Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen
Key message Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen Colletotrichum falcatum were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarca...
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creator | Nandakumar, M. Malathi, P. Sundar, A. R. Rajadurai, C. P. Philip, Manuel Viswanathan, R. |
description | Key message
Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen
Colletotrichum falcatum
were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarcane defense response to
C. falcatum
for the first time.
Resistance against the fungal pathogen
Colletotrichum falcatum
causing red rot is one of the most desirable traits for sustainable crop cultivation in sugarcane. To gain new insight into the host defense mechanism against
C. falcatum
, we studied the role of sugarcane microRNAs during compatible and incompatible interactions by adopting the NGS platform. We have sequenced a total of 80 miRNA families that comprised 980 miRNAs, and the putative targets of the miRNAs include transcription factors, membrane-bound proteins, glutamate receptor proteins, lignin biosynthesis proteins, signaling cascade proteins, transporter proteins, mitochondrial proteins, ER proteins, defense-related, stress response proteins, translational regulation proteins, cell proliferation, and ubiquitination proteins. Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen
C. falcatum
. The present study revealed the role of sugarcane miRNAs and their target genes during sugarcane—
C. falcatum
interaction and provided new insight into the miRNA-mediated defense mechanism in sugarcane for the first time. |
doi_str_mv | 10.1007/s00299-021-02682-9 |
format | Article |
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Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen
Colletotrichum falcatum
were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarcane defense response to
C. falcatum
for the first time.
Resistance against the fungal pathogen
Colletotrichum falcatum
causing red rot is one of the most desirable traits for sustainable crop cultivation in sugarcane. To gain new insight into the host defense mechanism against
C. falcatum
, we studied the role of sugarcane microRNAs during compatible and incompatible interactions by adopting the NGS platform. We have sequenced a total of 80 miRNA families that comprised 980 miRNAs, and the putative targets of the miRNAs include transcription factors, membrane-bound proteins, glutamate receptor proteins, lignin biosynthesis proteins, signaling cascade proteins, transporter proteins, mitochondrial proteins, ER proteins, defense-related, stress response proteins, translational regulation proteins, cell proliferation, and ubiquitination proteins. Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen
C. falcatum
. The present study revealed the role of sugarcane miRNAs and their target genes during sugarcane—
C. falcatum
interaction and provided new insight into the miRNA-mediated defense mechanism in sugarcane for the first time.</description><identifier>ISSN: 0721-7714</identifier><identifier>EISSN: 1432-203X</identifier><identifier>DOI: 10.1007/s00299-021-02682-9</identifier><identifier>PMID: 33818644</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biomedical and Life Sciences ; Biosynthesis ; Biotechnology ; Cell Biology ; Cell proliferation ; Cellular stress response ; Colletotrichum - genetics ; Colletotrichum - pathogenicity ; Colletotrichum falcatum ; Compatibility ; Defense mechanisms ; Endoplasmic reticulum ; Gene expression ; Gene Expression Regulation, Plant ; Genes ; Glutamate receptors ; Host-Pathogen Interactions ; Life Sciences ; MicroRNAs ; MicroRNAs - genetics ; MicroRNAs - metabolism ; miRNA ; Mitochondria ; Original Article ; Pathogens ; Plant Biochemistry ; Plant Diseases - microbiology ; Plant Sciences ; Protein transport ; Proteins ; Red rot ; Saccharum - genetics ; Saccharum - metabolism ; Saccharum - microbiology ; Signaling ; Sugarcane ; Sustainable agriculture ; Transcription factors ; Ubiquitination</subject><ispartof>Plant cell reports, 2021-05, Vol.40 (5), p.851-870</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-bda3fb033a5f9ff0861cd74fa92412f6e1d5f198579a4e35e1287854abef7de33</citedby><cites>FETCH-LOGICAL-c375t-bda3fb033a5f9ff0861cd74fa92412f6e1d5f198579a4e35e1287854abef7de33</cites><orcidid>0000-0002-7274-8144</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00299-021-02682-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00299-021-02682-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33818644$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nandakumar, M.</creatorcontrib><creatorcontrib>Malathi, P.</creatorcontrib><creatorcontrib>Sundar, A. R.</creatorcontrib><creatorcontrib>Rajadurai, C. P.</creatorcontrib><creatorcontrib>Philip, Manuel</creatorcontrib><creatorcontrib>Viswanathan, R.</creatorcontrib><title>Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen</title><title>Plant cell reports</title><addtitle>Plant Cell Rep</addtitle><addtitle>Plant Cell Rep</addtitle><description>Key message
Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen
Colletotrichum falcatum
were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarcane defense response to
C. falcatum
for the first time.
