Constrictifilum karadense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India
ABSTRACT A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered wi...
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| Veröffentlicht in: | FEMS microbiology letters 2021-06, Vol.368 (11), p.1 |
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| creator | Chavadar, Mahesh Saraf, Aniket Suradkar, Archana Mishra, Deeksha Kumar, Naresh Singh, Prashant |
| description | ABSTRACT
A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered with two misidentified strains—Nostoc sp. CENA239 and Calothrix sp. NIES2100. The phylogenetically related members included strains identified as Nostoc, Aulosira, Calothrix, Tolypothrix, Camptylonemopsis and Microchaete. The phylogenetic and the morphological analysis of the strain MKW3 indicated that it does not belong to any of the above mentioned genera. Furthermore, the 16S-23S ITS secondary structure analysis provided clear evidence indicating that strain MKW3 is different from Nostoc sp. CENA239 and Calothrix sp. NIES2100. Based on the morphological, phylogenetic and 16S-23S ITS secondary structure analysis we describe our strain as Constrictifilum karadense gen. et sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.
Constrictifilum karadense gen. et sp. nov. |
| doi_str_mv | 10.1093/femsle/fnab057 |
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A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered with two misidentified strains—Nostoc sp. CENA239 and Calothrix sp. NIES2100. The phylogenetically related members included strains identified as Nostoc, Aulosira, Calothrix, Tolypothrix, Camptylonemopsis and Microchaete. The phylogenetic and the morphological analysis of the strain MKW3 indicated that it does not belong to any of the above mentioned genera. Furthermore, the 16S-23S ITS secondary structure analysis provided clear evidence indicating that strain MKW3 is different from Nostoc sp. CENA239 and Calothrix sp. NIES2100. Based on the morphological, phylogenetic and 16S-23S ITS secondary structure analysis we describe our strain as Constrictifilum karadense gen. et sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.
Constrictifilum karadense gen. et sp. nov.</description><identifier>ISSN: 1574-6968</identifier><identifier>ISSN: 0378-1097</identifier><identifier>EISSN: 1574-6968</identifier><identifier>DOI: 10.1093/femsle/fnab057</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Algae ; Analysis ; Calothrix ; Cyanobacteria ; Extraction (Chemistry) ; Genetic aspects ; Identification and classification ; Methods ; Microbiology ; Morphology ; New species ; Nomenclature ; Nostoc ; Phylogenetics ; Phylogeny ; Protein structure ; RNA sequencing ; rRNA 16S ; Secondary structure ; Structural analysis ; Sugarcane</subject><ispartof>FEMS microbiology letters, 2021-06, Vol.368 (11), p.1</ispartof><rights>The Author(s) 2021. Published by Oxford University Press on behalf of FEMS. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021</rights><rights>COPYRIGHT 2021 Oxford University Press</rights><rights>The Author(s) 2021. Published by Oxford University Press on behalf of FEMS. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c475t-2948696f4e227583cb51238debf22083a262279f702aff8ca3ad190710b21f393</citedby><cites>FETCH-LOGICAL-c475t-2948696f4e227583cb51238debf22083a262279f702aff8ca3ad190710b21f393</cites><orcidid>0000-0001-9884-7741</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1578,27901,27902</link.rule.ids></links><search><creatorcontrib>Chavadar, Mahesh</creatorcontrib><creatorcontrib>Saraf, Aniket</creatorcontrib><creatorcontrib>Suradkar, Archana</creatorcontrib><creatorcontrib>Mishra, Deeksha</creatorcontrib><creatorcontrib>Kumar, Naresh</creatorcontrib><creatorcontrib>Singh, Prashant</creatorcontrib><title>Constrictifilum karadense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India</title><title>FEMS microbiology letters</title><description>ABSTRACT
A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered with two misidentified strains—Nostoc sp. CENA239 and Calothrix sp. NIES2100. The phylogenetically related members included strains identified as Nostoc, Aulosira, Calothrix, Tolypothrix, Camptylonemopsis and Microchaete. The phylogenetic and the morphological analysis of the strain MKW3 indicated that it does not belong to any of the above mentioned genera. Furthermore, the 16S-23S ITS secondary structure analysis provided clear evidence indicating that strain MKW3 is different from Nostoc sp. CENA239 and Calothrix sp. NIES2100. Based on the morphological, phylogenetic and 16S-23S ITS secondary structure analysis we describe our strain as Constrictifilum karadense gen. et sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.
