Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates
The present study was undertaken to profile transcriptional changes in flag leaves between anthesis and end of grain filling stages of rainfed spring wheat cultivar under varying nitrogen (N) application rates: 0 kg/ha (NN), 52.5 kg/ha (LN), and 210 kg/ha (HN). A total of 4485 and 4627 differentiall...
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| Veröffentlicht in: | Genomics (San Diego, Calif.) Calif.), 2022-03, Vol.114 (2), p.110271-110271, Article 110271 |
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| creator | Effah, Zechariah Li, Lingling Xie, Junhong Karikari, Benjamin Liu, Chang Xu, Aixia Zeng, Min |
| description | The present study was undertaken to profile transcriptional changes in flag leaves between anthesis and end of grain filling stages of rainfed spring wheat cultivar under varying nitrogen (N) application rates: 0 kg/ha (NN), 52.5 kg/ha (LN), and 210 kg/ha (HN). A total of 4485 and 4627 differentially expressed genes (DEGs) were detected in LN and HN, respectively. The differential application of N altered several pathways; including plant hormone signal transduction, mitogen-activated protein kinase signaling pathway-plant, photosynthesis, phenylpropanoid biosynthesis and ATP-binding cassette transporters. Jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence in NN or LN, whereas auxin, gibberellin acid and cytokinins genes inhibited leaf senescence in HN. Major transcription factors: auxin/indole-3-acetic acid (AUX/IAA), no apical meristem (NAC) and WRKY expressed higher in either HN or LN than NN. The DEGs, pathways and transcription factors provide valuable insight for manipulation of leaf senescence and N remobilization in wheat.
•N fertilizer altered leaf senescence and N remobilization in spring wheat.•Phytohormones: jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence under N limited conditions.•Whereas phytohormones such as auxin, gibberelin acid and cytokinins related genes inhibited leaf senescence in high N condition.•Carotenoid biosynthetic genes were highly expressed under N limited conditions than high N condition. |
| doi_str_mv | 10.1016/j.ygeno.2022.110271 |
| format | Article |
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•N fertilizer altered leaf senescence and N remobilization in spring wheat.•Phytohormones: jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence under N limited conditions.•Whereas phytohormones such as auxin, gibberelin acid and cytokinins related genes inhibited leaf senescence in high N condition.•Carotenoid biosynthetic genes were highly expressed under N limited conditions than high N condition.</description><identifier>ISSN: 0888-7543</identifier><identifier>EISSN: 1089-8646</identifier><identifier>DOI: 10.1016/j.ygeno.2022.110271</identifier><identifier>PMID: 35065192</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>abscisic acid ; apical meristems ; auxins ; biosynthesis ; Biosynthetic pathway ; Biosynthetic Pathways ; brassinosteroids ; cultivars ; cytokinins ; Differentially expressed genes ; Fertilization ; Flag leaf ; flowering ; Gene Expression Profiling ; gene expression regulation ; Gene Expression Regulation, Plant ; genomics ; gibberellins ; Indoleacetic Acids - metabolism ; jasmonic acid ; leaves ; mitogen-activated protein kinase ; nitrogen ; Nitrogen - metabolism ; Nitrogen use efficiency ; photosynthesis ; Phytohormones ; Plant Leaves - genetics ; Plant Leaves - metabolism ; Plant Senescence ; salicylic acid ; signal transduction ; spring wheat ; transcription (genetics) ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Transcriptome ; Triticum - genetics ; Triticum - metabolism</subject><ispartof>Genomics (San Diego, Calif.), 2022-03, Vol.114 (2), p.110271-110271, Article 110271</ispartof><rights>2022 The Authors</rights><rights>Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c437t-347a9c172b332fbebe04af1c4e4fb143399b467763592b781fd428f61e4d59cd3</citedby><cites>FETCH-LOGICAL-c437t-347a9c172b332fbebe04af1c4e4fb143399b467763592b781fd428f61e4d59cd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0888754322000167$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,860,3537,27903,27904,65309</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35065192$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Effah, Zechariah</creatorcontrib><creatorcontrib>Li, Lingling</creatorcontrib><creatorcontrib>Xie, Junhong</creatorcontrib><creatorcontrib>Karikari, Benjamin</creatorcontrib><creatorcontrib>Liu, Chang</creatorcontrib><creatorcontrib>Xu, Aixia</creatorcontrib><creatorcontrib>Zeng, Min</creatorcontrib><title>Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates</title><title>Genomics (San Diego, Calif.)</title><addtitle>Genomics</addtitle><description>The present study was undertaken to profile transcriptional changes in flag leaves between anthesis and end of grain filling stages of rainfed spring wheat cultivar under varying nitrogen (N) application rates: 0 kg/ha (NN), 52.5 kg/ha (LN), and 210 kg/ha (HN). A total of 4485 and 4627 differentially expressed genes (DEGs) were detected in LN and HN, respectively. The differential application of N altered several pathways; including plant hormone signal transduction, mitogen-activated protein kinase signaling pathway-plant, photosynthesis, phenylpropanoid biosynthesis and ATP-binding cassette transporters. Jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence in NN or LN, whereas auxin, gibberellin acid and cytokinins genes inhibited leaf senescence in HN. Major transcription factors: auxin/indole-3-acetic acid (AUX/IAA), no apical meristem (NAC) and WRKY expressed higher in either HN or LN than NN. The DEGs, pathways and transcription factors provide valuable insight for manipulation of leaf senescence and N remobilization in wheat.
