Selecting optimal calibration samples using proximal sensing EM induction and γ-ray spectrometry data: An application to managing lime and magnesium in sugarcane growing soil

Calcium (Ca) and magnesium (Mg) are essential for growth of sugarcane leaves and roots, as well as respiration and nitrogen metabolism, respectively. To assist farmers decide suitable application rates of lime and Mg fertiliser, respectively, the Australian sugarcane industry established the Six-Eas...

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Veröffentlicht in:Journal of environmental management 2021-10, Vol.296, p.113357-113357, Article 113357
Hauptverfasser: Wang, Jie, Zhao, Xueyu, Zhao, Dongxue, Triantafilis, John
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Zhao, Xueyu
Zhao, Dongxue
Triantafilis, John
description Calcium (Ca) and magnesium (Mg) are essential for growth of sugarcane leaves and roots, as well as respiration and nitrogen metabolism, respectively. To assist farmers decide suitable application rates of lime and Mg fertiliser, respectively, the Australian sugarcane industry established the Six-Easy-Steps nutrient management guidelines based on topsoil (0–0.3 m) Ca (cmol(+) kg−1) and Mg (cmol(+) kg−1). Given the heterogeneous nature of soil, digital soil mapping (DSM) methods can be employed to allow for the precise application rate to be determined. In this study, we examine statistical models (i.e., ordinary kriging [OK], linear mixed model [LMM], quantile regression forests [QRF], support vector machine [SVM], and Cubist regression kriging [CubistRK]) to predict topsoil and subsoil (0.6–0.9) Ca and Mg, employing digital data in combination (i.e., proximal sensing electromagnetic induction (EMI) [e.g., 1mPcon, 1mHcon, etc.], gamma-ray [γ-ray] spectrometry [i.e., TC, K, U and Th] and digital elevation model [DEM] derivatives). We also investigate various sampling designs (i.e., spatial coverage [SCS], feature space coverage [FSCS], conditioned Latin hypercube [cLHS] and simple random sampling [SRS]) and calibration sample size (i.e., n = 180, 150, 120, 90, 60 and 30). The predictions are assessed using Lin's concordance correlation coefficient (LCCC) and ratio of performance to interquartile distance (RPIQ) with an independent validation dataset (i.e., n = 40). The best results were for prediction of subsoil Mg, utilising CubistRK (LCCC = 0.82) with the largest calibration sample size (n = 180), followed by LMM (0.79), SVM (0.76), QRF (0.70) and OK (0.65). This was generally the case for topsoil and subsoil Ca. We also conclude that no single sampling design was universally better, and 180 samples were necessary for predicting topsoil Ca and Mg with moderate agreement (0.65 
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To assist farmers decide suitable application rates of lime and Mg fertiliser, respectively, the Australian sugarcane industry established the Six-Easy-Steps nutrient management guidelines based on topsoil (0–0.3 m) Ca (cmol(+) kg−1) and Mg (cmol(+) kg−1). Given the heterogeneous nature of soil, digital soil mapping (DSM) methods can be employed to allow for the precise application rate to be determined. In this study, we examine statistical models (i.e., ordinary kriging [OK], linear mixed model [LMM], quantile regression forests [QRF], support vector machine [SVM], and Cubist regression kriging [CubistRK]) to predict topsoil and subsoil (0.6–0.9) Ca and Mg, employing digital data in combination (i.e., proximal sensing electromagnetic induction (EMI) [e.g., 1mPcon, 1mHcon, etc.], gamma-ray [γ-ray] spectrometry [i.e., TC, K, U and Th] and digital elevation model [DEM] derivatives). We also investigate various sampling designs (i.e., spatial coverage [SCS], feature space coverage [FSCS], conditioned Latin hypercube [cLHS] and simple random sampling [SRS]) and