Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen

Key message Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen Colletotrichum falcatum were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarca...

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Veröffentlicht in:Plant cell reports 2021-05, Vol.40 (5), p.851-870
Hauptverfasser: Nandakumar, M., Malathi, P., Sundar, A. R., Rajadurai, C. P., Philip, Manuel, Viswanathan, R.
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container_title Plant cell reports
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creator Nandakumar, M.
Malathi, P.
Sundar, A. R.
Rajadurai, C. P.
Philip, Manuel
Viswanathan, R.
description Key message Sugarcane microRNAs specifically involved during compatible and incompatible interactions with red rot pathogen Colletotrichum falcatum were identified. We have identified how the miRNAs regulate their gene targets and elaborated evidently on the underlying molecular mechanism of sugarcane defense response to C. falcatum for the first time. Resistance against the fungal pathogen Colletotrichum falcatum causing red rot is one of the most desirable traits for sustainable crop cultivation in sugarcane. To gain new insight into the host defense mechanism against C. falcatum , we studied the role of sugarcane microRNAs during compatible and incompatible interactions by adopting the NGS platform. We have sequenced a total of 80 miRNA families that comprised 980 miRNAs, and the putative targets of the miRNAs include transcription factors, membrane-bound proteins, glutamate receptor proteins, lignin biosynthesis proteins, signaling cascade proteins, transporter proteins, mitochondrial proteins, ER proteins, defense-related, stress response proteins, translational regulation proteins, cell proliferation, and ubiquitination proteins. Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen C. falcatum . The present study revealed the role of sugarcane miRNAs and their target genes during sugarcane— C. falcatum interaction and provided new insight into the miRNA-mediated defense mechanism in sugarcane for the first time.
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Further, qRT-PCR analyses of 8 differentially regulated miRNAs and 26 gene transcript targets expression indicated that these miRNAs have a regulatory effect on the expression of respective target genes in most of the cases. Also, the results suggest that certain miRNA regulates many target genes that are involved in inciting early responses to the pathogen infection, signaling pathways, endoplasmic reticulum stress, and resistance gene activation through feedback response from various cellular processes during the compatible and incompatible interaction with the red rot pathogen C. falcatum . 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subjects Biomedical and Life Sciences
Biosynthesis
Biotechnology
Cell Biology
Cell proliferation
Cellular stress response
Colletotrichum - genetics
Colletotrichum - pathogenicity
Colletotrichum falcatum
Compatibility
Defense mechanisms
Endoplasmic reticulum
Gene expression
Gene Expression Regulation, Plant
Genes
Glutamate receptors
Host-Pathogen Interactions
Life Sciences
MicroRNAs
MicroRNAs - genetics
MicroRNAs - metabolism
miRNA
Mitochondria
Original Article
Pathogens
Plant Biochemistry
Plant Diseases - microbiology
Plant Sciences
Protein transport
Proteins
Red rot
Saccharum - genetics
Saccharum - metabolism
Saccharum - microbiology
Signaling
Sugarcane
Sustainable agriculture
Transcription factors
Ubiquitination
title Role of miRNAs in the host–pathogen interaction between sugarcane and Colletotrichum falcatum, the red rot pathogen
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