•N fertilizer altered leaf senescence and N remobilization in spring wheat.•Phytohormones: jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence under N limited conditions.•Whereas phytohormones such as auxin, gibberelin acid and cytokinins related genes inhibited leaf senescence in high N condition.•Carotenoid biosynthetic genes were highly expressed under N limited conditions than high N condition.</description><subject>abscisic acid</subject><subject>apical meristems</subject><subject>auxins</subject><subject>biosynthesis</subject><subject>Biosynthetic pathway</subject><subject>Biosynthetic Pathways</subject><subject>brassinosteroids</subject><subject>cultivars</subject><subject>cytokinins</subject><subject>Differentially expressed genes</subject><subject>Fertilization</subject><subject>Flag leaf</subject><subject>flowering</subject><subject>Gene Expression Profiling</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Plant</subject><subject>genomics</subject><subject>gibberellins</subject><subject>Indoleacetic Acids - metabolism</subject><subject>jasmonic acid</subject><subject>leaves</subject><subject>mitogen-activated protein kinase</subject><subject>nitrogen</subject><subject>Nitrogen - metabolism</subject><subject>Nitrogen use efficiency</subject><subject>photosynthesis</subject><subject>Phytohormones</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - metabolism</subject><subject>Plant Senescence</subject><subject>salicylic acid</subject><subject>signal transduction</subject><subject>spring wheat</subject><subject>transcription (genetics)</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Transcriptome</subject><subject>Triticum - genetics</subject><subject>Triticum - metabolism</subject><issn>0888-7543</issn><issn>1089-8646</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNUstu1DAUtRCIDgNfgIS8ZEEGv5I4CxaoooBUiU1ZW45z3fEosQfbmWr4Xj6kzkxpd4iVr6XzuI-D0FtKNpTQ5uNuc7wFHzaMMLahlLCWPkMrSmRXyUY0z9GKSCmrthb8Ar1KaUcI6bhkL9EFr0lT046t0J-bqH0y0e1zmADvY7BudP4WRziAHhOe9C5EnHKcTZ6jHnHxhPQB50eeCx5bbXKICWs_4N6FdPR5C9kZvNd5e6ePCTt_COMBhlLgEbTFadEx4A2cWN7lGIp2MZ5CX3r4rU_KBR6187Yw0z4und1tQWc8-wEiHpy1EMHnJ3755yd61BnSa_TCllngzcO7Rj-vvtxcfquuf3z9fvn5ujKCt7niotWdoS3rOWe2hx6I0JYaAcL2VHDedb1o2rbhdcf6VlI7CCZtQ0EMdWcGvkbvz7pljb9mSFlNrow4jtpDmJNijZCyaZns_gPKGGs7WczWiJ-hJoaUIlhV9jDpeFSUqCUJaqdOSVBLEtQ5CYX17sFg7icYHjl_T18An84AKBs5OIgqGbecY3ARTFZDcP80uAd2E84Y</recordid><startdate>202203</startdate><enddate>202203</enddate><creator>Effah, Zechariah</creator><creator>Li, Lingling</creator><creator>Xie, Junhong</creator><creator>Karikari, Benjamin</creator><creator>Liu, Chang</creator><creator>Xu, Aixia</creator><creator>Zeng, Min</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>202203</creationdate><title>Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates</title><author>Effah, Zechariah ; Li, Lingling ; Xie, Junhong ; Karikari, Benjamin ; Liu, Chang ; Xu, Aixia ; Zeng, Min</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c437t-347a9c172b332fbebe04af1c4e4fb143399b467763592b781fd428f61e4d59cd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>abscisic acid</topic><topic>apical meristems</topic><topic>auxins</topic><topic>biosynthesis</topic><topic>Biosynthetic pathway</topic><topic>Biosynthetic Pathways</topic><topic>brassinosteroids</topic><topic>cultivars</topic><topic>cytokinins</topic><topic>Differentially expressed genes</topic><topic>Fertilization</topic><topic>Flag leaf</topic><topic>flowering</topic><topic>Gene Expression Profiling</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Plant</topic><topic>genomics</topic><topic>gibberellins</topic><topic>Indoleacetic Acids - metabolism</topic><topic>jasmonic acid</topic><topic>leaves</topic><topic>mitogen-activated protein kinase</topic><topic>nitrogen</topic><topic>Nitrogen - metabolism</topic><topic>Nitrogen use