Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres
Two strains HN-1 T and 39 were isolated from rhizospheres of different plants grown in different regions of PR China. The two strains exhibited high nitrogenase activities and possessed almost identical 16S rRNA gene sequences. The average nucleotide identity (ANI) and digital DNA–DNA hybridization...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2022, Vol.115 (1), p.7-18 |
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| creator | Li, Qin Li, Yashi Liu, Xiaomeng Chen, Sanfeng |
| description | Two strains HN-1
T
and 39 were isolated from rhizospheres of different plants grown in different regions of PR China. The two strains exhibited high nitrogenase activities and possessed almost identical 16S rRNA gene sequences. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between the two strains were 99.9 and 99.8%, respectively, suggesting that they belong to one species. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strains HN-1
T
and 39 are the members of the genus
Paenibacillus
and both strains exhibited 99.5% similarity to
Paenibacillus stellifer
DSM 14472
T
and the both strains represented a separate lineage from all other
Paenibacillus
species. However, the ANI of type strain HN-1
T
with
P. stellifer
DSM 14472
T
was 90.69, which was below the recommended threshold value ( |
| doi_str_mv | 10.1007/s10482-021-01677-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2591215087</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2621423731</sourcerecordid><originalsourceid>FETCH-LOGICAL-c419t-7a57648b825230c9ca6fb0a028b4ded5074c4653ee9f65bb8665c637fbe815da3</originalsourceid><addsrcrecordid>eNp9kE2LFDEQhoMo7rj6BzxIgxcPZqwkna-jLH7Bgh705CGk09WzWXqSNule1F9vdFYFD54qRT31pngIecxgzwD0i8qgN5wCZxSY0pqqO2THpObUKmvvkh0ACKpA8zPyoNbr1lpl9H1yJnrNjAWzI58_eExx8CHO81a7GhOmGttj2Xcp3-yfd75LcS35gIlO8WtMhzbDELF2sebZrzh2U8nHbpl9WrtyFb_nulxhwfqQ3Jv8XPHRbT0nn16_-njxll6-f_Pu4uUlDT2zK9VeatWbwXDJBQQbvJoG8MDN0I84StB96JUUiHZSchiMUjIooacBDZOjF-fk2Sl3KfnLhnV1x1gDzu0gzFt1XFrGmQSjG_r0H_Q6byW16xxXnPVcaMEaxU9UKLnWgpNbSjz68s0xcD_Vu5N619S7X-qdaktPbqO34Yjjn5XfrhsgTkBto3TA8vfv_8T-AKswjq4</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2621423731</pqid></control><display><type>article</type><title>Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres</title><source>MEDLINE</source><source>SpringerNature Journals</source><creator>Li, Qin ; Li, Yashi ; Liu, Xiaomeng ; Chen, Sanfeng</creator><creatorcontrib>Li, Qin ; Li, Yashi ; Liu, Xiaomeng ; Chen, Sanfeng</creatorcontrib><description>Two strains HN-1
T
and 39 were isolated from rhizospheres of different plants grown in different regions of PR China. The two strains exhibited high nitrogenase activities and possessed almost identical 16S rRNA gene sequences. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between the two strains were 99.9 and 99.8%, respectively, suggesting that they belong to one species. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strains HN-1
T
and 39 are the members of the genus
Paenibacillus
and both strains exhibited 99.5% similarity to
Paenibacillus stellifer
DSM 14472
T
and the both strains represented a separate lineage from all other
Paenibacillus
species. However, the ANI of type strain HN-1
T
with
P. stellifer
DSM 14472
T
was 90.69, which was below the recommended threshold value (< 95–96% ANI). The dDDH showed 42.1% relatedness between strain HN-1
T
and
P. stellifer
DSM 14472
T
, which was lower than the recommended threshold value (dDDH < 70%). The strain HN-1
T
contain anteiso-C
15:0
as major fatty acids and MK-7 as predominant isoprenoid quinone. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, four aminophospholipids and an unidentified glycolipid. Unlike the most closely related
P. stellifer
DSM 14472
T
, strain HN-1
T
or 39 was positive for catalase reaction. Distinct phenotypic and genomic characterisations from previously described taxa support the classification of strains HN-1
T
or 39 as representatives of a novel species of the genus
Paenibacillus
, for which the name
Paenibacillus sinensis
is proposed, with type strains HN-1
T
