Streptomyces endocoffeicus sp. nov., an endophytic actinomycete isolated from Coffea arabica (L.)

An aerobic, non-motile, Gram-stain positive actinomycete, designated strain CA3R110 T , was isolated from the surface-sterilised root of Coffea arabica L. collected from Lampang Province, Thailand. 16S rRNA gene sequence analysis indicated that strain CA3R110 T was a member of the genus Streptomyces...

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Veröffentlicht in:Antonie van Leeuwenhoek 2021-11, Vol.114 (11), p.1889-1898
Hauptverfasser: Nammali, Achararak, Intaraudom, Chakapong, Pittayakhajonwut, Pattama, Suriyachadkun, Chanwit, Tadtong, Sarin, Tanasupawat, Somboon, Thawai, Chitti
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container_issue 11
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container_title Antonie van Leeuwenhoek
container_volume 114
creator Nammali, Achararak
Intaraudom, Chakapong
Pittayakhajonwut, Pattama
Suriyachadkun, Chanwit
Tadtong, Sarin
Tanasupawat, Somboon
Thawai, Chitti
description An aerobic, non-motile, Gram-stain positive actinomycete, designated strain CA3R110 T , was isolated from the surface-sterilised root of Coffea arabica L. collected from Lampang Province, Thailand. 16S rRNA gene sequence analysis indicated that strain CA3R110 T was a member of the genus Streptomyces and showed the closest similarities to Streptomyces buecherae AC541 T (99.2%), followed by Streptomyces rapamycinicus NRRL B-5491 T (99.1%), Streptomyces luteoverticillatus NBRC 3840 T (99.1%), Streptomyces coerulescens NBRC 12758 T (99.1%), and Streptomyces iranensis HM 35 T (99.0%). Strain CA3R110 T contained LL -diaminopimelic acid in cell peptidoglycan, MK-9(H 6 ), and MK-9(H 8 ) as major menaquinone, iso -C 16:0, iso -C 15:0, C 16:0 as major fatty acids. Diphosphatidylglycerol, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositolmannoside were detected in the cell. The chemotaxonomic characteristics possessed the typical properties of the genus Streptomyces . A low digital DNA–DNA hybridization (
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Strain CA3R110 T contained LL -diaminopimelic acid in cell peptidoglycan, MK-9(H 6 ), and MK-9(H 8 ) as major menaquinone, iso -C 16:0, iso -C 15:0, C 16:0 as major fatty acids. Diphosphatidylglycerol, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositolmannoside were detected in the cell. The chemotaxonomic characteristics possessed the typical properties of the genus Streptomyces . A low digital DNA–DNA hybridization (&lt; 55.7%) and average nucleotide identity-blast (ANIb) (&lt; 92.2%) values revealed that strain CA3R110 T could be distinguished from any known Streptomyces species. With the differences in phenotypic and genotypic data, strain CA3R110 T represents a novel species of genus Streptomyces , for which the name Streptomyces endocoffeicus sp. nov. is proposed. 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The type strain is CA3R110 T (= TBRC 11245 T  = NBRC 114296 T ).</description><subject>Biomedical and Life Sciences</subject><subject>Cardiolipin</subject><subject>Chromatography</subject><subject>Coffea arabica</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Endophytes</subject><subject>Fatty acids</subject><subject>Genetic engineering</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Menaquinones</subject><subject>Metabolites</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Morphology</subject><subject>New species</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Pathogens</subject><subject>Peptidoglycans</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phosphatidylinositol</subject><subject>Plant Sciences</subject><subject>rRNA 16S</subject><subject>Science</subject><subject>Sequence analysis</subject><subject>Soil Science &amp; 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Strain CA3R110 T contained LL -diaminopimelic acid in cell peptidoglycan, MK-9(H 6 ), and MK-9(H 8 ) as major menaquinone, iso -C 16:0, iso -C 15:0, C 16:0 as major fatty acids. Diphosphatidylglycerol, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositolmannoside were detected in the cell. The chemotaxonomic characteristics possessed the typical properties of the genus Streptomyces . A low digital DNA–DNA hybridization (&lt; 55.7%) and average nucleotide identity-blast (ANIb) (&lt; 92.2%) values revealed that strain CA3R110 T could be distinguished from any known Streptomyces species. With the differences in phenotypic and genotypic data, strain CA3R110 T represents a novel species of genus Streptomyces , for which the name Streptomyces endocoffeicus sp. nov. is proposed. The type strain is CA3R110 T (= TBRC 11245 T  = NBRC 114296 T ).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s10482-021-01648-x</doi><tpages>10</tpages></addata></record>
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subjects Biomedical and Life Sciences
Cardiolipin
Chromatography
Coffea arabica
Deoxyribonucleic acid
DNA
Endophytes
Fatty acids
Genetic engineering
Genomes
Hybridization
Life Sciences
Medical Microbiology
Menaquinones
Metabolites
Microbiology
Microorganisms
Morphology
New species
Nucleotides
Original Paper
Pathogens
Peptidoglycans
Phosphatidylethanolamine
Phosphatidylglycerol
Phosphatidylinositol
Plant Sciences
rRNA 16S
Science
Sequence analysis
Soil Science & Conservation
Streptomyces
title Streptomyces endocoffeicus sp. nov., an endophytic actinomycete isolated from Coffea arabica (L.)
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