The utility of whole-exome sequencing in accurate diagnosis of neuromuscular disorders in consanguineous families in Jordan

•Whole-exome sequencing (WES) was conducted to investigate the genetic mutations among NMD Jordanian patients.•Utilization of WES is helpful in facilitating rapid and accurate diagnosis of patients with NMDs.•WES helps in the identifying genetic risks among consanguineous couples. Neuromuscular diso...

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Veröffentlicht in:Clinica chimica acta 2021-12, Vol.523, p.330-338
Hauptverfasser: Ababneh, Nidaa A., Ali, Dema, Al-Kurdi, Ban, Barham, Raghda, Bsisu, Isam K., Dababseh, Deema, Arafat, Sally, Khanfar, Asim N, Makahleh, Leen, Ryalat, Abdee T., Sallam, Malik, El-Khateeb, Mohammed, Sharrack, Basil, Awidi, Abdalla
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container_title Clinica chimica acta
container_volume 523
creator Ababneh, Nidaa A.
Ali, Dema
Al-Kurdi, Ban
Barham, Raghda
Bsisu, Isam K.
Dababseh, Deema
Arafat, Sally
Khanfar, Asim N
Makahleh, Leen
Ryalat, Abdee T.
Sallam, Malik
El-Khateeb, Mohammed
Sharrack, Basil
Awidi, Abdalla
description •Whole-exome sequencing (WES) was conducted to investigate the genetic mutations among NMD Jordanian patients.•Utilization of WES is helpful in facilitating rapid and accurate diagnosis of patients with NMDs.•WES helps in the identifying genetic risks among consanguineous couples. Neuromuscular disorders (NMDs) encompass a large group of genetic and acquired diseases affecting muscles, leading to progressive muscular weakness. These disorders are frequently inherited in an autosomal-recessive (AR) pattern with extreme heterogeneity and various clinical presentations. Consanguinity increases the likelihood of AR disorders, with high rates of cousin inbreeding in Jordan and other Arab countries. In Jordan, the implementation of genetic diagnosis is limited, with delayed or misdiagnosis of genetic disorders. Thus, the lack of genetic counselling and specialized treatment options is frequently encountered in the country. Whole-exome sequencing (WES) was conducted for eleven probands from ten Jordanian families who have been formerly diagnosed with limb-girdle dystrophy (LGMD) and Charcot-Marie-Tooth disease (CMT). The previous diagnoses were established principally on clinical examination in the absence of genetic testing. Additionally, Sanger sequencing and segregation analysis were used to validate the resulted pathogenic variants. Multiple variants were identified using WES: For DYSF gene, a missense variant (c. 4076 T > C, p.Leu1359Pro) in exon 38; a nonsense variant (c. 4321C > T, p.Gln1441Ter) in exon 39; a single‐nucleotide deletion (c. 5711delG, p.Gly1904AlafsTer101) in exon 51. Other variants included a missense variant (c. 122G > A, p.Arg41Gln) in exon 3 of MPV17 gene, a single‐nucleotide deletion (c. 859 delC, p.Lue287Ser fs14*) in exon 6 of SGCB gene, a missense variant (c. 311G > A, p.Gly104Asp) in exon 2 of SLC25A46 gene, a nonsense variant (c. 496C > T, p.Arg166Ter) in exon 5 of SGCG gene, and a nonsense variant (c.3202C > T, p.Gln1068Ter) in exon 13 of SH3TC2 gene. Utilization of WES is helpful to facilitate rapid and accurate NMDs diagnosis, complementing a thorough clinical evaluation. This approach can be invaluable to aid in the identification of genetic risks among consanguineous couples. Subsequently, well-informed genetic counselling and potential individualized treatment can be provided.
