Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)
A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417 T , was isolated from the root of cattail ( Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the...
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description | A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417
T
, was isolated from the root of cattail (
Typha angustifolia
L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417
T
was found to have morphological and chemotaxonomic characteristics typical of the genus
Streptomyces
. The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H
8
), MK-9(H
6
) and MK-9(H
4
). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be
iso
-C
16:0
,
anteiso
-C
15:0,
iso
-C
15:0
and C
16:0
. The genomic DNA G + C content of strain p1417
T
based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417
T
was most closely related to
Streptomyces flavofungini
JCM 4753
T
(99.4% 16 S rRNA gene sequence similarity),
Streptomyces alboflavus
JCM 4615
T
(98.8%) and
Streptomyces aureoverticillatus
JCM 4347
T
(98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417
T
and three closely related type strains. Therefore, it is concluded that strain p1417
T
represents a novel species of the genus of
Streptomyces
, for which the name
Streptomyces typhae
sp. nov. is proposed. The type strain is p1417
T
(= CCTCC AA 2019091
T
= DSM 110636
T
). |
doi_str_mv | 10.1007/s10482-021-01561-3 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2506507561</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2506507561</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</originalsourceid><addsrcrecordid>eNp9kc9u1DAQxi0EokvhBTggS1yKRJaxndjxsar4U2mlHlrOkeNMdl1l42A7RXkGXhrvbgGpB06j0fy-b0bzEfKWwZoBqE-RQVnzAjgrgFWSFeIZWbFK8UJLrZ-TFQCIQoLiZ-RVjPe51bJWL8mZEEqVSsKK_LpNAafk94vFSNMy7QzSOK3p6B_WH6k5VBwojp2fdktylhqb3HjkE9KfLu2oGZPr53FrhuPwwaWFuugHk7CjaYc0eJ-o76k1KRk30Iu7w56s284xS_3gDN2sP7wmL3ozRHzzWM_J9y-f766-FZubr9dXl5vCClWlQnCsKyw1NwrqspWiZL2SUmCnNfYMKoZ111qoOsbBlgZU27Wltp3gZatAinNycfKdgv8xY0zN3kWLw2BG9HNseAWyApU_mtH3T9B7P4cxX5cpriXUUh8M-YmywccYsG-m4PYmLA2D5hBVc4qqyVE1x6gakUXvHq3ndo_dX8mfbDIgTkDMo3GL4d_u_9j-BjWSn5Q</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2529608696</pqid></control><display><type>article</type><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><source>MEDLINE</source><source>SpringerNature Complete Journals</source><creator>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</creator><creatorcontrib>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</creatorcontrib><description>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417
T
, was isolated from the root of cattail (
Typha angustifolia
L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417
T
was found to have morphological and chemotaxonomic characteristics typical of the genus
Streptomyces
. The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H
8
), MK-9(H
6
) and MK-9(H
4
). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be
iso
-C
16:0
,
anteiso
-C
15:0,
iso
-C
15:0
and C
16:0
. The genomic DNA G + C content of strain p1417
T
based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417
T
was most closely related to
Streptomyces flavofungini
JCM 4753
T
(99.4% 16 S rRNA gene sequence similarity),
Streptomyces alboflavus
JCM 4615
T
(98.8%) and
Streptomyces aureoverticillatus
JCM 4347
T
(98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417
T
and three closely related type strains. Therefore, it is concluded that strain p1417
T
represents a novel species of the genus of
Streptomyces
, for which the name
Streptomyces typhae
sp. nov. is proposed. The type strain is p1417
T
(= CCTCC AA 2019091
T
= DSM 110636
