Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea
A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469 T , was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469 T grew optimally at temperature of 40 °C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxi...
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description | A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469
T
, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469
T
grew optimally at temperature of 40 °C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxidase activities, H
2
S production, nitrate reduction and hydrolysis of Tween 20 were positive. Indole, methyl red reaction, urease, hydrolysis of gelatin, starch, casein, Tweens 40, 60 and 80 were negative. The major cellular fatty acids were C
16:0
, C
19:0
cyclo
ω
8
c
and summed feature 8 (C
18:1
ω
7
c
and/or C
18:1
ω
6
c
). The only respiratory quinone was ubiquinone-10 (Q-10). The major polar lipids were phosphatidylglycerol, two unidentified amino-phospholipids and two unidentified phospholipids. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name
Nisaea nitritireducens
DR41_18
T
(98.1%) and
Nisaea denitrificans
DR41_21
T
(97.6%). Phylogenetic analyses indicated that strain NBU1469
T
formed a distinct lineage with strains
Nisaea nitritireducens
DR41_18
T
and
Nisaea denitrificans
DR41_21
T
within the genus
Nisaea
. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1469
T
and related species of genus
Nisaea
were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.6%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1469
T
is considered to be a representative of a novel species in the genus
Nisaea
, for which the name
Nisaea sediminum
sp. nov. is proposed. The type strain is NBU1469
T
(=KCTC 82224
T
=MCCC 1K04763
T
). |
doi_str_mv | 10.1007/s10482-021-01665-w |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2576916536</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2576916536</sourcerecordid><originalsourceid>FETCH-LOGICAL-c396t-f8335f40163714f98d25d61b89ab3eb8570aa20750ea5174c09fe7f82e28ad3</originalsourceid><addsrcrecordid>eNp9kU1r3DAQhkVIoZu0f6AnQS89xFt9rCTrWJYkDYT2kN7FrD3OKtjyVqNNyL-vUhcCOfQ0DDzvywwPY5-kWEsh3FeSYtOqRijZCGmtaZ5O2EoapxpvvT9lKyGEbqxw6j07I3qoq7etW7HDj0iAwAn7OMV0nDgd1jzNj-sLDnyP8PjMJyww8owUqUAqfAddwRwrG2keoWDPhzxPfIIcEy5VWLmYeNkjvwQqfLuPCfgdwgf2boCR8OO_ec7uri5_bb83tz-vb7bfbptOe1uaodXaDJv6jHZyM_i2V6a3ctd62GnctcYJACWcEQhGuk0n_IBuaBWqFnp9zr4srYc8_z4ilTBF6nAcIeF8pKCMs15ao21FP79BH-ZjTvW2SnnjnNfGVUotVJdnooxDOORYH34OUoQXBWFREKqC8FdBeKohvYSowuke82v1f1J_ABsOiWA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2595779357</pqid></control><display><type>article</type><title>Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea</title><source>SpringerLink Journals - AutoHoldings</source><creator>Zhu, Suting ; Cheng, Yuping ; Guo, Chaobo ; Xie, Feilu ; Jung, Dawoon ; Zhang, Weiyan ; He, Shan</creator><creatorcontrib>Zhu, Suting ; Cheng, Yuping ; Guo, Chaobo ; Xie, Feilu ; Jung, Dawoon ; Zhang, Weiyan ; He, Shan</creatorcontrib><description>A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469
T
, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469
T
grew optimally at temperature of 40 °C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxidase activities, H
2
S production, nitrate reduction and hydrolysis of Tween 20 were positive. Indole, methyl red reaction, urease, hydrolysis of gelatin, starch, casein, Tweens 40, 60 and 80 were negative. The major cellular fatty acids were C
16:0
, C
19:0
cyclo
ω
8
c
and summed feature 8 (C
18:1
ω
7
c
and/or C
18:1
ω
6
c
). The only respiratory quinone was ubiquinone-10 (Q-10). The major polar lipids were phosphatidylglycerol, two unidentified amino-phospholipids and two unidentified phospholipids. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name
Nisaea nitritireducens
DR41_18
T
(98.1%) and
Nisaea denitrificans
DR41_21
T
(97.6%). Phylogenetic analyses indicated that strain NBU1469
T
formed a distinct lineage with strains
Nisaea nitritireducens
DR41_18
T
and
Nisaea denitrificans
DR41_21
T
within the genus
Nisaea
. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1469
T
and related species of genus
Nisaea
were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.6%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1469
T
is considered to be a representative of a novel species in the genus
Nisaea
, for which the name
Nisaea sediminum
sp. nov. is proposed. The type strain is NBU1469
T
(=KCTC 82224
T
=MCCC 1K04763
