Structural studies of hemoglobin from two flightless birds, ostrich and turkey: insights into their differing oxygen‐binding properties
Crystal structures of hemoglobin (Hb) from two flightless birds, ostrich (Struthio camelus) and turkey (Meleagris gallopova), were determined. The ostrich Hb structure was solved to a resolution of 2.22 Å, whereas two forms of turkey Hb were solved to resolutions of 1.66 Å (turkey monoclinic structu...
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Veröffentlicht in: | Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2021-05, Vol.77 (5), p.690-702 |
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creator | Ramesh, Pandian Sundaresan, Selvarajan Sigamani Shobana, Nagaraj Vinuchakkaravarthy, Thangaraj Sivakumar, Kandasamy Yasien, Sayed Ponnuswamy, Mondikalipudur Nanjappa Gounder |
description | Crystal structures of hemoglobin (Hb) from two flightless birds, ostrich (Struthio camelus) and turkey (Meleagris gallopova), were determined. The ostrich Hb structure was solved to a resolution of 2.22 Å, whereas two forms of turkey Hb were solved to resolutions of 1.66 Å (turkey monoclinic structure; TMS) and 1.39 Å (turkey orthorhombic structure; TOS). Comparison of the amino‐acid sequences of ostrich and turkey Hb with those from other avian species revealed no difference in the number of charged residues, but variations were observed in the numbers of hydrophobic and polar residues. Amino‐acid‐composition‐based computation of various physical parameters, in particular their lower inverse transition temperatures and higher average hydrophobicities, indicated that the structures of ostrich and turkey Hb are likely to be highly ordered when compared with other avian Hbs. From the crystal structure analysis, the liganded state of ostrich Hb was confirmed by the presence of an oxygen molecule between the Fe atom and the proximal histidine residue in all four heme regions. In turkey Hb (both TMS and TOS), a water molecule was bound instead of an oxygen molecule in all four heme regions, thus confirming that they assumed the aqua‐met form. Analysis of tertiary‐ and quaternary‐structural features led to the conclusion that ostrich oxy Hb and turkey aqua‐met Hb adopt the R‐/RH‐state conformation.
The crystal structures of hemoglobin from two flightless birds, ostrich at 2.22 Å resolution and turkey in a monoclinic form at 1.66 Å resolution and in an orthorhombic form at 1.39 Å resolution, are reported and their sequential and structural features are interpreted. |
doi_str_mv | 10.1107/S2059798321003417 |
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The crystal structures of hemoglobin from two flightless birds, ostrich at 2.22 Å resolution and turkey in a monoclinic form at 1.66 Å resolution and in an orthorhombic form at 1.39 Å resolution, are reported and their sequential and structural features are interpreted.</description><identifier>ISSN: 2059-7983</identifier><identifier>ISSN: 0907-4449</identifier><identifier>EISSN: 2059-7983</identifier><identifier>EISSN: 1399-0047</identifier><identifier>DOI: 10.1107/S2059798321003417</identifier><identifier>PMID: 33950023</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Conformation ; Crystal structure ; flightless birds ; Heme ; Hemoglobin ; Histidine ; Hydrophobicity ; ostrich ; Oxygen ; oxygen affinity ; Physical properties ; Residues ; Structural analysis ; turkey ; Turkeys ; Water chemistry</subject><ispartof>Acta crystallographica. Section D, Biological crystallography., 2021-05, Vol.77 (5), p.690-702</ispartof><rights>International Union of Crystallography, 2021</rights><rights>Copyright Wiley Subscription Services, Inc. May 2021</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3792-26537976e80aed1b4db152d3e86f3bb3d444f62c3a181838830b5c7385cbbea83</citedby><cites>FETCH-LOGICAL-c3792-26537976e80aed1b4db152d3e86f3bb3d444f62c3a181838830b5c7385cbbea83</cites><orcidid>0000-0001-9060-6337 ; 0000-0002-1781-2115 ; 0000-0001-8871-1082 ; 0000-0002-4947-7243 ; 0000-0002-9848-0123 ; 0000-0003-1220-2999</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS2059798321003417$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS2059798321003417$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33950023$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ramesh, Pandian</creatorcontrib><creatorcontrib>Sundaresan, Selvarajan Sigamani</creatorcontrib><creatorcontrib>Shobana, Nagaraj</creatorcontrib><creatorcontrib>Vinuchakkaravarthy, Thangaraj</creatorcontrib><creatorcontrib>Sivakumar, Kandasamy</creatorcontrib><creatorcontrib>Yasien, Sayed</creatorcontrib><creatorcontrib>Ponnuswamy, Mondikalipudur Nanjappa Gounder</creatorcontrib><title>Structural studies of hemoglobin from two flightless birds, ostrich and turkey: insights into their differing oxygen‐binding properties</title><title>Acta crystallographica. Section D, Biological crystallography.