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01561-3</identifier><identifier>PMID: 33774760</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Actinobacteria ; Antifungal activity ; Antifungal Agents ; Aquatic plants ; Arabinose ; Base Composition ; Biomedical and Life Sciences ; Cardiolipin ; Cell walls ; China ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; Endophytes ; Fatty Acids ; Fungicides ; Gene sequencing ; Genomes ; Hybridization ; Hydrolysates ; Life Sciences ; Lipids ; Medical Microbiology ; Menaquinones ; Microbiology ; New species ; Nucleotide sequence ; Nucleotides ; Original Paper ; Phosphatidylethanolamine ; Phosphatidylinositol ; Phospholipids ; Phylogeny ; Physical characteristics ; Phytopathogenic fungi ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; rRNA ; Sequence analysis ; Sequence Analysis, DNA ; Soil Science & Conservation ; Streptomyces ; Streptomyces - genetics ; Taxonomy ; Typha ; Typha angustifolia ; Typhaceae ; Vitamin K 2</subject><ispartof>Antonie van Leeuwenhoek, 2021-06, Vol.114 (6), p.823-833</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</citedby><cites>FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</cites><orcidid>0000-0002-6505-7820</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01561-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01561-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33774760$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Peng, Chenghui</creatorcontrib><creatorcontrib>Zhuang, Xiaoxin</creatorcontrib><creatorcontrib>Gao, Congting</creatorcontrib><creatorcontrib>Wang, Zhiyan</creatorcontrib><creatorcontrib>Zhao, Junwei</creatorcontrib><creatorcontrib>Huang, Sheng-Xiong</creatorcontrib><creatorcontrib>Liu, Chongxi</creatorcontrib><creatorcontrib>Xiang, Wensheng</creatorcontrib><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417
T
, was isolated from the root of cattail (
Typha angustifolia
L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417
T
was found to have morphological and chemotaxonomic characteristics typical of the genus
Streptomyces
. The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H
8
), MK-9(H
6
) and MK-9(H
4
). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be
iso
-C
16:0
,
anteiso
-C
15:0,
iso
-C
15:0
and C
16:0
. The genomic DNA G + C content of strain p1417
T
based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417
T
was most closely related to
Streptomyces flavofungini
JCM 4753
T
(99.4% 16 S rRNA gene sequence similarity),
Streptomyces alboflavus
JCM 4615
T
(98.8%) and
Streptomyces aureoverticillatus
JCM 4347
T
(98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417
T
and three closely related type strains. Therefore, it is concluded that strain p1417
T
represents a novel species of the genus of
Streptomyces
, for which the name
Streptomyces typhae
sp. nov. is proposed. The type strain is p1417
T
(= CCTCC AA 2019091
T
= DSM 110636
T
).</description><subject>Actinobacteria</subject><subject>Antifungal activity</subject><subject>Antifungal Agents</subject><subject>Aquatic plants</subject><subject>Arabinose</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Cardiolipin</subject><subject>Cell walls</subject><subject>China</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Endophytes</subject><subject>Fatty Acids</subject><subject>Fungicides</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Hydrolysates</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Menaquinones</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylinositol</subject><subject>Phospholipids</subject><subject>Phylogeny</subject><subject>Physical characteristics</subject><subject>Phytopathogenic fungi</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA</subject><subject>Sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Science & Conservation</subject><subject>Streptomyces</subject><subject>Streptomyces - genetics</subject><subject>Taxonomy</subject><subject>Typha</subject><subject>Typha angustifolia</subject><subject>Typhaceae</subject><subject>Vitamin K 