Constrictifilum karadense gen. et sp. nov.</description><subject>Algae</subject><subject>Analysis</subject><subject>Calothrix</subject><subject>Cyanobacteria</subject><subject>Extraction (Chemistry)</subject><subject>Genetic aspects</subject><subject>Identification and classification</subject><subject>Methods</subject><subject>Microbiology</subject><subject>Morphology</subject><subject>New species</subject><subject>Nomenclature</subject><subject>Nostoc</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Protein structure</subject><subject>RNA sequencing</subject><subject>rRNA 16S</subject><subject>Secondary structure</subject><subject>Structural analysis</subject><subject>Sugarcane</subject><issn>1574-6968</issn><issn>0378-1097</issn><issn>1574-6968</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNqFkV1LHTEQhhepoLXe9jrQGwueNZts9uNSDrY9oBVsvSuEOdnJce1ucsxkW_03_S39Zc1BwQ-EkosJzPO-zMybZe8Lnhe8lUcWRxrwyDpYclVvZbuFqstZ1VbNmyf_newt0TXnvBS82s1-zL2jGHoTe9sP0_j3z08I0KEjZCt0OcPIaJ0z53_lhwyYw9_sq6foDQwIbsNMxGzwIzuDqySlqxjgkC1c18O7bNvCQLj_UPeyy08n3-dfZqfnnxfz49OZKWsVZ6ItmzSaLVGIWjXSLFUhZNPh0grBGwmiSo3W1lyAtY0BCV3R8rrgS1FY2cq97ODedx38zYQU9diTwWEAh34iLZQUQjVlXSX0wwv02k_BpekSVbZctaJ8Qq3Slrp31qelzMZUH9fpdLxRQiYqf4VKr8OxN95huig-F3x8JkhMxNu4golIL75dvGpugicKaPU69COEO11wvclb3-etH_J-NPfT-n_sP5axqtM</recordid><startdate>20210601</startdate><enddate>20210601</enddate><creator>Chavadar, Mahesh</creator><creator>Saraf, Aniket</creator><creator>Suradkar, Archana</creator><creator>Mishra, Deeksha</creator><creator>Kumar, Naresh</creator><creator>Singh, Prashant</creator><general>Oxford University Press</general><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9884-7741</orcidid></search><sort><creationdate>20210601</creationdate><title>Constrictifilum karadense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India</title><author>Chavadar, Mahesh ; Saraf, Aniket ; Suradkar, Archana ; Mishra, Deeksha ; Kumar, Naresh ; Singh, Prashant</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c475t-2948696f4e227583cb51238debf22083a262279f702aff8ca3ad190710b21f393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Algae</topic><topic>Analysis</topic><topic>Calothrix</topic><topic>Cyanobacteria</topic><topic>Extraction (Chemistry)</topic><topic>Genetic aspects</topic><topic>Identification and classification</topic><topic>Methods</topic><topic>Microbiology</topic><topic>Morphology</topic><topic>New species</topic><topic>Nomenclature</topic><topic>Nostoc</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Protein structure</topic><topic>RNA sequencing</topic><topic>rRNA 16S</topic><topic>Secondary structure</topic><topic>Structural analysis</topic><topic>Sugarcane</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chavadar, Mahesh</creatorcontrib><creatorcontrib>Saraf, Aniket</creatorcontrib><creatorcontrib>Suradkar, Archana</creatorcontrib><creatorcontrib>Mishra, Deeksha</creatorcontrib><creatorcontrib>Kumar, Naresh</creatorcontrib><creatorcontrib>Singh, Prashant</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chavadar, Mahesh</au><au>Saraf, Aniket</au><au>Suradkar, Archana</au><au>Mishra, Deeksha</au><au>Kumar, Naresh</au><au>Singh, Prashant</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Constrictifilum karadense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India</atitle><jtitle>FEMS microbiology letters</jtitle><date>2021-06-01</date><risdate>2021</risdate><volume>368</volume><issue>11</issue><spage>1</spage><pages>1-</pages><issn>1574-6968</issn><issn>0378-1097</issn><eissn>1574-6968</eissn><abstract>ABSTRACT
A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered with two misidentified strains—Nostoc sp. CENA239 and Calothrix sp. NIES2100. The phylogenetically related members included strains identified as Nostoc, Aulosira, Calothrix, Tolypothrix, Camptylonemopsis and Microchaete. The phylogenetic and the morphological analysis of the strain MKW3 indicated that it does not belong to any of the above mentioned genera. Furthermore, the 16S-23S ITS secondary structure analysis provided clear evidence indicating that strain MKW3 is different from Nostoc sp. CENA239 and Calothrix sp. NIES2100. Based on the morphological, phylogenetic and 16S-23S ITS secondary structure analysis we describe our strain as Constrictifilum karadense gen. et sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.
Constrictifilum karadense gen. et sp. nov.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><doi>10.1093/femsle/fnab057</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-9884-7741</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | FEMS microbiology letters, 2021-06, Vol.368 (11), p.1 |
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| source | Oxford University Press Journals All Titles (1996-Current); Alma/SFX Local Collection |
| subjects | Algae Analysis Calothrix Cyanobacteria Extraction (Chemistry) Genetic aspects Identification and classification Methods Microbiology Morphology New species Nomenclature Nostoc Phylogenetics Phylogeny Protein structure RNA sequencing rRNA 16S Secondary structure Structural analysis Sugarcane |
| title | Constrictifilum karadense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India |
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