Genotyping and In Vitro Antifungal Susceptibility Profile of Neoscytalidium Species Isolates from Respiratory Tract
The fungus genus Neoscytalidium is mainly distributed in (sub) tropical regions of the world and has been essentially considered as a phytopathogen. There are however several reports of human infection caused by Neoscytalidium spp. through direct or indirect contact with contaminated plants or soil....
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| Veröffentlicht in: | Mycopathologia (1975) 2021-12, Vol.186 (6), p.833-845 |
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| creator | Heidari, Somaye Gheisari, Maryam Abastabar, Mahdi Pourabdollah, Mihan Mirenayat, Maryam Sadat Basharzad, Niloofar Seifi, Sharareh Tavakoli, Mahin Jafarzadeh, Jalal Ansari, Saham Haghani, Iman Seyedmousavi, Seyedmojtaba Alastruey-Izquierdo, Ana Hedayati, Mohammad T. |
| description | The fungus genus
Neoscytalidium
is mainly distributed in (sub) tropical regions of the world and has been essentially considered as a phytopathogen. There are however several reports of human infection caused by
Neoscytalidium
spp. through direct or indirect contact with contaminated plants or soil. Reliable and accurate identification to species level is critical for implementing proper therapeutic strategies. In the present study we investigated the genotypes and in vitro antifungal susceptibility patterns of
Neoscytalidium
species identified from respiratory tracts of patients with various underlying diseases. The identity and diversity of the isolates were done using PCR and sequencing of five different loci (the ITS region, D1/D2 domains of 28S rRNA gene, and part of the beta tubulin, elongation factor 1α and chitin synthase genes). The in-vitro antifungal susceptibility was also performed using the Clinical and Laboratory Standards Institute (CLSI) M38-Ed3-2017 guidelines. Overall, 13 isolates were identified as
Neoscytalidium
species (eight
N. dimidiatum
and five
N. novaehollandiae
). Two sequence types (STs) were identified by the alignment of 1846 combined base pairs among 13 clinical isolates. All isolates classified as
N. dimidiatum
were clustered in ST6 (61.5%) and those of
N. novaehollandiae
were in ST7 (38.5%). Luliconazole was the most active antifungal in vitro against species. This is the first report of
N. novaehollandiae
isolation from respiratory tracts samples. Further study from other regions of the world with a larger set of clinical specimens is required to provide additional insight into diversity of
Neoscytalidium
species. |
| doi_str_mv | 10.1007/s11046-021-00545-1 |
| format | Article |
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Neoscytalidium
is mainly distributed in (sub) tropical regions of the world and has been essentially considered as a phytopathogen. There are however several reports of human infection caused by
Neoscytalidium
spp. through direct or indirect contact with contaminated plants or soil. Reliable and accurate identification to species level is critical for implementing proper therapeutic strategies. In the present study we investigated the genotypes and in vitro antifungal susceptibility patterns of
Neoscytalidium
species identified from respiratory tracts of patients with various underlying diseases. The identity and diversity of the isolates were done using PCR and sequencing of five different loci (the ITS region, D1/D2 domains of 28S rRNA gene, and part of the beta tubulin, elongation factor 1α and chitin synthase genes). The in-vitro antifungal susceptibility was also performed using the Clinical and Laboratory Standards Institute (CLSI) M38-Ed3-2017 guidelines. Overall, 13 isolates were identified as
Neoscytalidium
species (eight
N. dimidiatum
and five
N. novaehollandiae
). Two sequence types (STs) were identified by the alignment of 1846 combined base pairs among 13 clinical isolates. All isolates classified as
N. dimidiatum
were clustered in ST6 (61.5%) and those of
N. novaehollandiae
were in ST7 (38.5%). Luliconazole was the most active antifungal in vitro against species. This is the first report of
N. novaehollandiae
isolation from respiratory tracts samples. Further study from other regions of the world with a larger set of clinical specimens is required to provide additional insight into diversity of
Neoscytalidium