calibration sample size (i.e., n = 180, 150, 120, 90, 60 and 30). The predictions are assessed using Lin's concordance correlation coefficient (LCCC) and ratio of performance to interquartile distance (RPIQ) with an independent validation dataset (i.e., n = 40). The best results were for prediction of subsoil Mg, utilising CubistRK (LCCC = 0.82) with the largest calibration sample size (n = 180), followed by LMM (0.79), SVM (0.76), QRF (0.70) and OK (0.65). This was generally the case for topsoil and subsoil Ca. We also conclude that no single sampling design was universally better, and 180 samples were necessary for predicting topsoil Ca and Mg with moderate agreement (0.65 &lt; LCCC &lt; 0.80). However, with FSCS, a minimum of 120 samples were enough to calibrate a CubistRK model and achieve substantial (LCCC &gt; 0.80) agreement for predicting subsoil Ca and Mg. With respect to soil use and management according to the Six-Easy-Steps, the sandy soil in the north and south require large application rate of lime (3.5 t/ha) and Mg (125 kg/ha), respectively. Conversely, varying amounts of fertiliser rates of lime (2.0, 1.5 and 1 t/ha) and Mg (50 kg/ha) were recommended where Vertosols were previously mapped. •Hybrid model outperforms ML and OK.•No silver bullet is found among sampling designs.•180 calibration samples are required by topsoil Ca and Mg.•FSCS enables 120 samples to predict subsoil Ca and Mg.•DSM achieves a potential ~ 18 % and 86 % decrease in lime and Mg fertilisers cost.</description><identifier>ISSN: 0301-4797</identifier><identifier>EISSN: 1095-8630</identifier><identifier>DOI: 10.1016/j.jenvman.2021.113357</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Digital soil mapping ; Sample size ; Sampling design ; Soil calcium and magnesium ; Soil nutrient management</subject><ispartof>Journal of environmental management, 2021-10, Vol.296, p.113357-113357, Article 113357</ispartof><rights>2021 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c342t-c44b083824804362fa2d724e3cec9053eaf9dda25d1b26db536bdb01b72b46b73</citedby><cites>FETCH-LOGICAL-c342t-c44b083824804362fa2d724e3cec9053eaf9dda25d1b26db536bdb01b72b46b73</cites><orcidid>0000-0003-3115-9762 ; 0000-0003-0021-7181</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0301479721014195$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids></links><search><creatorcontrib>Wang, Jie</creatorcontrib><creatorcontrib>Zhao, Xueyu</creatorcontrib><creatorcontrib>Zhao, Dongxue</creatorcontrib><creatorcontrib>Triantafilis, John</creatorcontrib><title>Selecting optimal calibration samples using proximal sensing EM induction and γ-ray spectrometry data: An application to managing lime and magnesium in sugarcane growing soil</title><title>Journal of environmental management</title><description>Calcium (Ca) and magnesium (Mg) are essential for growth of sugarcane leaves and roots, as well as respiration and nitrogen metabolism, respectively. To assist farmers decide suitable application rates of lime and Mg fertiliser, respectively, the Australian sugarcane industry established the Six-Easy-Steps nutrient management guidelines based on topsoil (0–0.3 m) Ca (cmol(+) kg−1) and Mg (cmol(+) kg−1). Given the heterogeneous nature of soil, digital soil mapping (DSM) methods can be employed to allow for the precise application rate to be determined. In this study, we examine statistical models (i.e., ordinary kriging [OK], linear mixed model [LMM], quantile regression forests [QRF], support vector machine [SVM], and Cubist regression kriging [CubistRK]) to predict topsoil and subsoil (0.6–0.9) Ca and Mg, employing digital data in combination (i.e., proximal sensing electromagnetic induction (EMI) [e.g., 1mPcon, 1mHcon, etc.], gamma-ray [γ-ray] spectrometry [i.e., TC, K, U and Th] and digital elevation model [DEM] derivatives). We also