Sequence and phylogenetic analysis of the mitochondrial genome for the East Asian common octopus, Octopus sinensis (Octopodidae: Octopoda)
The complete mitochondrial genome of the East Asian common octopus (Octopus sinensis) was determined and analyzed in this work. The circular mitogenome of O. sinensis is 15,737 bp in length with 21.53% GC content, which contains two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), 13 prot...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-08, Vol.6 (8), p.2120-2122 |
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| creator | Li, Fenghui Liu, Yuyan Qin, Bo Bian, Li Ge, Jianlong Chang, Qing Liu, Hui Chen, Siqing |
| description | The complete mitochondrial genome of the East Asian common octopus (Octopus sinensis) was determined and analyzed in this work. The circular mitogenome of O. sinensis is 15,737 bp in length with 21.53% GC content, which contains two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs) and a non-coding region (D-loop). The analysis of the SNPs revealed 4 conservative SNPs for COI gene of O. sinensis compared with Octopus vulgaris. Phylogenetic analysis suggested that O. sinensis is closely related to O. vulgaris. This sequence data would play an important role in the investigation of phylogenetic relationship and taxonomy of the class Cephalopoda. |
| doi_str_mv | 10.1080/23802359.2021.1944360 |
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The circular mitogenome of O. sinensis is 15,737 bp in length with 21.53% GC content, which contains two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs) and a non-coding region (D-loop). The analysis of the SNPs revealed 4 conservative SNPs for COI gene of O. sinensis compared with Octopus vulgaris. Phylogenetic analysis suggested that O. sinensis is closely related to O. vulgaris. This sequence data would play an important role in the investigation of phylogenetic relationship and taxonomy of the class Cephalopoda.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2021.1944360</identifier><identifier>PMID: 34250235</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>COI protein ; Genomes ; Mitochondria ; mitochondrion ; Mitogenome Announcement ; mtDNA ; Nucleotide sequence ; Octopus sinensis ; Octopus vulgaris ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; rRNA ; Single-nucleotide polymorphism ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-08, Vol.6 (8), p.2120-2122</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Part B. Resources</title><description>The complete mitochondrial genome of the East Asian common octopus (Octopus sinensis) was determined and analyzed in this work. The circular mitogenome of O. sinensis is 15,737 bp in length with 21.53% GC content, which contains two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs) and a non-coding region (D-loop). The analysis of the SNPs revealed 4 conservative SNPs for COI gene of O. sinensis compared with Octopus vulgaris. Phylogenetic analysis suggested that O. sinensis is closely related to O. vulgaris. This sequence data would play an important role in the investigation of phylogenetic relationship and taxonomy of the class Cephalopoda.</description><subject>COI protein</subject><subject>Genomes</subject><subject>Mitochondria</subject><subject>mitochondrion</subject><subject>Mitogenome Announcement</subject><subject>mtDNA</subject><subject>Nucleotide sequence</subject><subject>Octopus sinensis</subject><subject>Octopus vulgaris</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Single-nucleotide polymorphism</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9ks1u1DAUhSMEolXpIyBZYlMkZvBPHMcsUKuqhUqVugDW1vVPZjxK7MHOgOYVeOrGkwFRFqx8fe7xZ8v3VNVrgpcEt_g9ZS2mjMslxZQsiaxr1uBn1WnRF6Xx_K_6pDrPeYMxJg0TQoqX1QmrKS-A0-rXF_d954JxCIJF2_W-jysX3OjNJEC_zz6j2KFx7dDgx2jWMdjkoUeTKw4OdTEdmjeQR3SVPQRk4jDEgKIZ43aX36GHuUDZBxcK7-KgROstuA_ouIG3r6oXHfTZnR_Xs-rb7c3X68-L-4dPd9dX9wvDmRwXpBbccod14wStNbOatMSaltlWSkeN1KxxRgpjtdVMdC0lrbEWtGWN5Bazs-pu5toIG7VNfoC0VxG8OggxrRSk6QN6pwToideBBUtr0RAgjBJdMwBmGkYK6-PM2u704KxxYUzQP4E-7QS_Vqv4Q7W05rgVE-DiCEhxGkQe1eCzcX0PwcVdVpRzXMZWl7ve_GPdxF2ahlRcDcWymV18dpkUc06u-_MYglUJj_odHlXCo47hmc5dzud8mGY6wM-YeqtGmAKRugTB-KzY_xGPTuzMYw</recordid><startdate>20210803</startdate><enddate>20210803</enddate><creator>Li, Fenghui</creator><creator>Liu, Yuyan</creator><creator>Qin, Bo</creator><creator>Bian, Li</creator><creator>Ge, Jianlong</creator><creator>Chang, Qing</creator><creator>Liu, Hui</creator><creator>Chen, Siqing</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20210803</creationdate><title>Sequence and phylogenetic analysis of the mitochondrial genome for the East Asian common octopus, Octopus sinensis (Octopodidae: Octopoda)</title><author>Li, Fenghui ; 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The circular mitogenome of O. sinensis is 15,737 bp in length with 21.53% GC content, which contains two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), 13 protein-coding genes (PCGs) and a non-coding region (D-loop). The analysis of the SNPs revealed 4 conservative SNPs for COI gene of O. sinensis compared with Octopus vulgaris. Phylogenetic analysis suggested that O. sinensis is closely related to O. vulgaris. This sequence data would play an important role in the investigation of phylogenetic relationship and taxonomy of the class Cephalopoda.</abstract><cop>Abingdon</cop><pub>Taylor & Francis</pub><pmid>34250235</pmid><doi>10.1080/23802359.2021.1944360</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | COI protein Genomes Mitochondria mitochondrion Mitogenome Announcement mtDNA Nucleotide sequence Octopus sinensis Octopus vulgaris phylogenetic analysis Phylogenetics Phylogeny rRNA Single-nucleotide polymorphism Transfer RNA |
| title | Sequence and phylogenetic analysis of the mitochondrial genome for the East Asian common octopus, Octopus sinensis (Octopodidae: Octopoda) |
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