Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)

A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Antonie van Leeuwenhoek 2021-06, Vol.114 (6), p.823-833
Hauptverfasser: Peng, Chenghui, Zhuang, Xiaoxin, Gao, Congting, Wang, Zhiyan, Zhao, Junwei, Huang, Sheng-Xiong, Liu, Chongxi, Xiang, Wensheng
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 833
container_issue 6
container_start_page 823
container_title Antonie van Leeuwenhoek
container_volume 114
creator Peng, Chenghui
Zhuang, Xiaoxin
Gao, Congting
Wang, Zhiyan
Zhao, Junwei
Huang, Sheng-Xiong
Liu, Chongxi
Xiang, Wensheng
description A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417 T was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces . The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H 8 ), MK-9(H 6 ) and MK-9(H 4 ). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be iso -C 16:0 , anteiso -C 15:0, iso -C 15:0 and C 16:0 . The genomic DNA G + C content of strain p1417 T based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417 T was most closely related to Streptomyces flavofungini JCM 4753 T (99.4% 16 S rRNA gene sequence similarity), Streptomyces alboflavus JCM 4615 T (98.8%) and Streptomyces aureoverticillatus JCM 4347 T (98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417 T and three closely related type strains. Therefore, it is concluded that strain p1417 T represents a novel species of the genus of Streptomyces , for which the name Streptomyces typhae sp. nov. is proposed. The type strain is p1417 T (= CCTCC AA 2019091 T  = DSM 110636 T ).
doi_str_mv 10.1007/s10482-021-01561-3
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2506507561</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2506507561</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</originalsourceid><addsrcrecordid>eNp9kc9u1DAQxi0EokvhBTggS1yKRJaxndjxsar4U2mlHlrOkeNMdl1l42A7RXkGXhrvbgGpB06j0fy-b0bzEfKWwZoBqE-RQVnzAjgrgFWSFeIZWbFK8UJLrZ-TFQCIQoLiZ-RVjPe51bJWL8mZEEqVSsKK_LpNAafk94vFSNMy7QzSOK3p6B_WH6k5VBwojp2fdktylhqb3HjkE9KfLu2oGZPr53FrhuPwwaWFuugHk7CjaYc0eJ-o76k1KRk30Iu7w56s284xS_3gDN2sP7wmL3ozRHzzWM_J9y-f766-FZubr9dXl5vCClWlQnCsKyw1NwrqspWiZL2SUmCnNfYMKoZ111qoOsbBlgZU27Wltp3gZatAinNycfKdgv8xY0zN3kWLw2BG9HNseAWyApU_mtH3T9B7P4cxX5cpriXUUh8M-YmywccYsG-m4PYmLA2D5hBVc4qqyVE1x6gakUXvHq3ndo_dX8mfbDIgTkDMo3GL4d_u_9j-BjWSn5Q</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2529608696</pqid></control><display><type>article</type><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><source>MEDLINE</source><source>SpringerNature Complete Journals</source><creator>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</creator><creatorcontrib>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</creatorcontrib><description>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417 T was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces . The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H 8 ), MK-9(H 6 ) and MK-9(H 4 ). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be iso -C 16:0 , anteiso -C 15:0, iso -C 15:0 and C 16:0 . The genomic DNA G + C content of strain p1417 T based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417 T was most closely related to Streptomyces flavofungini JCM 4753 T (99.4% 16 S rRNA gene sequence similarity), Streptomyces alboflavus JCM 4615 T (98.8%) and Streptomyces aureoverticillatus JCM 4347 T (98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417 T and three closely related type strains. Therefore, it is concluded that strain p1417 T represents a novel species of the genus of Streptomyces , for which the name Streptomyces typhae sp. nov. is proposed. The type strain is p1417 T (= CCTCC AA 2019091 T  = DSM 110636 T ).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01561-3</identifier><identifier>PMID: 33774760</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Actinobacteria ; Antifungal activity ; Antifungal Agents ; Aquatic plants ; Arabinose ; Base Composition ; Biomedical and Life Sciences ; Cardiolipin ; Cell walls ; China ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; Endophytes ; Fatty Acids ; Fungicides ; Gene sequencing ; Genomes ; Hybridization ; Hydrolysates ; Life Sciences ; Lipids ; Medical Microbiology ; Menaquinones ; Microbiology ; New species ; Nucleotide sequence ; Nucleotides ; Original Paper ; Phosphatidylethanolamine ; Phosphatidylinositol ; Phospholipids ; Phylogeny ; Physical characteristics ; Phytopathogenic fungi ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; rRNA ; Sequence analysis ; Sequence Analysis, DNA ; Soil Science &amp; Conservation ; Streptomyces ; Streptomyces - genetics ; Taxonomy ; Typha ; Typha angustifolia ; Typhaceae ; Vitamin K 2</subject><ispartof>Antonie van Leeuwenhoek, 2021-06, Vol.114 (6), p.823-833</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</citedby><cites>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</cites><orcidid>0000-0002-6505-7820</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01561-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01561-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33774760$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Peng, Chenghui</creatorcontrib><creatorcontrib>Zhuang, Xiaoxin</creatorcontrib><creatorcontrib>Gao, Congting</creatorcontrib><creatorcontrib>Wang, Zhiyan</creatorcontrib><creatorcontrib>Zhao, Junwei</creatorcontrib><creatorcontrib>Huang, Sheng-Xiong</creatorcontrib><creatorcontrib>Liu, Chongxi</creatorcontrib><creatorcontrib>Xiang, Wensheng</creatorcontrib><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417 T was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces . The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H 8 ), MK-9(H 6 ) and MK-9(H 4 ). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be iso -C 16:0 , anteiso -C 15:0, iso -C 15:0 and C 16:0 . The genomic DNA G + C content of strain p1417 T based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417 T was most closely related to Streptomyces flavofungini JCM 4753 T (99.4% 16 S rRNA gene sequence similarity), Streptomyces alboflavus JCM 4615 T (98.8%) and Streptomyces aureoverticillatus JCM 4347 T (98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417 T and three closely related type strains. Therefore, it is concluded that strain p1417 T represents a novel species of the genus of Streptomyces , for which the name Streptomyces typhae sp. nov. is proposed. The type strain is p1417 T (= CCTCC AA 2019091 T  = DSM 110636 T ).</description><subject>Actinobacteria</subject><subject>Antifungal activity</subject><subject>Antifungal Agents</subject><subject>Aquatic plants</subject><subject>Arabinose</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Cardiolipin</subject><subject>Cell walls</subject><subject>China</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Endophytes</subject><subject>Fatty Acids</subject><subject>Fungicides</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Hydrolysates</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Menaquinones</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylinositol</subject><subject>Phospholipids</subject><subject>Phylogeny</subject><subject>Physical characteristics</subject><subject>Phytopathogenic fungi</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA</subject><subject>Sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Science &amp; Conservation</subject><subject>Streptomyces</subject><subject>Streptomyces - genetics</subject><subject>Taxonomy</subject><subject>Typha</subject><subject>Typha angustifolia</subject><subject>Typhaceae</subject><subject>Vitamin K 2</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc9u1DAQxi0EokvhBTggS1yKRJaxndjxsar4U2mlHlrOkeNMdl1l42A7RXkGXhrvbgGpB06j0fy-b0bzEfKWwZoBqE-RQVnzAjgrgFWSFeIZWbFK8UJLrZ-TFQCIQoLiZ-RVjPe51bJWL8mZEEqVSsKK_LpNAafk94vFSNMy7QzSOK3p6B_WH6k5VBwojp2fdktylhqb3HjkE9KfLu2oGZPr53FrhuPwwaWFuugHk7CjaYc0eJ-o76k1KRk30Iu7w56s284xS_3gDN2sP7wmL3ozRHzzWM_J9y-f766-FZubr9dXl5vCClWlQnCsKyw1NwrqspWiZL2SUmCnNfYMKoZ111qoOsbBlgZU27Wltp3gZatAinNycfKdgv8xY0zN3kWLw2BG9HNseAWyApU_mtH3T9B7P4cxX5cpriXUUh8M-YmywccYsG-m4PYmLA2D5hBVc4qqyVE1x6gakUXvHq3ndo_dX8mfbDIgTkDMo3GL4d_u_9j-BjWSn5Q</recordid><startdate>20210601</startdate><enddate>20210601</enddate><creator>Peng, Chenghui</creator><creator>Zhuang, Xiaoxin</creator><creator>Gao, Congting</creator><creator>Wang, Zhiyan</creator><creator>Zhao, Junwei</creator><creator>Huang, Sheng-Xiong</creator><creator>Liu, Chongxi</creator><creator>Xiang, Wensheng</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6505-7820</orcidid></search><sort><creationdate>20210601</creationdate><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><author>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Actinobacteria</topic><topic>Antifungal activity</topic><topic>Antifungal Agents</topic><topic>Aquatic plants</topic><topic>Arabinose</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Cardiolipin</topic><topic>Cell