Calculating Entropies of Large Molecules in Aqueous Phase
Entropy benchmarking of different sized molecules in aqueous phase is carried out for known solvation models, where we compare geometry and solvation cavity packing parameters, which allows us to improve the accuracy of the obtained entropy values using empirical corrections. A comparison of solvati...
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Veröffentlicht in: | Journal of chemical theory and computation 2021-12, Vol.17 (12), p.7753-7771 |
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creator | Conquest, Oliver J Roman, Tanglaw Marianov, Aleksei Kochubei, Alena Jiang, Yijao Stampfl, Catherine |
description | Entropy benchmarking of different sized molecules in aqueous phase is carried out for known solvation models, where we compare geometry and solvation cavity packing parameters, which allows us to improve the accuracy of the obtained entropy values using empirical corrections. A comparison of solvation entropy models is conducted for a benchmarking set of 56 molecules, showing how an accurate description of cavitation entropy and its hindrance on other entropy values is important for large-sized solute molecules. Finally, we compare reaction free energies with entropies calculated using the most accurate solvation model considered, where we demonstrate a significant improvement in the accuracy relative to experimental values. |
doi_str_mv | 10.1021/acs.jctc.1c00848 |
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Chem. Theory Comput</addtitle><description>Entropy benchmarking of different sized molecules in aqueous phase is carried out for known solvation models, where we compare geometry and solvation cavity packing parameters, which allows us to improve the accuracy of the obtained entropy values using empirical corrections. A comparison of solvation entropy models is conducted for a benchmarking set of 56 molecules, showing how an accurate description of cavitation entropy and its hindrance on other entropy values is important for large-sized solute molecules. Finally, we compare reaction free energies with entropies calculated using the most accurate solvation model considered, where we demonstrate a significant improvement in the accuracy relative to experimental values.</description><subject>Benchmarks</subject><subject>Cavitation</subject><subject>Entropy</subject><subject>Solvation</subject><subject>Thermodynamics</subject><issn>1549-9618</issn><issn>1549-9626</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp1kDtPwzAURi0EoqWwM6FILAykXMeO44xVVR5SEQwwW45zU1KlcbGTof8elz4GJCZb9vm-e3UIuaYwppDQB238eGk6M6YGQHJ5QoY05Xmci0ScHu9UDsiF90sAxnjCzsmAcSkAqBiSfKob0ze6q9tFNGs7Z9c1-shW0Vy7BUavtsHwH57qNpp892h7H71_aY-X5KzSjcer_Tkin4-zj-lzPH97eplO5rFmgndxgTQF0CkvsBR5luSmKMuKUxQJLyoNkArACtJSisJQhpImKDhwBrLKeGbYiNztetfOhvm-U6vaG2wa3W6XUYkAkTNgIg3o7R90aXvXhu0CRQMgGWSBgh1lnPXeYaXWrl5pt1EU1FarClrVVqvaaw2Rm31xX6ywPAYOHgNwvwN-o4eh__b9ALCngYM</recordid><startdate>20211214</startdate><enddate>20211214</enddate><creator>Conquest, Oliver J</creator><creator>Roman, Tanglaw</creator><creator>Marianov, Aleksei</creator><creator>Kochubei, Alena</creator><creator>Jiang, Yijao</creator><creator>Stampfl, Catherine</creator><general>American Chemical Society</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6191-9825</orcidid><orcidid>https://orcid.org/0000-0001-7137-4307</orcidid></search><sort><creationdate>20211214</creationdate><title>Calculating Entropies of Large Molecules in Aqueous Phase</title><author>Conquest, Oliver J ; Roman, Tanglaw ; Marianov, Aleksei ; Kochubei, Alena ; Jiang, Yijao ; Stampfl, Catherine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a364t-be1500a54bed69729cbddf41e624bfa00560ef05d86bc13e812e6404308f747c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Benchmarks</topic><topic>Cavitation</topic><topic>Entropy</topic><topic>Solvation</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Conquest, Oliver J</creatorcontrib><creatorcontrib>Roman, Tanglaw</creatorcontrib><creatorcontrib>Marianov, Aleksei</creatorcontrib><creatorcontrib>Kochubei, Alena</creatorcontrib><creatorcontrib>Jiang, Yijao</creatorcontrib><creatorcontrib>Stampfl, Catherine</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of chemical theory and computation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Conquest, Oliver J</au><au>Roman, Tanglaw</au><au>Marianov, Aleksei</au><au>Kochubei, Alena</au><au>Jiang, Yijao</au><au>Stampfl, Catherine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Calculating Entropies of Large Molecules in Aqueous Phase</atitle><jtitle>Journal of chemical theory and computation</jtitle><addtitle>J. Chem. Theory Comput</addtitle><date>2021-12-14</date><risdate>2021</risdate><volume>17</volume><issue>12</issue><spage>7753</spage><epage>7771</epage><pages>7753-7771</pages><issn>1549-9618</issn><eissn>1549-9626</eissn><abstract>Entropy benchmarking of different sized molecules in aqueous phase is carried out for known solvation models, where we compare geometry and solvation cavity packing parameters, which allows us to improve the accuracy of the obtained entropy values using empirical corrections. A comparison of solvation entropy models is conducted for a benchmarking set of 56 molecules, showing how an accurate description of cavitation entropy and its hindrance on other entropy values is important for large-sized solute molecules. 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subjects | Benchmarks Cavitation Entropy Solvation Thermodynamics |
title | Calculating Entropies of Large Molecules in Aqueous Phase |
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