Prediction and interpretation of rare missense variant in OTOG associated with hearing loss
OTOG encodes for otogelin, a component of the tectorial membrane. This gene is associated with nonprogressive mild-to-moderate hearing loss. However, no studies have yet identified the association between OTOG variation and severe-to-profound hearing loss. Therefore, to address this issue, a family-...
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Veröffentlicht in: | Genomics (San Diego, Calif.) Calif.), 2021-07, Vol.113 (4), p.2793-2799 |
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description | OTOG encodes for otogelin, a component of the tectorial membrane. This gene is associated with nonprogressive mild-to-moderate hearing loss. However, no studies have yet identified the association between OTOG variation and severe-to-profound hearing loss. Therefore, to address this issue, a family-based whole-exome sequencing strategy (WES) was carried out. Two unrelated Iranian families with non-syndromic hearing loss were identified, and WES was conducted on one selected candidate from each family. As a result, a rare homozygous missense variant, OTOG (c.C2383T:p.R795C), was detected in both of the subjected probands, and segregation analysis confirmed the c.C2383T variant in seven cases of severe-to-profound hearing loss. Additionally, the results from the protein modeling demonstrated that the altered position of a few disulfide bonds in the TIL domain may have a deleterious impact on protein stability and normal functionality. In conclusion, it seems that the homozygosity of the OTOG c.C2383T mutation sheds light on hearing loss pathobiology. Nevertheless, further studies are required to unravel the precise function of OTOG mutation, which is potentially associated with severe-to-profound hearing loss.
•Hearing Loss is one of the most common deficiencies of the neural-sensory system.•Family-based whole-exome sequencing was carried out to address genetic causes.•A rare homozygous missense variant, OTOG (c.C2383T:p.R795C) was detected.•Protein instability due to the altered position of disulfide bonds in the TIL domain. |
doi_str_mv | 10.1016/j.ygeno.2021.06.012 |
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•Hearing Loss is one of the most common deficiencies of the neural-sensory system.•Family-based whole-exome sequencing was carried out to address genetic causes.•A rare homozygous missense variant, OTOG (c.C2383T:p.R795C) was detected.•Protein instability due to the altered position of disulfide bonds in the TIL domain.</description><identifier>ISSN: 0888-7543</identifier><identifier>EISSN: 1089-8646</identifier><identifier>DOI: 10.1016/j.ygeno.2021.06.012</identifier><identifier>PMID: 34118384</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Deafness - genetics ; domain ; family ; genes ; genomics ; Hearing Loss - genetics ; homozygosity ; Homozygote ; Homozygous OTOG ; Humans ; Inherited non-syndromic hearing loss ; Iran ; Membrane Glycoproteins - genetics ; Molecular diagnosis ; Mutation ; Mutation, Missense ; Next-generation sequencing ; Pedigree ; prediction ; Protein modeling ; Whole Exome Sequencing - methods</subject><ispartof>Genomics (San Diego, Calif.), 2021-07, Vol.113 (4), p.2793-2799</ispartof><rights>2021</rights><rights>Copyright © 2021. Published by Elsevier Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c437t-2fb8f93b4b5a1dbc1e0f0c36d6eed13f8512647d50bfbd19def36b0c2b1599bc3</citedby><cites>FETCH-LOGICAL-c437t-2fb8f93b4b5a1dbc1e0f0c36d6eed13f8512647d50bfbd19def36b0c2b1599bc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ygeno.2021.06.012$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34118384$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Askari, Masomeh</creatorcontrib><creatorcontrib>Moradi, Zahra</creatorcontrib><creatorcontrib>Mohammadi, Mahsa</creatorcontrib><creatorcontrib>Lagzian, Milad</creatorcontrib><creatorcontrib>Asgharzade, Samira</creatorcontrib><title>Prediction and interpretation of rare missense variant in OTOG associated with hearing loss</title><title>Genomics (San Diego, Calif.)</title><addtitle>Genomics</addtitle><description>OTOG encodes for otogelin, a component of the tectorial membrane. This gene is associated with nonprogressive mild-to-moderate hearing loss. However, no studies have yet identified the association between OTOG variation and severe-to-profound hearing loss. Therefore, to address this issue, a family-based whole-exome sequencing strategy (WES) was carried out. Two unrelated Iranian families with non-syndromic hearing loss were identified, and WES was conducted on one selected candidate from each family. As a result, a rare homozygous missense variant, OTOG (c.C2383T:p.R795C), was detected in both of the subjected probands, and segregation analysis confirmed the c.C2383T variant in seven cases of severe-to-profound hearing loss. Additionally, the results from the protein modeling demonstrated that the altered position of a few disulfide bonds in the TIL domain may have a deleterious impact on protein stability and normal functionality. In conclusion, it seems that the homozygosity of the OTOG c.C2383T mutation sheds light on hearing loss pathobiology. Nevertheless, further studies are required to unravel the precise function of OTOG mutation, which is potentially associated with severe-to-profound hearing loss.