walls</topic><topic>China</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Endophytes</topic><topic>Fatty Acids</topic><topic>Fungicides</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Hybridization</topic><topic>Hydrolysates</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Menaquinones</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylinositol</topic><topic>Phospholipids</topic><topic>Phylogeny</topic><topic>Physical characteristics</topic><topic>Phytopathogenic fungi</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA</topic><topic>Sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Science &amp; Conservation</topic><topic>Streptomyces</topic><topic>Streptomyces - genetics</topic><topic>Taxonomy</topic><topic>Typha</topic><topic>Typha angustifolia</topic><topic>Typhaceae</topic><topic>Vitamin K 2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Peng, Chenghui</creatorcontrib><creatorcontrib>Zhuang, Xiaoxin</creatorcontrib><creatorcontrib>Gao, Congting</creatorcontrib><creatorcontrib>Wang, Zhiyan</creatorcontrib><creatorcontrib>Zhao, Junwei</creatorcontrib><creatorcontrib>Huang, Sheng-Xiong</creatorcontrib><creatorcontrib>Liu, Chongxi</creatorcontrib><creatorcontrib>Xiang, Wensheng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Peng, Chenghui</au><au>Zhuang, Xiaoxin</au><au>Gao, Congting</au><au>Wang, Zhiyan</au><au>Zhao, Junwei</au><au>Huang, Sheng-Xiong</au><au>Liu, Chongxi</au><au>Xiang, Wensheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2021-06-01</date><risdate>2021</risdate><volume>114</volume><issue>6</issue><spage>823</spage><epage>833</epage><pages>823-833</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417 T was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces . The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H 8 ), MK-9(H 6 ) and MK-9(H 4 ). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be iso -C 16:0 , anteiso -C 15:0, iso -C 15:0 and C 16:0 . The genomic DNA G + C content of strain p1417 T based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417 T was most closely related to Streptomyces flavofungini JCM 4753 T (99.4% 16 S rRNA gene sequence similarity), Streptomyces alboflavus JCM 4615 T (98.8%) and Streptomyces aureoverticillatus JCM 4347 T (98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417 T and three closely related type strains. Therefore, it is concluded that strain p1417 T represents a novel species of the genus of Streptomyces , for which the name Streptomyces typhae sp. nov. is proposed. The type strain is p1417 T (= CCTCC AA 2019091 T  = DSM 110636 T ).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>33774760</pmid><doi>10.1007/s10482-021-01561-3</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-6505-7820</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0003-6072
ispartof Antonie van Leeuwenhoek, 2021-06, Vol.114 (6), p.823-833
issn 0003-6072
1572-9699
language eng
recordid cdi_proquest_miscellaneous_2506507561
source MEDLINE; SpringerNature Complete Journals
subjects Actinobacteria
Antifungal activity
Antifungal Agents
Aquatic plants
Arabinose
Base Composition
Biomedical and Life Sciences
Cardiolipin
Cell walls
China
Deoxyribonucleic acid
DNA
DNA, Bacterial - genetics
Endophytes
Fatty Acids
Fungicides
Gene sequencing
Genomes
Hybridization
Hydrolysates
Life Sciences
Lipids
Medical Microbiology
Menaquinones
Microbiology
New species
Nucleotide sequence
Nucleotides
Original Paper
Phosphatidylethanolamine
Phosphatidylinositol
Phospholipids
Phylogeny
Physical characteristics
Phytopathogenic fungi
Plant Sciences
RNA, Ribosomal, 16S - genetics
rRNA
Sequence analysis
Sequence Analysis, DNA
Soil Science & Conservation
Streptomyces
Streptomyces - genetics
Taxonomy
Typha
Typha angustifolia
Typhaceae
Vitamin K 2
title Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-28T07%3A45%3A50IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Streptomyces%20typhae%20sp.%20nov.,%20a%20novel%20endophytic%20actinomycete%20with%20antifungal%20activity%20isolated%20the%20root%20of%20cattail%20(Typha%20angustifolia%20L.)&rft.jtitle=Antonie%20van%20Leeuwenhoek&rft.au=Peng,%20Chenghui&rft.date=2021-06-01&rft.volume=114&rft.issue=6&rft.spage=823&rft.epage=833&rft.pages=823-833&rft.issn=0003-6072&rft.eissn=1572-9699&rft_id=info:doi/10.1007/s10482-021-01561-3&rft_dat=%3Cproquest_cross%3E2506507561%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2529608696&rft_id=info:pmid/33774760&rfr_iscdi=true