investigate various sampling designs (i.e., spatial coverage [SCS], feature space coverage [FSCS], conditioned Latin hypercube [cLHS] and simple random sampling [SRS]) and calibration sample size (i.e., n = 180, 150, 120, 90, 60 and 30). The predictions are assessed using Lin's concordance correlation coefficient (LCCC) and ratio of performance to interquartile distance (RPIQ) with an independent validation dataset (i.e., n = 40). The best results were for prediction of subsoil Mg, utilising CubistRK (LCCC = 0.82) with the largest calibration sample size (n = 180), followed by LMM (0.79), SVM (0.76), QRF (0.70) and OK (0.65). This was generally the case for topsoil and subsoil Ca. We also conclude that no single sampling design was universally better, and 180 samples were necessary for predicting topsoil Ca and Mg with moderate agreement (0.65 &lt; LCCC &lt; 0.80). However, with FSCS, a minimum of 120 samples were enough to calibrate a CubistRK model and achieve substantial (LCCC &gt; 0.80) agreement for predicting subsoil Ca and Mg. With respect to soil use and management according to the Six-Easy-Steps, the sandy soil in the north and south require large application rate of lime (3.5 t/ha) and Mg (125 kg/ha), respectively. Conversely, varying amounts of fertiliser rates of lime (2.0, 1.5 and 1 t/ha) and Mg (50 kg/ha) were recommended where Vertosols were previously mapped. •Hybrid model outperforms ML and OK.•No silver bullet is found among sampling designs.•180 calibration samples are required by topsoil Ca and Mg.•FSCS enables 120 samples to predict subsoil Ca and Mg.•DSM achieves a potential ~ 18 % and 86 % decrease in lime and Mg fertilisers cost.</description><subject>Digital soil mapping</subject><subject>Sample size</subject><subject>Sampling design</subject><subject>Soil calcium and magnesium</subject><subject>Soil nutrient management</subject><issn>0301-4797</issn><issn>1095-8630</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNqFkctu1DAUhi1EJYaWR0Dykk0G33Jjg6qqBaQiFpS15cuZyCPHDnZSmKdiwXv0mXAm3bOyZH3_p3POj9BbSvaU0Ob9cX-E8DiqsGeE0T2lnNftC7SjpK-rruHkJdoRTmgl2r59hV7nfCSEcEbbHfrzHTyY2YUBx2l2o_LYKO90UrOLAWc1Th4yXvJKTCn-PiMZwvnj9it2wS7mzKpg8dPfKqkTzlNxpjjCnE7Yqll9wNcFmCbvzCaeIy4Dq2G1eDfCOT2qIUB2y1isOC-DSkYFwEOKv1YuR-ev0MVB-Qxvnt9L9OPu9uHmc3X_7dOXm-v7ynDB5soIoUnHOyY6InjDDorZlgngBkxPag7q0FurWG2pZo3VNW-01YTqlmnR6JZfonebt-z8c4E8y9FlA96XgeKSJavrTtSE8b6g9YaaFHNOcJBTKldKJ0mJXAuSR_lckFwLkltBJfdxy0HZ49FBktk4CAasS-V80kb3H8M_y2mhgA</recordid><startdate>20211015</startdate><enddate>20211015</enddate><creator>Wang, Jie</creator><creator>Zhao, Xueyu</creator><creator>Zhao, Dongxue</creator><creator>Triantafilis, John</creator><general>Elsevier Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3115-9762</orcidid><orcidid>https://orcid.org/0000-0003-0021-7181</orcidid></search><sort><creationdate>20211015</creationdate><title>Selecting optimal calibration samples using proximal sensing EM induction and γ-ray spectrometry data: An application to managing lime and magnesium in sugarcane growing soil</title><author>Wang, Jie ; Zhao, Xueyu ; Zhao, Dongxue ; Triantafilis, John</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c342t-c44b083824804362fa2d724e3cec9053eaf9dda25d1b26db536bdb01b72b46b73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Digital soil mapping</topic><topic>Sample size</topic><topic>Sampling design</topic><topic>Soil calcium and magnesium</topic><topic>Soil nutrient management</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jie</creatorcontrib><creatorcontrib>Zhao, Xueyu</creatorcontrib><creatorcontrib>Zhao, Dongxue</creatorcontrib><creatorcontrib>Triantafilis, John</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of environmental management</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jie</au><au>Zhao, Xueyu</au><au>Zhao, Dongxue</au><au>Triantafilis, John</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Selecting