Resistance against the fungal pathogen
Colletotrichum falcatum
causing red rot is one of the most desirable traits for sustainable crop cultivation in sugarcane. To gain new insight into the host defense mechanism against
C. falcatum
, we studied the role of sugarcane microRNAs during compatible and incompatible interactions by adopting the NGS platform. We have sequenced a total of 80 miRNA families that comprised 980 miRNAs, and the putative targets of the miRNAs include transcription factors, membrane-bound proteins, glutamate receptor proteins, lignin biosynthesis proteins, signaling cascade proteins, transporter proteins, mitochondrial proteins, ER proteins, defense-related, stress response proteins, translational regulation proteins, cell proliferation, and ubiquitination proteins. Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen
C. falcatum
. The present study revealed the role of sugarcane miRNAs and their target genes during sugarcane—
C. falcatum
interaction and provided new insight into the miRNA-mediated defense mechanism in sugarcane for the first time.</description><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Cell proliferation</subject><subject>Cellular stress response</subject><subject>Colletotrichum - genetics</subject><subject>Colletotrichum - pathogenicity</subject><subject>Colletotrichum falcatum</subject><subject>Compatibility</subject><subject>Defense mechanisms</subject><subject>Endoplasmic reticulum</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Glutamate receptors</subject><subject>Host-Pathogen Interactions</subject><subject>Life Sciences</subject><subject>MicroRNAs</subject><subject>MicroRNAs - genetics</subject><subject>MicroRNAs - metabolism</subject><subject>miRNA</subject><subject>Mitochondria</subject><subject>Original Article</subject><subject>Pathogens</subject><subject>Plant Biochemistry</subject><subject>Plant Diseases - microbiology</subject><subject>Plant Sciences</subject><subject>Protein transport</subject><subject>Proteins</subject><subject>Red rot</subject><subject>Saccharum - genetics</subject><subject>Saccharum - metabolism</subject><subject>Saccharum - microbiology</subject><subject>Signaling</subject><subject>Sugarcane</subject><subject>Sustainable agriculture</subject><subject>Transcription factors</subject><subject>Ubiquitination</subject><issn>0721-7714</issn><issn>1432-203X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kctq3DAUhkVoSSZpX6CLIOgmi7jVzZa0DENuEFoYWuhOyPbRjINtTSSZkF3eIW-YJ4kyM2mgiy6E4JxP3znoR-gLJd8oIfJ7JIRpXRBG86kUK_QemlHBWcEI__MBzYjMLSmpOECHMd4Skpuy2kcHnCuqKiFmaFr4HrB3eOgWP84i7kacVoBXPqbnx6e1TSu_hDGXEwTbpM6PuIZ0D7kWp6UNjR0B27HFc9_3kHwKXbOaBuxs39g0DacbXYAWB5_wm-8T-piBCJ939xH6fXH-a35V3Py8vJ6f3RQNl2Uq6tZyVxPObem0c0RVtGmlcFYzQZmrgLalo1qVUlsBvATKlFSlsDU42QLnR-hk610HfzdBTGboYgN9n7f2UzSsJEppQbXO6Nd_0Fs_hTFvlylaCp3_mmSKbakm-BgDOLMO3WDDg6HEvIZitqGYHIrZhGJe1cc79VQP0P598pZCBvgWiLk1LiG8z_6P9gXqfZly</recordid><startdate>20210501</startdate><enddate>20210501</enddate><creator>Nandakumar, M.</creator><creator>Malathi, P.</creator><creator>Sundar, A. R.</creator><creator>Rajadurai, C. P.</creator><creator>Philip, Manuel</creator><creator>Viswanathan, R.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-7274-8144</orcidid></search><sort><creationdate>20210501</creationdate><title>Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen</title><author>Nandakumar, M. ; Malathi, P. ; Sundar, A. R. ; Rajadurai, C. P. ; Philip, Manuel ; Viswanathan, R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-bda3fb033a5f9ff0861cd74fa92412f6e1d5f198579a4e35e1287854abef7de33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biosynthesis</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Cell proliferation</topic><topic>Cellular stress response</topic><topic>Colletotrichum - genetics</topic><topic>Colletotrichum - pathogenicity</topic><topic>Colletotrichum falcatum</topic><topic>Compatibility</topic><topic>Defense mechanisms</topic><topic>Endoplasmic reticulum</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Glutamate