Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella
Polyphasic taxonomic studies were performed for the seven strains, which were isolated from sap extracted from Acer pictum in Mt. Halla in Jeju, Republic of Korea. Cells of all the isolates were Gram-reaction-negative, facultatively anaerobic, short rods and contained the major isoprenoid quinone of...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2021-07, Vol.114 (7), p.1013-1024 |
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| description | Polyphasic taxonomic studies were performed for the seven strains, which were isolated from sap extracted from
Acer pictum
in Mt. Halla in Jeju, Republic of Korea. Cells of all the isolates were Gram-reaction-negative, facultatively anaerobic, short rods and contained the major isoprenoid quinone of Q-8, the predominant fatty acids of C
16:0
and C
17:0
cyclo and the major polar lipids including phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. The G + C contents of the genomic DNAs were 50.6–51.3%.The 16S rRNA gene-based phylogeny exhibited that the seven isolates formed two distinct sublines within the family
Yersiniaceae.
In the 92 core gene analysis, strain SAP-1
T
formed a subline at the base of radiation of the genus
Rouxiella
and its assignment to the genus
Rouxiella
was supported by high amino acid identity values (82.0–83.4%), albeit with sharing low 16S rRNA gene identities (96.0–96.9%). The average nucleotide identity and digital DNA-DNA hybridisation values together with phenotypic differences showed that strains SAP-1
T
, SAP-7, SAP-8 and SAP-13 belonged to a new species of the genus
Rouxiella
, while strains SAP-2, SAP-3 and SAP-27 were strains of
Rouxiella silvae
. On the basis of data obtained here,
Rouxiella aceris
sp. nov. (type strain, SAP-1
T
= KCTC 72599
T
= CCM 9078
T
) is proposed, with the emended description of the genus
Rouxiella
. |
| doi_str_mv | 10.1007/s10482-021-01572-0 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2511899358</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2543899987</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-4bbabaccc147f8d9a3cefcf482c59df883bb25977f20f8823a31a92322330253</originalsourceid><addsrcrecordid>eNp9kUtLxDAUhYMozvj4Ay4k4MaFHfNoJ8lSBl8gCDL7kKY3Wpk2NWlF_71xOo7gwlXu5Xz35CYHoRNKZpQQcRkpySXLCKMZoYVI1Q6args1V2oXTQkhPJsTwSboIMbX1Kq5FPtowrnMmVL5FFVPfvioYbUy2FgIdcSxm-HWv88ucB39yvRQYRd8g_sAgKPpsGkr3L8AhgbaKqkVRBvqrq99i71bS8_QDhFvrY_QnjOrCMeb8xAtb66Xi7vs4fH2fnH1kFkuij7Ly9KUxlpLc-FkpQy34KxLb7SFqpyUvCxZoYRwjKSOccOpUYwzxjlhBT9E56NtF_zbALHXTR3t9wIt-CFqVlAqleKFTOjZH_TVD6FNyyUq54lSUiSKjZQNPsYATnehbkz41JTo7wj0GIFOEeh1BJqkodON9VA2UG1Hfv48AXwEYpLaZwi_d_9j-wUV95D0</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2543899987</pqid></control><display><type>article</type><title>Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella</title><source>SpringerLink Journals</source><creator>Lee, Soon Dong ; Yang, Hong Lim ; Kim, In Seop</creator><creatorcontrib>Lee, Soon Dong ; Yang, Hong Lim ; Kim, In Seop</creatorcontrib><description>Polyphasic taxonomic studies were performed for the seven strains, which were isolated from sap extracted from
Acer pictum
in Mt. Halla in Jeju, Republic of Korea. Cells of all the isolates were Gram-reaction-negative, facultatively anaerobic, short rods and contained the major isoprenoid quinone of Q-8, the predominant fatty acids of C
16:0
and C
17:0
cyclo and the major polar lipids including phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. The G + C contents of the genomic DNAs were 50.6–51.3%.The 16S rRNA gene-based phylogeny exhibited that the seven isolates formed two distinct sublines within the family
Yersiniaceae.
