Frequency of frontotemporal dementia-related gene variants in Turkey
•GRN mutation frequency is higher than the other FTD related genes in Turkish cases•VCP, TARDBP, CHMP2B and FUS can be observed in FTD cases based on clinical evidence•FTD-related genes sequencing is useful in determining genetic etiology, new variants Just as its clinical heterogeneity, genetic bas...
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creator | Artan, Sevilhan Erzurumluoglu Gokalp, Ebru Samanci, Bedia Ozbabalik Adapinar, Demet Bas, Hasan Tepgec, Fatih Qomi Ekenel, Emilia Cilingir, Oguz Bilgic, Basar Gurvit, Hakan Hanagasi, Hasmet Ayhan Kocagil, Sinem Durak Aras, Beyhan Uyguner, Oya Emre, Murat |
description | •GRN mutation frequency is higher than the other FTD related genes in Turkish cases•VCP, TARDBP, CHMP2B and FUS can be observed in FTD cases based on clinical evidence•FTD-related genes sequencing is useful in determining genetic etiology, new variants
Just as its clinical heterogeneity, genetic basis of Frontotemporal dementia (FTD) is also diverse and multiple molecular pathways are thought to be involved in disease pathogenesis. In the present study, FTD- related genes were evaluated in a Turkish cohort of 175 index FTD patients with a gene panel including GRN, MAPT, TARDBP, FUS, CHMP2B and VCP genes. Potential genetic associations were prospected in 16 patients (9.1%); five variants (p.(Gly35Glufs) and p.(Cys253Ter) in GRN; p.(Arg95Cys) in VCP; p.(Met405Val) in TARDBP and p.(Pro636Leu) in MAPT) were classified as pathogenic (P) or likely pathogenic (LP), in four familial and one sporadic patients. Three novel variants in MAPT, CHMP2B and FUS were also identified in familial cases. The most common pathogenic variants were observed in the GRN gene with a frequency of 1.14% (2/175) and this rate was 4.57% (8/175), including variants of uncertain significance (VUS). In this study with the largest cohort of Turkish FTD patients, GRN and MAPT variants were identified as the most common genetic associations; and rare causes like VCP, TARDBP, CHMP2B and FUS variants are recommended to be considered in patients with compatible clinical findings. |
doi_str_mv | 10.1016/j.neurobiolaging.2021.05.007 |
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Just as its clinical heterogeneity, genetic basis of Frontotemporal dementia (FTD) is also diverse and multiple molecular pathways are thought to be involved in disease pathogenesis. In the present study, FTD- related genes were evaluated in a Turkish cohort of 175 index FTD patients with a gene panel including GRN, MAPT, TARDBP, FUS, CHMP2B and VCP genes. Potential genetic associations were prospected in 16 patients (9.1%); five variants (p.(Gly35Glufs) and p.(Cys253Ter) in GRN; p.(Arg95Cys) in VCP; p.(Met405Val) in TARDBP and p.(Pro636Leu) in MAPT) were classified as pathogenic (P) or likely pathogenic (LP), in four familial and one sporadic patients. Three novel variants in MAPT, CHMP2B and FUS were also identified in familial cases. The most common pathogenic variants were observed in the GRN gene with a frequency of 1.14% (2/175) and this rate was 4.57% (8/175), including variants of uncertain significance (VUS). In this study with the largest cohort of Turkish FTD patients, GRN and MAPT variants were identified as the most common genetic associations; and rare causes like VCP, TARDBP, CHMP2B and FUS variants are recommended to be considered in patients with compatible clinical findings.</description><identifier>ISSN: 0197-4580</identifier><identifier>EISSN: 1558-1497</identifier><identifier>DOI: 10.1016/j.neurobiolaging.2021.05.007</identifier><identifier>PMID: 34162492</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Aged ; Cohort Studies ; DNA-Binding Proteins - genetics ; Endosomal Sorting Complexes Required for Transport - genetics ; Female ; Frontotemporal dementia ; Frontotemporal Dementia - epidemiology ; Frontotemporal Dementia - genetics ; Gene Frequency - genetics ; Genetic Association Studies - methods ; Genetic Variation - genetics ; High-Throughput Nucleotide Sequencing - methods ; Humans ; Male ; Middle Aged ; Next generation sequencing ; Progranulins - genetics ; RNA-Binding Protein FUS - genetics ; tau Proteins - genetics ; Turkey ; Turkey - epidemiology ; Valosin Containing Protein - genetics</subject><ispartof>Neurobiology of aging, 2021-10, Vol.106, p.332.e1-332.e11</ispartof><rights>2021</rights><rights>Copyright © 2021. Published by Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c386t-248fc13379492cbe5c355f6698f181a6d857aadb07ba865299dcf988f94558a73</citedby><cites>FETCH-LOGICAL-c386t-248fc13379492cbe5c355f6698f181a6d857aadb07ba865299dcf988f94558a73</cites><orcidid>0000-0002-1275-5174 ; 0000-0001-6032-0856 ; 0000-0001-7658-6309 ; 0000-0003-2595-3919 ; 0000-0003-3475-564X ; 0000-0002-4624-4428</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.neurobiolaging.2021.05.007$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34162492$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Artan, Sevilhan</creatorcontrib><creatorcontrib>Erzurumluoglu Gokalp, Ebru</creatorcontrib><creatorcontrib>Samanci, Bedia</creatorcontrib><creatorcontrib>Ozbabalik Adapinar, Demet</creatorcontrib><creatorcontrib>Bas, Hasan</creatorcontrib><creatorcontrib>Tepgec, Fatih</creatorcontrib><creatorcontrib>Qomi Ekenel, Emilia</creatorcontrib><creatorcontrib>Cilingir, Oguz</creatorcontrib><creatorcontrib>Bilgic, Basar</creatorcontrib><creatorcontrib>Gurvit, Hakan</creatorcontrib><creatorcontrib>Hanagasi, Hasmet Ayhan</creatorcontrib><creatorcontrib>Kocagil, Sinem</creatorcontrib><creatorcontrib>Durak Aras, Beyhan</creatorcontrib><creatorcontrib>Uyguner, Oya</creatorcontrib><creatorcontrib>Emre, Murat</creatorcontrib><title>Frequency of frontotemporal dementia-related gene variants in Turkey</title><title>Neurobiology of aging</title><addtitle>Neurobiol Aging</addtitle><description>•GRN mutation frequency is higher than the other FTD related genes in Turkish cases•VCP, TARDBP, CHMP2B and FUS can be observed in FTD cases based on clinical evidence•FTD-related genes sequencing is useful in determining genetic etiology, new variants
Just as its clinical heterogeneity, genetic basis of Frontotemporal dementia (FTD) is also diverse and multiple molecular pathways are thought to be involved in disease pathogenesis. In the present study, FTD- related genes were evaluated in a Turkish cohort of 175 index FTD patients with a gene panel including GRN, MAPT, TARDBP, FUS, CHMP2B and VCP genes. Potential genetic associations were prospected in 16 patients (9.1%); five variants (p.(Gly35Glufs) and p.(Cys253Ter) in GRN; p.(Arg95Cys) in VCP; p.(Met405Val) in TARDBP and p.(Pro636Leu) in MAPT) were classified as pathogenic (P) or likely pathogenic (LP), in four familial and one sporadic patients. Three novel variants in MAPT, CHMP2B and FUS were also identified in familial cases. The most common pathogenic variants were observed in the GRN gene with a frequency of 1.14% (2/175) and this rate was 4.57% (8/175), including variants of uncertain significance (VUS). 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Just as its clinical heterogeneity, genetic basis of Frontotemporal dementia (FTD) is also diverse and multiple molecular pathways are thought to be involved in disease pathogenesis. In the present study, FTD- related genes were evaluated in a Turkish cohort of 175 index FTD patients with a gene panel including GRN, MAPT, TARDBP, FUS, CHMP2B and VCP genes. Potential genetic associations were prospected in 16 patients (9.1%); five variants (p.(Gly35Glufs) and p.(Cys253Ter) in GRN; p.(Arg95Cys) in VCP; p.(Met405Val) in TARDBP and p.(Pro636Leu) in MAPT) were classified as pathogenic (P) or likely pathogenic (LP), in four familial and one sporadic patients. Three novel variants in MAPT, CHMP2B and FUS were also identified in familial cases. The most common pathogenic variants were observed in the GRN gene with a frequency of 1.14% (2/175) and this rate was 4.57% (8/175), including variants of uncertain significance (VUS). In this study with the largest cohort of Turkish FTD patients, GRN and MAPT variants were identified as the most common genetic associations; and rare causes like VCP, TARDBP, CHMP2B and FUS variants are recommended to be considered in patients with compatible clinical findings.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>34162492</pmid><doi>10.1016/j.neurobiolaging.2021.05.007</doi><orcidid>https://orcid.org/0000-0002-1275-5174</orcidid><orcidid>https://orcid.org/0000-0001-6032-0856</orcidid><orcidid>https://orcid.org/0000-0001-7658-6309</orcidid><orcidid>https://orcid.org/0000-0003-2595-3919</orcidid><orcidid>https://orcid.org/0000-0003-3475-564X</orcidid><orcidid>https://orcid.org/0000-0002-4624-4428</orcidid></addata></record> |
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subjects | Aged Cohort Studies DNA-Binding Proteins - genetics Endosomal Sorting Complexes Required for Transport - genetics Female Frontotemporal dementia Frontotemporal Dementia - epidemiology Frontotemporal Dementia - genetics Gene Frequency - genetics Genetic Association Studies - methods Genetic Variation - genetics High-Throughput Nucleotide Sequencing - methods Humans Male Middle Aged Next generation sequencing Progranulins - genetics RNA-Binding Protein FUS - genetics tau Proteins - genetics Turkey Turkey - epidemiology Valosin Containing Protein - genetics |
title | Frequency of frontotemporal dementia-related gene variants in Turkey |
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