optimal calibration samples using proximal sensing EM induction and γ-ray spectrometry data: An application to managing lime and magnesium in sugarcane growing soil</atitle><jtitle>Journal of environmental management</jtitle><date>2021-10-15</date><risdate>2021</risdate><volume>296</volume><spage>113357</spage><epage>113357</epage><pages>113357-113357</pages><artnum>113357</artnum><issn>0301-4797</issn><eissn>1095-8630</eissn><abstract>Calcium (Ca) and magnesium (Mg) are essential for growth of sugarcane leaves and roots, as well as respiration and nitrogen metabolism, respectively. To assist farmers decide suitable application rates of lime and Mg fertiliser, respectively, the Australian sugarcane industry established the Six-Easy-Steps nutrient management guidelines based on topsoil (0–0.3 m) Ca (cmol(+) kg−1) and Mg (cmol(+) kg−1). Given the heterogeneous nature of soil, digital soil mapping (DSM) methods can be employed to allow for the precise application rate to be determined. In this study, we examine statistical models (i.e., ordinary kriging [OK], linear mixed model [LMM], quantile regression forests [QRF], support vector machine [SVM], and Cubist regression kriging [CubistRK]) to predict topsoil and subsoil (0.6–0.9) Ca and Mg, employing digital data in combination (i.e., proximal sensing electromagnetic induction (EMI) [e.g., 1mPcon, 1mHcon, etc.], gamma-ray [γ-ray] spectrometry [i.e., TC, K, U and Th] and digital elevation model [DEM] derivatives). We also investigate various sampling designs (i.e., spatial coverage [SCS], feature space coverage [FSCS], conditioned Latin hypercube [cLHS] and simple random sampling [SRS]) and calibration sample size (i.e., n = 180, 150, 120, 90, 60 and 30). The predictions are assessed using Lin's concordance correlation coefficient (LCCC) and ratio of performance to interquartile distance (RPIQ) with an independent validation dataset (i.e., n = 40). The best results were for prediction of subsoil Mg, utilising CubistRK (LCCC = 0.82) with the largest calibration sample size (n = 180), followed by LMM (0.79), SVM (0.76), QRF (0.70) and OK (0.65). This was generally the case for topsoil and subsoil Ca. We also conclude that no single sampling design was universally better, and 180 samples were necessary for predicting topsoil Ca and Mg with moderate agreement (0.65 &lt; LCCC &lt; 0.80). However, with FSCS, a minimum of 120 samples were enough to calibrate a CubistRK model and achieve substantial (LCCC &gt; 0.80) agreement for predicting subsoil Ca and Mg. With respect to soil use and management according to the Six-Easy-Steps, the sandy soil in the north and south require large application rate of lime (3.5 t/ha) and Mg (125 kg/ha), respectively. Conversely, varying amounts of fertiliser rates of lime (2.0, 1.5 and 1 t/ha) and Mg (50 kg/ha) were recommended where Vertosols were previously mapped. •Hybrid model outperforms ML and OK.•No silver bullet is found among sampling designs.•180 calibration samples are required by topsoil Ca and Mg.•FSCS enables 120 samples to predict subsoil Ca and Mg.•DSM achieves a potential ~ 18 % and 86 % decrease in lime and Mg fertilisers cost.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.jenvman.2021.113357</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-3115-9762</orcidid><orcidid>https://orcid.org/0000-0003-0021-7181</orcidid></addata></record>
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subjects Digital soil mapping
Sample size
Sampling design
Soil calcium and magnesium
Soil nutrient management
title Selecting optimal calibration samples using proximal sensing EM induction and γ-ray spectrometry data: An application to managing lime and magnesium in sugarcane growing soil
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