In the 92 core gene analysis, strain SAP-1
T
formed a subline at the base of radiation of the genus
Rouxiella
and its assignment to the genus
Rouxiella
was supported by high amino acid identity values (82.0–83.4%), albeit with sharing low 16S rRNA gene identities (96.0–96.9%). The average nucleotide identity and digital DNA-DNA hybridisation values together with phenotypic differences showed that strains SAP-1
T
, SAP-7, SAP-8 and SAP-13 belonged to a new species of the genus
Rouxiella
, while strains SAP-2, SAP-3 and SAP-27 were strains of
Rouxiella silvae
. On the basis of data obtained here,
Rouxiella aceris
sp. nov. (type strain, SAP-1
T
= KCTC 72599
T
= CCM 9078
T
) is proposed, with the emended description of the genus
Rouxiella
.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01572-0</identifier><identifier>PMID: 33842994</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Amino acids ; Biomedical and Life Sciences ; Deoxyribonucleic acid ; DNA ; Fatty acids ; Genes ; Genomes ; Glycerol ; Hybridization ; Life Sciences ; Lipids ; Medical Microbiology ; Microbiology ; Morphology ; Motility ; New species ; Nucleotides ; Original Paper ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phylogeny ; Plant Sciences ; Quinones ; rRNA 16S ; Soil Science & Conservation ; Taxonomy</subject><ispartof>Antonie van Leeuwenhoek, 2021-07, Vol.114 (7), p.1013-1024</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-4bbabaccc147f8d9a3cefcf482c59df883bb25977f20f8823a31a92322330253</citedby><cites>FETCH-LOGICAL-c375t-4bbabaccc147f8d9a3cefcf482c59df883bb25977f20f8823a31a92322330253</cites><orcidid>0000-0002-8043-9544</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01572-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01572-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33842994$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, Soon Dong</creatorcontrib><creatorcontrib>Yang, Hong Lim</creatorcontrib><creatorcontrib>Kim, In Seop</creatorcontrib><title>Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>Polyphasic taxonomic studies were performed for the seven strains, which were isolated from sap extracted from
Acer pictum
in Mt. Halla in Jeju, Republic of Korea. Cells of all the isolates were Gram-reaction-negative, facultatively anaerobic, short rods and contained the major isoprenoid quinone of Q-8, the predominant fatty acids of C
16:0
and C
17:0
cyclo and the major polar lipids including phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. The G + C contents of the genomic DNAs were 50.6–51.3%.The 16S rRNA gene-based phylogeny exhibited that the seven isolates formed two distinct sublines within the family
Yersiniaceae.
In the 92 core gene analysis, strain SAP-1
T
formed a subline at the base of radiation of the genus
Rouxiella
and its assignment to the genus
Rouxiella
was supported by high amino acid identity values (82.0–83.4%), albeit with sharing low 16S rRNA gene identities (96.0–96.9%). The average nucleotide identity and digital DNA-DNA hybridisation values together with phenotypic differences showed that strains SAP-1
T
, SAP-7, SAP-8 and SAP-13 belonged to a new species of the genus
Rouxiella
, while strains SAP-2, SAP-3 and SAP-27 were strains of
Rouxiella silvae
. On the basis of data obtained here,
Rouxiella aceris
sp. nov. (type strain, SAP-1
T
= KCTC 72599
T
= CCM 9078
T
) is proposed, with the emended description of the genus
Rouxiella
.</description><subject>Amino acids</subject><subject>Biomedical and Life Sciences</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fatty acids</subject><subject>Genes</subject><subject>Genomes</subject><subject>Glycerol</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Morphology</subject><subject>Motility</subject><subject>New species</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Quinones</subject><subject>rRNA 16S</subject><subject>Soil Science & Conservation</subject><subject>Taxonomy</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kUtLxDAUhYMozvj4Ay4k4MaFHfNoJ8lSBl8gCDL7kKY3Wpk2NWlF_71xOo7gwlXu5Xz35CYHoRNKZpQQcRkpySXLCKMZoYVI1Q6args1V2oXTQkhPJsTwSboIMbX1Kq5FPtowrnMmVL5FFVPfvioYbUy2FgIdcSxm-HWv88ucB39yvRQYRd8g_sAgKPpsGkr3L8AhgbaKqkVRBvqrq99i71bS8_QDhFvrY_QnjOrCMeb8xAtb66Xi7vs4fH2fnH1kFkuij7Ly9KUxlpLc-FkpQy34KxLb7SFqpyUvCxZoYRwjKSOccOpUYwzxjlhBT9E56NtF_zbALHXTR3t9wIt-CFqVlAqleKFTOjZH_TVD6FNyyUq54lSUiSKjZQNPsYATnehbkz41JTo7wj0GIFOEeh1BJqkodON9VA2UG1Hfv48AXwEYpLaZwi_d_9j-wUV95D0</recordid><startdate>20210701</startdate><enddate>20210701</enddate><creator>Lee, Soon Dong</creator><creator>Yang, Hong Lim</creator><creator>Kim, In Seop</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8043-9544</orcidid></search><sort><creationdate>20210701</creationdate><title>Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella</title><author>Lee, Soon Dong ; Yang, Hong Lim ; Kim, In Seop</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-4bbabaccc147f8d9a3cefcf482c59df883bb25977f20f8823a31a92322330253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amino acids</topic><topic>Biomedical and Life Sciences</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Fatty acids</topic><topic>Genes</topic><topic>Genomes</topic><topic>Glycerol</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Morphology</topic><topic>Motility</topic><topic>New species</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Quinones</topic><topic>rRNA 16S</topic><topic>Soil Science & Conservation</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Soon Dong</creatorcontrib><creatorcontrib>Yang, Hong Lim</creatorcontrib><creatorcontrib>Kim, In Seop</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Soon Dong</au><au>Yang, Hong Lim</au><au>Kim, In Seop</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2021-07-01</date><risdate>2021</risdate><volume>114</volume><issue>7</issue><spage>1013</spage><epage>1024</epage><pages>1013-1024</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>Polyphasic taxonomic studies were performed for the seven strains, which were isolated from sap extracted from
Acer pictum
in Mt. Halla in Jeju, Republic of Korea. Cells of all the isolates were Gram-reaction-negative, facultatively anaerobic, short rods and contained the major isoprenoid quinone of Q-8, the predominant fatty acids of C
16:0
and C
17:0
cyclo and the major polar lipids including phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. The G + C contents of the genomic DNAs were 50.6–51.3%.The 16S rRNA gene-based phylogeny exhibited that the seven isolates formed two distinct sublines within the family
Yersiniaceae.
In the 92 core gene analysis, strain SAP-1
T
formed a subline at the base of radiation of the genus
Rouxiella
and its assignment to the genus
Rouxiella
was supported by high amino acid identity values (82.0–83.4%), albeit with sharing low 16S rRNA gene identities (96.0–96.9%). The average nucleotide identity and digital DNA-DNA hybridisation values together with phenotypic differences showed that strains SAP-1
T
, SAP-7, SAP-8 and SAP-13 belonged to a new species of the genus
Rouxiella
, while strains SAP-2, SAP-3 and SAP-27 were strains of
Rouxiella silvae
. On the basis of data obtained here,
Rouxiella aceris
sp. nov. (type strain, SAP-1
T
= KCTC 72599
T
= CCM 9078
T
) is proposed, with the emended description of the genus
Rouxiella
.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>33842994</pmid><doi>10.1007/s10482-021-01572-0</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-8043-9544</orcidid></addata></record> |
| fulltext | fulltext |
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| ispartof | Antonie van Leeuwenhoek, 2021-07, Vol.114 (7), p.1013-1024 |
| issn | 0003-6072 1572-9699 |
| language | eng |
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| source | SpringerLink Journals |
| subjects | Amino acids Biomedical and Life Sciences Deoxyribonucleic acid DNA Fatty acids Genes Genomes Glycerol Hybridization Life Sciences Lipids Medical Microbiology Microbiology Morphology Motility New species Nucleotides Original Paper Phosphatidylethanolamine Phosphatidylglycerol Phylogeny Plant Sciences Quinones rRNA 16S Soil Science & Conservation Taxonomy |
| title | Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella |
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