species.</description><identifier>ISSN: 0301-486X</identifier><identifier>EISSN: 1573-0832</identifier><identifier>DOI: 10.1007/s11046-021-00545-1</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Biomedical and Life Sciences ; Chitin ; Chitin synthase ; Clinical isolates ; Eukaryotic Microbiology ; Fungal infections ; Fungi ; Genotypes ; Genotyping ; Health aspects ; Infection ; Laboratories ; Life Sciences ; Lung diseases ; Medical Microbiology ; Medicine ; Microbial Ecology ; Microbiology ; Original Article ; Parasitology ; Pathogens ; Plant Sciences ; Research centers ; Respiration ; Respiratory diseases ; Respiratory tract ; RNA ; rRNA 28S ; Soil pollution ; Species ; Taxonomy ; Tropical environment ; Tuberculosis ; Tubulin</subject><ispartof>Mycopathologia (1975), 2021-12, Vol.186 (6), p.833-845</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021</rights><rights>COPYRIGHT 2021 Springer</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c453t-638c6b4e46595a4ccc022e69c1c6967a05d519375c9b073af1ec7f6f762c985b3</citedby><cites>FETCH-LOGICAL-c453t-638c6b4e46595a4ccc022e69c1c6967a05d519375c9b073af1ec7f6f762c985b3</cites><orcidid>0000-0001-6415-4648</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11046-021-00545-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11046-021-00545-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids></links><search><creatorcontrib>Heidari, Somaye</creatorcontrib><creatorcontrib>Gheisari, Maryam</creatorcontrib><creatorcontrib>Abastabar, Mahdi</creatorcontrib><creatorcontrib>Pourabdollah, Mihan</creatorcontrib><creatorcontrib>Mirenayat, Maryam Sadat</creatorcontrib><creatorcontrib>Basharzad, Niloofar</creatorcontrib><creatorcontrib>Seifi, Sharareh</creatorcontrib><creatorcontrib>Tavakoli, Mahin</creatorcontrib><creatorcontrib>Jafarzadeh, Jalal</creatorcontrib><creatorcontrib>Ansari, Saham</creatorcontrib><creatorcontrib>Haghani, Iman</creatorcontrib><creatorcontrib>Seyedmousavi, Seyedmojtaba</creatorcontrib><creatorcontrib>Alastruey-Izquierdo, Ana</creatorcontrib><creatorcontrib>Hedayati, Mohammad T.</creatorcontrib><title>Genotyping and In Vitro Antifungal Susceptibility Profile of Neoscytalidium Species Isolates from Respiratory Tract</title><title>Mycopathologia (1975)</title><addtitle>Mycopathologia</addtitle><description>The fungus genus
Neoscytalidium
is mainly distributed in (sub) tropical regions of the world and has been essentially considered as a phytopathogen. There are however several reports of human infection caused by
Neoscytalidium
spp. through direct or indirect contact with contaminated plants or soil. Reliable and accurate identification to species level is critical for implementing proper therapeutic strategies. In the present study we investigated the genotypes and in vitro antifungal susceptibility patterns of
Neoscytalidium
species identified from respiratory tracts of patients with various underlying diseases. The identity and diversity of the isolates were done using PCR and sequencing of five different loci (the ITS region, D1/D2 domains of 28S rRNA gene, and part of the beta tubulin, elongation factor 1α and chitin synthase genes). The in-vitro antifungal susceptibility was also performed using the Clinical and Laboratory Standards Institute (CLSI) M38-Ed3-2017 guidelines. Overall, 13 isolates were identified as
Neoscytalidium
species (eight
N. dimidiatum
and five
N. novaehollandiae
). Two sequence types (STs) were identified by the alignment of 1846 combined base pairs among 13 clinical isolates. All isolates classified as
N. dimidiatum
were clustered in ST6 (61.5%) and those of
N. novaehollandiae
were in ST7 (38.5%). Luliconazole was the most active antifungal in vitro against species. This is the first report of
N. novaehollandiae
isolation from respiratory tracts samples. Further study from other regions of the world with a larger set of clinical specimens is required to provide additional insight into diversity of
Neoscytalidium