(=CGMCC 1.18902, JCM 34,620), and reference strain 39 (=CGMCC 1.18879, JCM 34,616), respectively.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01677-6</identifier><identifier>PMID: 34718908</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Bacteria ; Base Composition ; Biomedical and Life Sciences ; Cardiolipin ; Catalase ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; Fatty acids ; Gene sequencing ; Genes ; Genomes ; Genomics ; Hybridization ; Life Sciences ; Lipids ; Medical Microbiology ; Microbiology ; New species ; Nitrogen ; Nitrogen fixation ; Nitrogenase ; Nitrogenation ; Nucleotide sequence ; Nucleotides ; Original Paper ; Paenibacillus ; Paenibacillus - genetics ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phylogenetics ; Phylogeny ; Plant introductions ; Plant Sciences ; Proteins ; Quinones ; Rhizosphere ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Soil Science & Conservation</subject><ispartof>Antonie van Leeuwenhoek, 2022, Vol.115 (1), p.7-18</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c419t-7a57648b825230c9ca6fb0a028b4ded5074c4653ee9f65bb8665c637fbe815da3</citedby><cites>FETCH-LOGICAL-c419t-7a57648b825230c9ca6fb0a028b4ded5074c4653ee9f65bb8665c637fbe815da3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01677-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01677-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34718908$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Qin</creatorcontrib><creatorcontrib>Li, Yashi</creatorcontrib><creatorcontrib>Liu, Xiaomeng</creatorcontrib><creatorcontrib>Chen, Sanfeng</creatorcontrib><title>Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>Two strains HN-1
T
and 39 were isolated from rhizospheres of different plants grown in different regions of PR China. The two strains exhibited high nitrogenase activities and possessed almost identical 16S rRNA gene sequences. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between the two strains were 99.9 and 99.8%, respectively, suggesting that they belong to one species. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strains HN-1
T
and 39 are the members of the genus
Paenibacillus
and both strains exhibited 99.5% similarity to
Paenibacillus stellifer
DSM 14472
T
and the both strains represented a separate lineage from all other
Paenibacillus
species. However, the ANI of type strain HN-1
T
with
P. stellifer
DSM 14472
T
was 90.69, which was below the recommended threshold value (< 95–96% ANI). The dDDH showed 42.1% relatedness between strain HN-1
T
and
P. stellifer
DSM 14472
T
, which was lower than the recommended threshold value (dDDH < 70%). The strain HN-1
T
contain anteiso-C
15:0
as major fatty acids and MK-7 as predominant isoprenoid quinone. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, four aminophospholipids and an unidentified glycolipid. Unlike the most closely related
P. stellifer
DSM 14472
T
, strain HN-1
T
or 39 was positive for catalase reaction. Distinct phenotypic and genomic characterisations from previously described taxa support the classification of strains HN-1
T
or 39 as representatives of a novel species of the genus
Paenibacillus
, for which the name
Paenibacillus sinensis
is proposed, with type strains HN-1
T
(=CGMCC 1.18902, JCM 34,620), and reference strain 39 (=CGMCC 1.18879, JCM 34,616), respectively.</description><subject>Bacteria</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Cardiolipin</subject><subject>Catalase</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty acids</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nitrogen</subject><subject>Nitrogen fixation</subject><subject>Nitrogenase</subject><subject>Nitrogenation</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Paenibacillus</subject><subject>Paenibacillus - genetics</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant introductions</subject><subject>Plant Sciences</subject><subject>Proteins</subject><subject>Quinones</subject><subject>Rhizosphere</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Soil Science & Conservation</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kE2LFDEQhoMo7rj6BzxIgxcPZqwkna-jLH7Bgh705CGk09WzWXqSNule1F9vdFYFD54qRT31pngIecxgzwD0i8qgN5wCZxSY0pqqO2THpObUKmvvkh0ACKpA8zPyoNbr1lpl9H1yJnrNjAWzI58_eExx8CHO81a7GhOmGttj2Xcp3-yfd75LcS35gIlO8WtMhzbDELF2sebZrzh2U8nHbpl9WrtyFb_nulxhwfqQ3Jv8XPHRbT0nn16_-njxll6-f_Pu4uUlDT2zK9VeatWbwXDJBQQbvJoG8MDN0I84StB96JUUiHZSchiMUjIooacBDZOjF-fk2Sl3KfnLhnV1x1gDzu0gzFt1XFrGmQSjG_r0H_Q6byW16xxXnPVcaMEaxU9UKLnWgpNbSjz68s0xcD_Vu5N619S7X-qdaktPbqO34Yjjn5XfrhsgTkBto3TA8vfv_8T-AKswjq4</recordid><startdate>2022</startdate><enddate>2022</enddate><creator>Li, Qin</creator><creator>Li, Yashi</creator><creator>Liu, Xiaomeng</creator><creator>Chen, Sanfeng</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>2022</creationdate><title>Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres</title><author>Li, Qin ; Li, Yashi ; Liu, Xiaomeng ; Chen, Sanfeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-7a57648b825230c9ca6fb0a028b4ded5074c4653ee9f65bb8665c637fbe815da3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bacteria</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Cardiolipin</topic><topic>Catalase</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty acids</topic><topic>Gene sequencing</topic><topic>Genes</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nitrogen</topic><topic>Nitrogen fixation</topic><topic>Nitrogenase</topic><topic>Nitrogenation</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Paenibacillus</topic><topic>Paenibacillus - genetics</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant introductions</topic><topic>Plant Sciences</topic><topic>Proteins</topic><topic>Quinones</topic><topic>Rhizosphere</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Soil Science & Conservation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Qin</creatorcontrib><creatorcontrib>Li, Yashi</creatorcontrib><creatorcontrib>Liu, Xiaomeng</creatorcontrib><creatorcontrib>Chen, Sanfeng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health Medical collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Qin</au><au>Li, Yashi</au><au>Liu, Xiaomeng</au><au>Chen, Sanfeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2022</date><risdate>2022</risdate><volume>115</volume><issue>1</issue><spage>7</spage><epage>18</epage><pages>7-18</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>Two strains HN-1
T
and 39 were isolated from rhizospheres of different plants grown in different regions of PR China. The two strains exhibited high nitrogenase activities and possessed almost identical 16S rRNA gene sequences. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between the two strains were 99.9 and 99.8%, respectively, suggesting that they belong to one species. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strains HN-1
T
and 39 are the members of the genus
Paenibacillus
and both strains exhibited 99.5% similarity to
Paenibacillus stellifer
DSM 14472
T
and the both strains represented a separate lineage from all other
Paenibacillus
species. However, the ANI of type strain HN-1
T
with
P. stellifer
DSM 14472
T
was 90.69, which was below the recommended threshold value (< 95–96% ANI). The dDDH showed 42.1% relatedness between strain HN-1
T
and
P. stellifer
DSM 14472
T
, which was lower than the recommended threshold value (dDDH < 70%). The strain HN-1
T
contain anteiso-C
15:0
as major fatty acids and MK-7 as predominant isoprenoid quinone. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, four aminophospholipids and an unidentified glycolipid. Unlike the most closely related
P. stellifer
DSM 14472
T
, strain HN-1
T
or 39 was positive for catalase reaction. Distinct phenotypic and genomic characterisations from previously described taxa support the classification of strains HN-1
T
or 39 as representatives of a novel species of the genus
Paenibacillus
, for which the name
Paenibacillus sinensis
is proposed, with type strains HN-1
T
(=CGMCC 1.18902, JCM 34,620), and reference strain 39 (=CGMCC 1.18879, JCM 34,616), respectively.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>34718908</pmid><doi>10.1007/s10482-021-01677-6</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
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| ispartof | Antonie van Leeuwenhoek, 2022, Vol.115 (1), p.7-18 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2591215087 |
| source | MEDLINE; SpringerNature Journals |
| subjects | Bacteria Base Composition Biomedical and Life Sciences Cardiolipin Catalase Deoxyribonucleic acid DNA DNA, Bacterial - genetics Fatty acids Gene sequencing Genes Genomes Genomics Hybridization Life Sciences Lipids Medical Microbiology Microbiology New species Nitrogen Nitrogen fixation Nitrogenase Nitrogenation Nucleotide sequence Nucleotides Original Paper Paenibacillus Paenibacillus - genetics Phosphatidylethanolamine Phosphatidylglycerol Phylogenetics Phylogeny Plant introductions Plant Sciences Proteins Quinones Rhizosphere RNA, Ribosomal, 16S - genetics rRNA 16S Soil Science & Conservation |
| title | Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres |
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