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Neuromuscular disorders (NMDs) encompass a large group of genetic and acquired diseases affecting muscles, leading to progressive muscular weakness. These disorders are frequently inherited in an autosomal-recessive (AR) pattern with extreme heterogeneity and various clinical presentations. Consanguinity increases the likelihood of AR disorders, with high rates of cousin inbreeding in Jordan and other Arab countries. In Jordan, the implementation of genetic diagnosis is limited, with delayed or misdiagnosis of genetic disorders. Thus, the lack of genetic counselling and specialized treatment options is frequently encountered in the country. Whole-exome sequencing (WES) was conducted for eleven probands from ten Jordanian families who have been formerly diagnosed with limb-girdle dystrophy (LGMD) and Charcot-Marie-Tooth disease (CMT). The previous diagnoses were established principally on clinical examination in the absence of genetic testing. Additionally, Sanger sequencing and segregation analysis were used to validate the resulted pathogenic variants. Multiple variants were identified using WES: For DYSF gene, a missense variant (c. 4076 T &gt; C, p.Leu1359Pro) in exon 38; a nonsense variant (c. 4321C &gt; T, p.Gln1441Ter) in exon 39; a single‐nucleotide deletion (c. 5711delG, p.Gly1904AlafsTer101) in exon 51. Other variants included a missense variant (c. 122G &gt; A, p.Arg41Gln) in exon 3 of MPV17 gene, a single‐nucleotide deletion (c. 859 delC, p.Lue287Ser fs14*) in exon 6 of SGCB gene, a missense variant (c. 311G &gt; A, p.Gly104Asp) in exon 2 of SLC25A46 gene, a nonsense variant (c. 496C &gt; T, p.Arg166Ter) in exon 5 of SGCG gene, and a nonsense variant (c.3202C &gt; T, p.Gln1068Ter) in exon 13 of SH3TC2 gene. Utilization of WES is helpful to facilitate rapid and accurate NMDs diagnosis, complementing a thorough clinical evaluation. 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Neuromuscular disorders (NMDs) encompass a large group of genetic and acquired diseases affecting muscles, leading to progressive muscular weakness. These disorders are frequently inherited in an autosomal-recessive (AR) pattern with extreme heterogeneity and various clinical presentations. Consanguinity increases the likelihood of AR disorders, with high rates of cousin inbreeding in Jordan and other Arab countries. In Jordan, the implementation of genetic diagnosis is limited, with delayed or misdiagnosis of genetic disorders. Thus, the lack of genetic counselling and specialized treatment options is frequently encountered in the country. Whole-exome sequencing (WES) was conducted for eleven probands from ten Jordanian families who have been formerly diagnosed with limb-girdle dystrophy (LGMD) and Charcot-Marie-Tooth disease (CMT). The previous diagnoses were established principally on clinical examination in the absence of genetic testing. Additionally, Sanger sequencing and segregation analysis were used to validate the resulted pathogenic variants. Multiple variants were identified using WES: For DYSF gene, a missense variant (c. 4076 T &gt; C, p.Leu1359Pro) in exon 38; a nonsense variant (c. 4321C &gt; T, p.Gln1441Ter) in exon 39; a single‐nucleotide deletion (c. 5711delG, p.Gly1904AlafsTer101) in exon 51. Other variants included a missense variant (c. 122G &gt; A, p.Arg41Gln) in exon 3 of MPV17 gene, a single‐nucleotide deletion (c. 859 delC, p.Lue287Ser fs14*) in exon 6 of SGCB gene, a missense variant (c. 311G &gt; A, p.Gly104Asp) in exon 2 of SLC25A46 gene, a nonsense variant (c. 496C &gt; T, p.Arg166Ter) in exon 5 of SGCG gene, and a nonsense variant (c.3202C &gt; T, p.Gln1068Ter) in exon 13 of SH3TC2 gene. Utilization of WES is helpful to facilitate rapid and accurate NMDs diagnosis, complementing a thorough clinical evaluation. This approach can be invaluable to aid in the identification of genetic risks among consanguineous couples. 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Neuromuscular disorders (NMDs) encompass a large group of genetic and acquired diseases affecting muscles, leading to progressive muscular weakness. These disorders are frequently inherited in an autosomal-recessive (AR) pattern with extreme heterogeneity and various clinical presentations. Consanguinity increases the likelihood of AR disorders, with high rates of cousin inbreeding in Jordan and other Arab countries. In Jordan, the implementation of genetic diagnosis is limited, with delayed or misdiagnosis of genetic disorders. Thus, the lack of genetic counselling and specialized treatment options is frequently encountered in the country. Whole-exome sequencing (WES) was conducted for eleven probands from ten Jordanian families who have been formerly diagnosed with limb-girdle dystrophy (LGMD) and Charcot-Marie-Tooth disease (CMT). The previous diagnoses were established principally on clinical examination in the absence of genetic testing. Additionally, Sanger sequencing and segregation analysis were used to validate the resulted pathogenic variants. Multiple variants were identified using WES: For DYSF gene, a missense variant (c. 4076 T &gt; C, p.Leu1359Pro) in exon 38; a nonsense variant (c. 4321C &gt; T, p.Gln1441Ter) in exon 39; a single‐nucleotide deletion (c. 5711delG, p.Gly1904AlafsTer101) in exon 51. Other variants included a missense variant (c. 122G &gt; A, p.Arg41Gln) in exon 3 of MPV17 gene, a single‐nucleotide deletion (c. 859 delC, p.Lue287Ser fs14*) in exon 6 of SGCB gene, a missense variant (c. 311G &gt; A, p.Gly104Asp) in exon 2 of SLC25A46 gene, a nonsense variant (c. 496C &gt; T, p.Arg166Ter) in exon 5 of SGCG gene, and a nonsense variant (c.3202C &gt; T, p.Gln1068Ter) in exon 13 of SH3TC2 gene. Utilization of WES is helpful to facilitate rapid and accurate NMDs diagnosis, complementing a thorough clinical evaluation. 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subjects Autosomal-recessive
Consanguinity
Genetic Testing
Humans
Jordan
Mitochondrial Proteins
Movement disorders
Muscular Dystrophies, Limb-Girdle
Pedigree
Phosphate Transport Proteins
Whole Exome Sequencing
title The utility of whole-exome sequencing in accurate diagnosis of neuromuscular disorders in consanguineous families in Jordan
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