</title><addtitle>Acta Crystallogr D Struct Biol</addtitle><description>Crystal structures of hemoglobin (Hb) from two flightless birds, ostrich (Struthio camelus) and turkey (Meleagris gallopova), were determined. The ostrich Hb structure was solved to a resolution of 2.22 Å, whereas two forms of turkey Hb were solved to resolutions of 1.66 Å (turkey monoclinic structure; TMS) and 1.39 Å (turkey orthorhombic structure; TOS). Comparison of the amino‐acid sequences of ostrich and turkey Hb with those from other avian species revealed no difference in the number of charged residues, but variations were observed in the numbers of hydrophobic and polar residues. Amino‐acid‐composition‐based computation of various physical parameters, in particular their lower inverse transition temperatures and higher average hydrophobicities, indicated that the structures of ostrich and turkey Hb are likely to be highly ordered when compared with other avian Hbs. From the crystal structure analysis, the liganded state of ostrich Hb was confirmed by the presence of an oxygen molecule between the Fe atom and the proximal histidine residue in all four heme regions. In turkey Hb (both TMS and TOS), a water molecule was bound instead of an oxygen molecule in all four heme regions, thus confirming that they assumed the aqua‐met form. Analysis of tertiary‐ and quaternary‐structural features led to the conclusion that ostrich oxy Hb and turkey aqua‐met Hb adopt the R‐/RH‐state conformation.
The crystal structures of hemoglobin from two flightless birds, ostrich at 2.22 Å resolution and turkey in a monoclinic form at 1.66 Å resolution and in an orthorhombic form at 1.39 Å resolution, are reported and their sequential and structural features are interpreted.</description><subject>Conformation</subject><subject>Crystal structure</subject><subject>flightless birds</subject><subject>Heme</subject><subject>Hemoglobin</subject><subject>Histidine</subject><subject>Hydrophobicity</subject><subject>ostrich</subject><subject>Oxygen</subject><subject>oxygen affinity</subject><subject>Physical properties</subject><subject>Residues</subject><subject>Structural analysis</subject><subject>turkey</subject><subject>Turkeys</subject><subject>Water chemistry</subject><issn>2059-7983</issn><issn>0907-4449</issn><issn>2059-7983</issn><issn>1399-0047</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNqFkb1OHDEUha0IFNDCA6SJLKWhyJJre3486RCEEAmJAoJENRqPr3dNZsYb2yOyXVq6PCNPgoclEUqKVPfq6DvnWj6EvGFwyBiUHy455FVZScEZgMhY-YrsTtJ80rZe7DtkP4RbAGCFKJnIXpMdIaocgItdcn8Z_djG0TcdDXHUFgN1hi6xd4vOKTtQ411P452jprOLZewwBKqs1-E9dSF62y5pM2iaIr7h-iO1Q5iwkJboaFyi9VRbY9DbYUHdj_UCh4efv1KynoSVdyv0MZ3dI9um6QLuP88Z-Xr66er4bH5-8fnL8dH5vBVlxee8yNMsC5TQoGYq04rlXAuUhRFKCZ1lmSl4KxommRRSClB5WwqZt0phI8WMHGxy0-nvI4ZY9za02HXNgG4MNc85z4ABKxP67i_01o1-SK97oiADkb5-RtiGar0LwaOpV972jV_XDOqpqvqfqpLn7XPyqHrUfxy_i0lAtQHubIfr_yfWRzcn_PriyfwI0Q-hPQ</recordid><startdate>202105</startdate><enddate>202105</enddate><creator>Ramesh, Pandian</creator><creator>Sundaresan, Selvarajan Sigamani</creator><creator>Shobana, Nagaraj</creator><creator>Vinuchakkaravarthy, Thangaraj</creator><creator>Sivakumar, Kandasamy</creator><creator>Yasien, Sayed</creator><creator>Ponnuswamy, Mondikalipudur Nanjappa Gounder</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7SP</scope><scope>7SR</scope><scope>7TK</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>H8D</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9060-6337</orcidid><orcidid>https://orcid.org/0000-0002-1781-2115</orcidid><orcidid>https://orcid.org/0000-0001-8871-1082</orcidid><orcidid>https://orcid.org/0000-0002-4947-7243</orcidid><orcidid>https://orcid.org/0000-0002-9848-0123</orcidid><orcidid>https://orcid.org/0000-0003-1220-2999</orcidid></search><sort><creationdate>202105</creationdate><title>Structural studies of hemoglobin from two