efficiency</topic><topic>photosynthesis</topic><topic>Phytohormones</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - metabolism</topic><topic>Plant Senescence</topic><topic>salicylic acid</topic><topic>signal transduction</topic><topic>spring wheat</topic><topic>transcription (genetics)</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Transcriptome</topic><topic>Triticum - genetics</topic><topic>Triticum - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Effah, Zechariah</creatorcontrib><creatorcontrib>Li, Lingling</creatorcontrib><creatorcontrib>Xie, Junhong</creatorcontrib><creatorcontrib>Karikari, Benjamin</creatorcontrib><creatorcontrib>Liu, Chang</creatorcontrib><creatorcontrib>Xu, Aixia</creatorcontrib><creatorcontrib>Zeng, Min</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Genomics (San Diego, Calif.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Effah, Zechariah</au><au>Li, Lingling</au><au>Xie, Junhong</au><au>Karikari, Benjamin</au><au>Liu, Chang</au><au>Xu, Aixia</au><au>Zeng, Min</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates</atitle><jtitle>Genomics (San Diego, Calif.)</jtitle><addtitle>Genomics</addtitle><date>2022-03</date><risdate>2022</risdate><volume>114</volume><issue>2</issue><spage>110271</spage><epage>110271</epage><pages>110271-110271</pages><artnum>110271</artnum><issn>0888-7543</issn><eissn>1089-8646</eissn><abstract>The present study was undertaken to profile transcriptional changes in flag leaves between anthesis and end of grain filling stages of rainfed spring wheat cultivar under varying nitrogen (N) application rates: 0 kg/ha (NN), 52.5 kg/ha (LN), and 210 kg/ha (HN). A total of 4485 and 4627 differentially expressed genes (DEGs) were detected in LN and HN, respectively. The differential application of N altered several pathways; including plant hormone signal transduction, mitogen-activated protein kinase signaling pathway-plant, photosynthesis, phenylpropanoid biosynthesis and ATP-binding cassette transporters. Jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence in NN or LN, whereas auxin, gibberellin acid and cytokinins genes inhibited leaf senescence in HN. Major transcription factors: auxin/indole-3-acetic acid (AUX/IAA), no apical meristem (NAC) and WRKY expressed higher in either HN or LN than NN. The DEGs, pathways and transcription factors provide valuable insight for manipulation of leaf senescence and N remobilization in wheat.
•N fertilizer altered leaf senescence and N remobilization in spring wheat.•Phytohormones: jasmonic acid, abscisic acid, salicylic acid and brassinosteroid related genes promoted leaf senescence under N limited conditions.•Whereas phytohormones such as auxin, gibberelin acid and cytokinins related genes inhibited leaf senescence in high N condition.•Carotenoid biosynthetic genes were highly expressed under N limited conditions than high N condition.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>35065192</pmid><doi>10.1016/j.ygeno.2022.110271</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | abscisic acid apical meristems auxins biosynthesis Biosynthetic pathway Biosynthetic Pathways brassinosteroids cultivars cytokinins Differentially expressed genes Fertilization Flag leaf flowering Gene Expression Profiling gene expression regulation Gene Expression Regulation, Plant genomics gibberellins Indoleacetic Acids - metabolism jasmonic acid leaves mitogen-activated protein kinase nitrogen Nitrogen - metabolism Nitrogen use efficiency photosynthesis Phytohormones Plant Leaves - genetics Plant Leaves - metabolism Plant Senescence salicylic acid signal transduction spring wheat transcription (genetics) Transcription Factors - genetics Transcription Factors - metabolism Transcriptome Triticum - genetics Triticum - metabolism |
| title | Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates |
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