species.</description><subject>Biomedical and Life Sciences</subject><subject>Chitin</subject><subject>Chitin synthase</subject><subject>Clinical isolates</subject><subject>Eukaryotic Microbiology</subject><subject>Fungal infections</subject><subject>Fungi</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Health aspects</subject><subject>Infection</subject><subject>Laboratories</subject><subject>Life Sciences</subject><subject>Lung diseases</subject><subject>Medical Microbiology</subject><subject>Medicine</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Original Article</subject><subject>Parasitology</subject><subject>Pathogens</subject><subject>Plant Sciences</subject><subject>Research centers</subject><subject>Respiration</subject><subject>Respiratory diseases</subject><subject>Respiratory tract</subject><subject>RNA</subject><subject>rRNA 28S</subject><subject>Soil pollution</subject><subject>Species</subject><subject>Taxonomy</subject><subject>Tropical 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Abastabar, Mahdi ; Pourabdollah, Mihan ; Mirenayat, Maryam Sadat ; Basharzad, Niloofar ; Seifi, Sharareh ; Tavakoli, Mahin ; Jafarzadeh, Jalal ; Ansari, Saham ; Haghani, Iman ; Seyedmousavi, Seyedmojtaba ; Alastruey-Izquierdo, Ana ; Hedayati, Mohammad T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c453t-638c6b4e46595a4ccc022e69c1c6967a05d519375c9b073af1ec7f6f762c985b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Biomedical and Life Sciences</topic><topic>Chitin</topic><topic>Chitin synthase</topic><topic>Clinical isolates</topic><topic>Eukaryotic Microbiology</topic><topic>Fungal infections</topic><topic>Fungi</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Health aspects</topic><topic>Infection</topic><topic>Laboratories</topic><topic>Life Sciences</topic><topic>Lung diseases</topic><topic>Medical 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T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genotyping and In Vitro Antifungal Susceptibility Profile of Neoscytalidium Species Isolates from Respiratory Tract</atitle><jtitle>Mycopathologia (1975)</jtitle><stitle>Mycopathologia</stitle><date>2021-12-01</date><risdate>2021</risdate><volume>186</volume><issue>6</issue><spage>833</spage><epage>845</epage><pages>833-845</pages><issn>0301-486X</issn><eissn>1573-0832</eissn><abstract>The fungus genus
Neoscytalidium
is mainly distributed in (sub) tropical regions of the world and has been essentially considered as a phytopathogen. There are however several reports of human infection caused by
Neoscytalidium
spp. through direct or indirect contact with contaminated plants or soil. Reliable and accurate identification to species level is critical for implementing proper therapeutic strategies. In the present study we investigated the genotypes and in vitro antifungal susceptibility patterns of
Neoscytalidium
species identified from respiratory tracts of patients with various underlying diseases. The identity and diversity of the isolates were done using PCR and sequencing of five different loci (the ITS region, D1/D2 domains of 28S rRNA gene, and part of the beta tubulin, elongation factor 1α and chitin synthase genes). The in-vitro antifungal susceptibility was also performed using the Clinical and Laboratory Standards Institute (CLSI) M38-Ed3-2017 guidelines. Overall, 13 isolates were identified as
Neoscytalidium
species (eight
N. dimidiatum
and five
N. novaehollandiae
). Two sequence types (STs) were identified by the alignment of 1846 combined base pairs among 13 clinical isolates. All isolates classified as
N. dimidiatum
were clustered in ST6 (61.5%) and those of
N. novaehollandiae
were in ST7 (38.5%). Luliconazole was the most active antifungal in vitro against species. This is the first report of
N. novaehollandiae
isolation from respiratory tracts samples. Further study from other regions of the world with a larger set of clinical specimens is required to provide additional insight into diversity of
Neoscytalidium
species.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s11046-021-00545-1</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-6415-4648</orcidid></addata></record> |
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| source | SpringerLink Journals - AutoHoldings |
| subjects | Biomedical and Life Sciences Chitin Chitin synthase Clinical isolates Eukaryotic Microbiology Fungal infections Fungi Genotypes Genotyping Health aspects Infection Laboratories Life Sciences Lung diseases Medical Microbiology Medicine Microbial Ecology Microbiology Original Article Parasitology Pathogens Plant Sciences Research centers Respiration Respiratory diseases Respiratory tract RNA rRNA 28S Soil pollution Species Taxonomy Tropical environment Tuberculosis Tubulin |
| title | Genotyping and In Vitro Antifungal Susceptibility Profile of Neoscytalidium Species Isolates from Respiratory Tract |
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