flightless birds, ostrich and turkey: insights into their differing oxygen‐binding properties</title><author>Ramesh, Pandian ; Sundaresan, Selvarajan Sigamani ; Shobana, Nagaraj ; Vinuchakkaravarthy, Thangaraj ; Sivakumar, Kandasamy ; Yasien, Sayed ; Ponnuswamy, Mondikalipudur Nanjappa Gounder</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3792-26537976e80aed1b4db152d3e86f3bb3d444f62c3a181838830b5c7385cbbea83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Conformation</topic><topic>Crystal structure</topic><topic>flightless birds</topic><topic>Heme</topic><topic>Hemoglobin</topic><topic>Histidine</topic><topic>Hydrophobicity</topic><topic>ostrich</topic><topic>Oxygen</topic><topic>oxygen affinity</topic><topic>Physical properties</topic><topic>Residues</topic><topic>Structural analysis</topic><topic>turkey</topic><topic>Turkeys</topic><topic>Water chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ramesh, Pandian</creatorcontrib><creatorcontrib>Sundaresan, Selvarajan Sigamani</creatorcontrib><creatorcontrib>Shobana, Nagaraj</creatorcontrib><creatorcontrib>Vinuchakkaravarthy, Thangaraj</creatorcontrib><creatorcontrib>Sivakumar, Kandasamy</creatorcontrib><creatorcontrib>Yasien, Sayed</creatorcontrib><creatorcontrib>Ponnuswamy, Mondikalipudur Nanjappa Gounder</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><jtitle>Acta crystallographica. 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Section D, Biological crystallography.</jtitle><addtitle>Acta Crystallogr D Struct Biol</addtitle><date>2021-05</date><risdate>2021</risdate><volume>77</volume><issue>5</issue><spage>690</spage><epage>702</epage><pages>690-702</pages><issn>2059-7983</issn><issn>0907-4449</issn><eissn>2059-7983</eissn><eissn>1399-0047</eissn><abstract>Crystal structures of hemoglobin (Hb) from two flightless birds, ostrich (Struthio camelus) and turkey (Meleagris gallopova), were determined. The ostrich Hb structure was solved to a resolution of 2.22 Å, whereas two forms of turkey Hb were solved to resolutions of 1.66 Å (turkey monoclinic structure; TMS) and 1.39 Å (turkey orthorhombic structure; TOS). Comparison of the amino‐acid sequences of ostrich and turkey Hb with those from other avian species revealed no difference in the number of charged residues, but variations were observed in the numbers of hydrophobic and polar residues. Amino‐acid‐composition‐based computation of various physical parameters, in particular their lower inverse transition temperatures and higher average hydrophobicities, indicated that the structures of ostrich and turkey Hb are likely to be highly ordered when compared with other avian Hbs. From the crystal structure analysis, the liganded state of ostrich Hb was confirmed by the presence of an oxygen molecule between the Fe atom and the proximal histidine residue in all four heme regions. In turkey Hb (both TMS and TOS), a water molecule was bound instead of an oxygen molecule in all four heme regions, thus confirming that they assumed the aqua‐met form. Analysis of tertiary‐ and quaternary‐structural features led to the conclusion that ostrich oxy Hb and turkey aqua‐met Hb adopt the R‐/RH‐state conformation.
The crystal structures of hemoglobin from two flightless birds, ostrich at 2.22 Å resolution and turkey in a monoclinic form at 1.66 Å resolution and in an orthorhombic form at 1.39 Å resolution, are reported and their sequential and structural features are interpreted.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>33950023</pmid><doi>10.1107/S2059798321003417</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-9060-6337</orcidid><orcidid>https://orcid.org/0000-0002-1781-2115</orcidid><orcidid>https://orcid.org/0000-0001-8871-1082</orcidid><orcidid>https://orcid.org/0000-0002-4947-7243</orcidid><orcidid>https://orcid.org/0000-0002-9848-0123</orcidid><orcidid>https://orcid.org/0000-0003-1220-2999</orcidid></addata></record> |
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subjects | Conformation Crystal structure flightless birds Heme Hemoglobin Histidine Hydrophobicity ostrich Oxygen oxygen affinity Physical properties Residues Structural analysis turkey Turkeys Water chemistry |
title | Structural studies of hemoglobin from two flightless birds, ostrich and turkey: insights into their differing oxygen‐binding properties |
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