receptors</topic><topic>Host-Pathogen Interactions</topic><topic>Life Sciences</topic><topic>MicroRNAs</topic><topic>MicroRNAs - genetics</topic><topic>MicroRNAs - metabolism</topic><topic>miRNA</topic><topic>Mitochondria</topic><topic>Original Article</topic><topic>Pathogens</topic><topic>Plant Biochemistry</topic><topic>Plant Diseases - microbiology</topic><topic>Plant Sciences</topic><topic>Protein transport</topic><topic>Proteins</topic><topic>Red rot</topic><topic>Saccharum - genetics</topic><topic>Saccharum - metabolism</topic><topic>Saccharum - microbiology</topic><topic>Signaling</topic><topic>Sugarcane</topic><topic>Sustainable agriculture</topic><topic>Transcription factors</topic><topic>Ubiquitination</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nandakumar, M.</creatorcontrib><creatorcontrib>Malathi, P.</creatorcontrib><creatorcontrib>Sundar, A. R.</creatorcontrib><creatorcontrib>Rajadurai, C. P.</creatorcontrib><creatorcontrib>Philip, Manuel</creatorcontrib><creatorcontrib>Viswanathan, R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant cell reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nandakumar, M.</au><au>Malathi, P.</au><au>Sundar, A. R.</au><au>Rajadurai, C. P.</au><au>Philip, Manuel</au><au>Viswanathan, R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen</atitle><jtitle>Plant cell reports</jtitle><stitle>Plant Cell Rep</stitle><addtitle>Plant Cell Rep</addtitle><date>2021-05-01</date><risdate>2021</risdate><volume>40</volume><issue>5</issue><spage>851</spage><epage>870</epage><pages>851-870</pages><issn>0721-7714</issn><eissn>1432-203X</eissn><abstract>Key message
Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen
Colletotrichum falcatum
were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarcane defense response to
C. falcatum
for the first time.
Resistance against the fungal pathogen
Colletotrichum falcatum
causing red rot is one of the most desirable traits for sustainable crop cultivation in sugarcane. To gain new insight into the host defense mechanism against
C. falcatum
, we studied the role of sugarcane microRNAs during compatible and incompatible interactions by adopting the NGS platform. We have sequenced a total of 80 miRNA families that comprised 980 miRNAs, and the putative targets of the miRNAs include transcription factors, membrane-bound proteins, glutamate receptor proteins, lignin biosynthesis proteins, signaling cascade proteins, transporter proteins, mitochondrial proteins, ER proteins, defense-related, stress response proteins, translational regulation proteins, cell proliferation, and ubiquitination proteins. Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen
C. falcatum
. The present study revealed the role of sugarcane miRNAs and their target genes during sugarcane—
C. falcatum
interaction and provided new insight into the miRNA-mediated defense mechanism in sugarcane for the first time.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>33818644</pmid><doi>10.1007/s00299-021-02682-9</doi><tpages>20</tpages><orcidid>https://orcid.org/0000-0002-7274-8144</orcidid></addata></record> |
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subjects | Biomedical and Life Sciences Biosynthesis Biotechnology Cell Biology Cell proliferation Cellular stress response Colletotrichum - genetics Colletotrichum - pathogenicity Colletotrichum falcatum Compatibility Defense mechanisms Endoplasmic reticulum Gene expression Gene Expression Regulation, Plant Genes Glutamate receptors Host-Pathogen Interactions Life Sciences MicroRNAs MicroRNAs - genetics MicroRNAs - metabolism miRNA Mitochondria Original Article Pathogens Plant Biochemistry Plant Diseases - microbiology Plant Sciences Protein transport Proteins Red rot Saccharum - genetics Saccharum - metabolism Saccharum - microbiology Signaling Sugarcane Sustainable agriculture Transcription factors Ubiquitination |
title | Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen |
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