyHIcxJM5gJyPNjgdpn6KPwJvwJNyZoSB1gSX_SPc7x1f3IPSJ0SNGafE1w1FxQjlsxlVB6Bu0z6QQRFa0ert9M0K1YnvoIOdrSpmCwnu0JxRVVan0PlpdpuHGpvUwBoebsPIph3GNrUtDztji5Rm-SrYJPo44RDwuPH64-33S4fkiuMX93_hw9we7ZEefSGdv_DFooh2nZLtuvcFTPxDrQgP2Pq5CGmIPXh_Qu9Z22X98umfo1_eTn_MzcvHj9Hz-7YI4UaiR-LLUhWzrqqw90yUsxkqp29oxq6TSopK1dW2t65oqypi2vBKFtKJVsik8FzN0uPNdpuF28nk0fcjOd52Nfpiy4ZpzDo4wqRn68h96PUwpQncbikkOHRVA8R21HVDyrVmm0MMADaNmk4rZpWIgFbNNxVAQfX6ynureN8-SfzEAIHZAhlK88unl71dsHwFv0JoI</recordid><startdate>20220401</startdate><enddate>20220401</enddate><creator>Velázquez-Ríos, Irving Oswaldo</creator><creator>Rincón-Rosales, Reiner</creator><creator>Gutiérrez-Miceli, Federico Antonio</creator><creator>Alcántara-Hernández, Rocio J.</creator><creator>Ruíz-Valdiviezo, Víctor Manuel</creator><general>Springer Japan</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6626-715X</orcidid><orcidid>https://orcid.org/0000-0003-0572-8845</orcidid></search><sort><creationdate>20220401</creationdate><title>Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment</title><author>Velázquez-Ríos, Irving Oswaldo ; Rincón-Rosales, Reiner ; Gutiérrez-Miceli, Federico Antonio ; Alcántara-Hernández, Rocio J. ; Ruíz-Valdiviezo, Víctor Manuel</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-e88674fb98be16888811846fbc1a5456394bacfb6bb050116a29374a3f54d7e23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Acidic lakes</topic><topic>Bacteria</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Craters</topic><topic>Geologic Sediments</topic><topic>Lakes</topic><topic>Life Sciences</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Original Paper</topic><topic>pH effects</topic><topic>Phylogeny</topic><topic>Proton-Motive Force</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Sediment</topic><topic>Sediment samples</topic><topic>Sediments</topic><topic>Sulfur</topic><topic>Temperature gradients</topic><topic>Volcanoes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Velázquez-Ríos, Irving Oswaldo</creatorcontrib><creatorcontrib>Rincón-Rosales, Reiner</creatorcontrib><creatorcontrib>Gutiérrez-Miceli, Federico Antonio</creatorcontrib><creatorcontrib>Alcántara-Hernández, Rocio J.</creatorcontrib><creatorcontrib>Ruíz-Valdiviezo, Víctor Manuel</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Extremophiles : life under extreme conditions</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Velázquez-Ríos, Irving Oswaldo</au><au>Rincón-Rosales, Reiner</au><au>Gutiérrez-Miceli, Federico Antonio</au><au>Alcántara-Hernández, Rocio J.</au><au>Ruíz-Valdiviezo, Víctor Manuel</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment</atitle><jtitle>Extremophiles : life under extreme conditions</jtitle><stitle>Extremophiles</stitle><addtitle>Extremophiles</addtitle><date>2022-04-01</date><risdate>2022</risdate><volume>26</volume><issue>1</issue><spage>8</spage><epage>8</epage><pages>8-8</pages><artnum>8</artnum><issn>1431-0651</issn><eissn>1433-4909</eissn><abstract>The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperature gradient (pH 1.9–5.1, 38–89 °C). Further, we interpreted these results within a physicochemical context. The composition of the microbial assemblage differed significantly between the sediments and water. Sediment communities were different in the site with the highest temperature and lower pH value compared to the other ones sampled, while those in the water were relatively similar at all points. Most of the genera found were related to
Alicyclobacillus
,
Acinetobacter
,
Bacillus
,
Mesoaciditoga
,
Methanothermobacter
,
Desulfitobacterium, Therminicanus, Kyrpidia
,
Paenibacillus
,
Thermoanaerobacterium
, and
Gelria
. Some of these genera are known by their thermo-acidic tolerant capacities with flexible metabolisms to use diverse electron donor/acceptors (S or Fe), while others are thermo(acid)philes that mainly occur in the most extreme sites of the lake. These results show the presence of a microbial community adapted to the changing conditions of a very dynamic crater-lake, that include chemoorganotrophs and chemolithotrophs.</abstract><cop>Tokyo</cop><pub>Springer Japan</pub><pmid>35059856</pmid><doi>10.1007/s00792-022-01257-0</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-6626-715X</orcidid><orcidid>https://orcid.org/0000-0003-0572-8845</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1431-0651 |
| ispartof | Extremophiles : life under extreme conditions, 2022-04, Vol.26 (1), p.8-8, Article 8 |
| issn | 1431-0651 1433-4909 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2622284614 |
| source | MEDLINE; SpringerLink Journals |
| subjects | Acidic lakes Bacteria Biochemistry Biomedical and Life Sciences Biotechnology Craters Geologic Sediments Lakes Life Sciences Microbial Ecology Microbiology Microorganisms Original Paper pH effects Phylogeny Proton-Motive Force RNA, Ribosomal, 16S - genetics rRNA 16S Sediment Sediment samples Sediments Sulfur Temperature gradients Volcanoes |
| title | Prokaryotic diversity across a pH gradient in the “El Chichón” crater-lake: a naturally thermo-acidic environment |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-10T05%3A26%3A11IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Prokaryotic%20diversity%20across%20a%20pH%20gradient%20in%20the%20%E2%80%9CEl%20Chich%C3%B3n%E2%80%9D%20crater-lake:%20a%20naturally%20thermo-acidic%20environment&rft.jtitle=Extremophiles%20:%20life%20under%20extreme%20conditions&rft.au=Vel%C3%A1zquez-R%C3%ADos,%20Irving%20Oswaldo&rft.date=2022-04-01&rft.volume=26&rft.issue=1&rft.spage=8&rft.epage=8&rft.pages=8-8&rft.artnum=8&rft.issn=1431-0651&rft.eissn=1433-4909&rft_id=info:doi/10.1007/s00792-022-01257-0&rft_dat=%3Cproquest_cross%3E2622284614%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2621423757&rft_id=info:pmid/35059856&rfr_iscdi=true |