•Hearing Loss is one of the most common deficiencies of the neural-sensory system.•Family-based whole-exome sequencing was carried out to address genetic causes.•A rare homozygous missense variant, OTOG (c.C2383T:p.R795C) was detected.•Protein instability due to the altered position of disulfide bonds in the TIL domain.</description><subject>Deafness - genetics</subject><subject>domain</subject><subject>family</subject><subject>genes</subject><subject>genomics</subject><subject>Hearing Loss - genetics</subject><subject>homozygosity</subject><subject>Homozygote</subject><subject>Homozygous OTOG</subject><subject>Humans</subject><subject>Inherited non-syndromic hearing loss</subject><subject>Iran</subject><subject>Membrane Glycoproteins - genetics</subject><subject>Molecular diagnosis</subject><subject>Mutation</subject><subject>Mutation, Missense</subject><subject>Next-generation sequencing</subject><subject>Pedigree</subject><subject>prediction</subject><subject>Protein modeling</subject><subject>Whole Exome Sequencing - methods</subject><issn>0888-7543</issn><issn>1089-8646</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkT1PHDEQhq0oERwfvyBS5DLNLuP1rs9bUCCUECSkoyAVheWPMfh05z1sH4h_H8MRSkRlafTMvJ55CPnOoGXAxMmyfb7DOLUddKwF0QLrvpAZAzk2UvTiK5mBlLKZDz3fJwc5LwFg5LLbI_u8Z0xy2c_I7XVCF2wJU6Q6OhpiwbRJWPRrafI06YR0HXLGmJE-6hR0LJWji5vFBdU5Tzbogo4-hXJP77EC8Y6uppyPyDevVxmP395D8vf3r5vzP83V4uLy_OyqsT2fl6bzRvqRm94MmjljGYIHy4UTiI5xLwfWiX7uBjDeODY69FwYsJ1hwzgayw_Jz93cTZoetpiLqt-1uFrpiNM2q24Y2CgHPodPoD3UOMlZRfkOtanuktCrTQprnZ4VA_UiQC3VqwD1IkCBUFVA7frxFrA1a3TvPf8vXoHTHYD1Io8Bk8o2YLTVQkJblJvChwH_AEgqmRc</recordid><startdate>202107</startdate><enddate>202107</enddate><creator>Askari, Masomeh</creator><creator>Moradi, Zahra</creator><creator>Mohammadi, Mahsa</creator><creator>Lagzian, Milad</creator><creator>Asgharzade, Samira</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>202107</creationdate><title>Prediction and interpretation of rare missense variant in OTOG associated with hearing loss</title><author>Askari, Masomeh ; Moradi, Zahra ; Mohammadi, Mahsa ; Lagzian, Milad ; Asgharzade, Samira</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c437t-2fb8f93b4b5a1dbc1e0f0c36d6eed13f8512647d50bfbd19def36b0c2b1599bc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Deafness - genetics</topic><topic>domain</topic><topic>family</topic><topic>genes</topic><topic>genomics</topic><topic>Hearing Loss - genetics</topic><topic>homozygosity</topic><topic>Homozygote</topic><topic>Homozygous OTOG</topic><topic>Humans</topic><topic>Inherited non-syndromic hearing loss</topic><topic>Iran</topic><topic>Membrane Glycoproteins - genetics</topic><topic>Molecular diagnosis</topic><topic>Mutation</topic><topic>Mutation, Missense</topic><topic>Next-generation sequencing</topic><topic>Pedigree</topic><topic>prediction</topic><topic>Protein modeling</topic><topic>Whole Exome Sequencing - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Askari, Masomeh</creatorcontrib><creatorcontrib>Moradi, Zahra</creatorcontrib><creatorcontrib>Mohammadi, Mahsa</creatorcontrib><creatorcontrib>Lagzian, Milad</creatorcontrib><creatorcontrib>Asgharzade, Samira</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Genomics (San Diego, Calif.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Askari, Masomeh</au><au>Moradi, Zahra</au><au>Mohammadi, Mahsa</au><au>Lagzian, Milad</au><au>Asgharzade, Samira</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Prediction and interpretation of rare missense variant in OTOG associated with hearing loss</atitle><jtitle>Genomics (San Diego, Calif.)</jtitle><addtitle>Genomics</addtitle><date>2021-07</date><risdate>2021</risdate><volume>113</volume><issue>4</issue><spage>2793</spage><epage>2799</epage><pages>2793-2799</pages><issn>0888-7543</issn><eissn>1089-8646</eissn><abstract>OTOG encodes for otogelin, a component of the tectorial membrane. This gene is associated with nonprogressive mild-to-moderate hearing loss. However, no studies have yet identified the association between OTOG variation and severe-to-profound hearing loss. Therefore, to address this issue, a family-based whole-exome sequencing strategy (WES) was carried out. Two unrelated Iranian families with non-syndromic hearing loss were identified, and WES was conducted on one selected candidate from each family. As a result, a rare homozygous missense variant, OTOG (c.C2383T:p.R795C), was detected in both of the subjected probands, and segregation analysis confirmed the c.C2383T variant in seven cases of severe-to-profound hearing loss. Additionally, the results from the protein modeling demonstrated that the altered position of a few disulfide bonds in the TIL domain may have a deleterious impact on protein stability and normal functionality. In conclusion, it seems that the homozygosity of the OTOG c.C2383T mutation sheds light on hearing loss pathobiology. Nevertheless, further studies are required to unravel the precise function of OTOG mutation, which is potentially associated with severe-to-profound hearing loss.
•Hearing Loss is one of the most common deficiencies of the neural-sensory system.•Family-based whole-exome sequencing was carried out to address genetic causes.•A rare homozygous missense variant, OTOG (c.C2383T:p.R795C) was detected.•Protein instability due to the altered position of disulfide bonds in the TIL domain.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>34118384</pmid><doi>10.1016/j.ygeno.2021.06.012</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Deafness - genetics domain family genes genomics Hearing Loss - genetics homozygosity Homozygote Homozygous OTOG Humans Inherited non-syndromic hearing loss Iran Membrane Glycoproteins - genetics Molecular diagnosis Mutation Mutation, Missense Next-generation sequencing Pedigree prediction Protein modeling Whole Exome Sequencing - methods |
title | Prediction and interpretation of rare missense variant in OTOG associated with hearing loss |
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