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01665-w</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Antibiotics ; Bacteria ; Biomedical and Life Sciences ; Casein ; Catalase ; Coenzyme Q10 ; Comparative analysis ; Deoxyribonucleic acid ; DNA ; Fatty acids ; Gelatin ; Heavy metals ; Hybridization ; Hydrogen sulfide ; Hydrolysis ; Life Sciences ; Lipids ; Marine sediments ; Medical Microbiology ; Microbiology ; Microscopy ; New species ; Nitrate reduction ; Nucleotides ; Original Paper ; Phosphatidylglycerol ; Phospholipids ; Phylogeny ; Physiology ; Plant Sciences ; Quinones ; rRNA 16S ; Sediment samplers ; Sediments ; Sodium ; Sodium chloride ; Soil Science & Conservation ; Urease</subject><ispartof>Antonie van Leeuwenhoek, 2021-12, Vol.114 (12), p.2113-2121</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c396t-f8335f40163714f98d25d61b89ab3eb8570aa20750ea5174c09fe7f82e28ad3</citedby><cites>FETCH-LOGICAL-c396t-f8335f40163714f98d25d61b89ab3eb8570aa20750ea5174c09fe7f82e28ad3</cites><orcidid>0000-0003-0436-1658</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01665-w$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01665-w$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27915,27916,41479,42548,51310</link.rule.ids></links><search><creatorcontrib>Zhu, Suting</creatorcontrib><creatorcontrib>Cheng, Yuping</creatorcontrib><creatorcontrib>Guo, Chaobo</creatorcontrib><creatorcontrib>Xie, Feilu</creatorcontrib><creatorcontrib>Jung, Dawoon</creatorcontrib><creatorcontrib>Zhang, Weiyan</creatorcontrib><creatorcontrib>He, Shan</creatorcontrib><title>Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><description>A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469
T
, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469
T
grew optimally at temperature of 40 °C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxidase activities, H
2
S production, nitrate reduction and hydrolysis of Tween 20 were positive. Indole, methyl red reaction, urease, hydrolysis of gelatin, starch, casein, Tweens 40, 60 and 80 were negative. The major cellular fatty acids were C
16:0
, C
19:0
cyclo
ω
8
c
and summed feature 8 (C
18:1
ω
7
c
and/or C
18:1
ω
6
c
). The only respiratory quinone was ubiquinone-10 (Q-10). The major polar lipids were phosphatidylglycerol, two unidentified amino-phospholipids and two unidentified phospholipids. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name
Nisaea nitritireducens
DR41_18
T
(98.1%) and
Nisaea denitrificans
DR41_21
T
(97.6%). Phylogenetic analyses indicated that strain NBU1469
T
formed a distinct lineage with strains
Nisaea nitritireducens
DR41_18
T
and
Nisaea denitrificans
DR41_21
T
within the genus
Nisaea
. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1469
T
and related species of genus
Nisaea
were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.6%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1469
T
is considered to be a representative of a novel species in the genus
Nisaea
, for which the name
Nisaea sediminum
sp. nov. is proposed. The type strain is NBU1469
T
(=KCTC 82224
T
=MCCC 1K04763
T
).</description><subject>Antibiotics</subject><subject>Bacteria</subject><subject>Biomedical and Life Sciences</subject><subject>Casein</subject><subject>Catalase</subject><subject>Coenzyme Q10</subject><subject>Comparative analysis</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fatty acids</subject><subject>Gelatin</subject><subject>Heavy metals</subject><subject>Hybridization</subject><subject>Hydrogen sulfide</subject><subject>Hydrolysis</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Marine sediments</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Microscopy</subject><subject>New species</subject><subject>Nitrate reduction</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylglycerol</subject><subject>Phospholipids</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Plant Sciences</subject><subject>Quinones</subject><subject>rRNA 16S</subject><subject>Sediment samplers</subject><subject>Sediments</subject><subject>Sodium</subject><subject>Sodium chloride</subject><subject>Soil Science & Conservation</subject><subject>Urease</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1r3DAQhkVIoZu0f6AnQS89xFt9rCTrWJYkDYT2kN7FrD3OKtjyVqNNyL-vUhcCOfQ0DDzvywwPY5-kWEsh3FeSYtOqRijZCGmtaZ5O2EoapxpvvT9lKyGEbqxw6j07I3qoq7etW7HDj0iAwAn7OMV0nDgd1jzNj-sLDnyP8PjMJyww8owUqUAqfAddwRwrG2keoWDPhzxPfIIcEy5VWLmYeNkjvwQqfLuPCfgdwgf2boCR8OO_ec7uri5_bb83tz-vb7bfbptOe1uaodXaDJv6jHZyM_i2V6a3ctd62GnctcYJACWcEQhGuk0n_IBuaBWqFnp9zr4srYc8_z4ilTBF6nAcIeF8pKCMs15ao21FP79BH-ZjTvW2SnnjnNfGVUotVJdnooxDOORYH34OUoQXBWFREKqC8FdBeKohvYSowuke82v1f1J_ABsOiWA</recordid><startdate>20211201</startdate><enddate>20211201</enddate><creator>Zhu, Suting</creator><creator>Cheng, Yuping</creator><creator>Guo, Chaobo</creator><creator>Xie, Feilu</creator><creator>Jung, Dawoon</creator><creator>Zhang, Weiyan</creator><creator>He, Shan</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0436-1658</orcidid></search><sort><creationdate>20211201</creationdate><title>Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea</title><author>Zhu, Suting ; Cheng, Yuping ; Guo, Chaobo ; Xie, Feilu ; Jung, Dawoon ; Zhang, Weiyan ; He, Shan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c396t-f8335f40163714f98d25d61b89ab3eb8570aa20750ea5174c09fe7f82e28ad3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Antibiotics</topic><topic>Bacteria</topic><topic>Biomedical and Life Sciences</topic><topic>Casein</topic><topic>Catalase</topic><topic>Coenzyme Q10</topic><topic>Comparative analysis</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Fatty acids</topic><topic>Gelatin</topic><topic>Heavy metals</topic><topic>Hybridization</topic><topic>Hydrogen sulfide</topic><topic>Hydrolysis</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Marine sediments</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Microscopy</topic><topic>New species</topic><topic>Nitrate reduction</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylglycerol</topic><topic>Phospholipids</topic><topic>Phylogeny</topic><topic>Physiology</topic><topic>Plant Sciences</topic><topic>Quinones</topic><topic>rRNA 16S</topic><topic>Sediment samplers</topic><topic>Sediments</topic><topic>Sodium</topic><topic>Sodium chloride</topic><topic>Soil Science & Conservation</topic><topic>Urease</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhu, Suting</creatorcontrib><creatorcontrib>Cheng, Yuping</creatorcontrib><creatorcontrib>Guo, Chaobo</creatorcontrib><creatorcontrib>Xie, Feilu</creatorcontrib><creatorcontrib>Jung, Dawoon</creatorcontrib><creatorcontrib>Zhang, Weiyan</creatorcontrib><creatorcontrib>He, Shan</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central 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Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest Science Journals</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhu, Suting</au><au>Cheng, Yuping</au><au>Guo, Chaobo</au><au>Xie, Feilu</au><au>Jung, Dawoon</au><au>Zhang, Weiyan</au><au>He, Shan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><date>2021-12-01</date><risdate>2021</risdate><volume>114</volume><issue>12</issue><spage>2113</spage><epage>2121</epage><pages>2113-2121</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469
T
, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469
T
grew optimally at temperature of 40 °C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxidase activities, H
2
S production, nitrate reduction and hydrolysis of Tween 20 were positive. Indole, methyl red reaction, urease, hydrolysis of gelatin, starch, casein, Tweens 40, 60 and 80 were negative. The major cellular fatty acids were C
16:0
, C
19:0
cyclo
ω
8
c
and summed feature 8 (C
18:1
ω
7
c
and/or C
18:1
ω
6
c
). The only respiratory quinone was ubiquinone-10 (Q-10). The major polar lipids were phosphatidylglycerol, two unidentified amino-phospholipids and two unidentified phospholipids. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name
Nisaea nitritireducens
DR41_18
T
(98.1%) and
Nisaea denitrificans
DR41_21
T
(97.6%). Phylogenetic analyses indicated that strain NBU1469
T
formed a distinct lineage with strains
Nisaea nitritireducens
DR41_18
T
and
Nisaea denitrificans
DR41_21
T
within the genus
Nisaea
. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1469
T
and related species of genus
Nisaea
were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.6%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1469
T
is considered to be a representative of a novel species in the genus
Nisaea
, for which the name
Nisaea sediminum
sp. nov. is proposed. The type strain is NBU1469
T
(=KCTC 82224
T
=MCCC 1K04763
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s10482-021-01665-w</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0003-0436-1658</orcidid><oa>free_for_read</oa></addata></record> |
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issn | 0003-6072 1572-9699 |
language | eng |
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source | SpringerLink Journals - AutoHoldings |
subjects | Antibiotics Bacteria Biomedical and Life Sciences Casein Catalase Coenzyme Q10 Comparative analysis Deoxyribonucleic acid DNA Fatty acids Gelatin Heavy metals Hybridization Hydrogen sulfide Hydrolysis Life Sciences Lipids Marine sediments Medical Microbiology Microbiology Microscopy New species Nitrate reduction Nucleotides Original Paper Phosphatidylglycerol Phospholipids Phylogeny Physiology Plant Sciences Quinones rRNA 16S Sediment samplers Sediments Sodium Sodium chloride Soil Science & Conservation Urease |
title | Nisaea sediminum sp. nov., a heavy metal resistant bacterium isolated from marine sediment in the East China Sea |
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