2</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc9u1DAQxi0EokvhBTggS1yKRJaxndjxsar4U2mlHlrOkeNMdl1l42A7RXkGXhrvbgGpB06j0fy-b0bzEfKWwZoBqE-RQVnzAjgrgFWSFeIZWbFK8UJLrZ-TFQCIQoLiZ-RVjPe51bJWL8mZEEqVSsKK_LpNAafk94vFSNMy7QzSOK3p6B_WH6k5VBwojp2fdktylhqb3HjkE9KfLu2oGZPr53FrhuPwwaWFuugHk7CjaYc0eJ-o76k1KRk30Iu7w56s284xS_3gDN2sP7wmL3ozRHzzWM_J9y-f766-FZubr9dXl5vCClWlQnCsKyw1NwrqspWiZL2SUmCnNfYMKoZ111qoOsbBlgZU27Wltp3gZatAinNycfKdgv8xY0zN3kWLw2BG9HNseAWyApU_mtH3T9B7P4cxX5cpriXUUh8M-YmywccYsG-m4PYmLA2D5hBVc4qqyVE1x6gakUXvHq3ndo_dX8mfbDIgTkDMo3GL4d_u_9j-BjWSn5Q</recordid><startdate>20210601</startdate><enddate>20210601</enddate><creator>Peng, Chenghui</creator><creator>Zhuang, Xiaoxin</creator><creator>Gao, Congting</creator><creator>Wang, Zhiyan</creator><creator>Zhao, Junwei</creator><creator>Huang, Sheng-Xiong</creator><creator>Liu, Chongxi</creator><creator>Xiang, Wensheng</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6505-7820</orcidid></search><sort><creationdate>20210601</creationdate><title>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</title><author>Peng, Chenghui ; Zhuang, Xiaoxin ; Gao, Congting ; Wang, Zhiyan ; Zhao, Junwei ; Huang, Sheng-Xiong ; Liu, Chongxi ; Xiang, Wensheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-32e85e492a7084b6341f7663ed99ef1051e8dbc05d120c4a07bdb49cd324b7063</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Actinobacteria</topic><topic>Antifungal activity</topic><topic>Antifungal Agents</topic><topic>Aquatic plants</topic><topic>Arabinose</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Cardiolipin</topic><topic>Cell walls</topic><topic>China</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Endophytes</topic><topic>Fatty Acids</topic><topic>Fungicides</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Hybridization</topic><topic>Hydrolysates</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Menaquinones</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylinositol</topic><topic>Phospholipids</topic><topic>Phylogeny</topic><topic>Physical characteristics</topic><topic>Phytopathogenic fungi</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA</topic><topic>Sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Science & Conservation</topic><topic>Streptomyces</topic><topic>Streptomyces - genetics</topic><topic>Taxonomy</topic><topic>Typha</topic><topic>Typha angustifolia</topic><topic>Typhaceae</topic><topic>Vitamin K 2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Peng, Chenghui</creatorcontrib><creatorcontrib>Zhuang, Xiaoxin</creatorcontrib><creatorcontrib>Gao, Congting</creatorcontrib><creatorcontrib>Wang, Zhiyan</creatorcontrib><creatorcontrib>Zhao, Junwei</creatorcontrib><creatorcontrib>Huang, Sheng-Xiong</creatorcontrib><creatorcontrib>Liu, Chongxi</creatorcontrib><creatorcontrib>Xiang, Wensheng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Peng, Chenghui</au><au>Zhuang, Xiaoxin</au><au>Gao, Congting</au><au>Wang, Zhiyan</au><au>Zhao, Junwei</au><au>Huang, Sheng-Xiong</au><au>Liu, Chongxi</au><au>Xiang, Wensheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2021-06-01</date><risdate>2021</risdate><volume>114</volume><issue>6</issue><spage>823</spage><epage>833</epage><pages>823-833</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417
T
, was isolated from the root of cattail (
Typha angustifolia
L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417
T
was found to have morphological and chemotaxonomic characteristics typical of the genus
Streptomyces
. The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H
8
), MK-9(H
6
) and MK-9(H
4
). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be
iso
-C
16:0
,
anteiso
-C
15:0,
iso
-C
15:0
and C
16:0
. The genomic DNA G + C content of strain p1417
T
based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417
T
was most closely related to
Streptomyces flavofungini
JCM 4753
T
(99.4% 16 S rRNA gene sequence similarity),
Streptomyces alboflavus
JCM 4615
T
(98.8%) and
Streptomyces aureoverticillatus
JCM 4347
T
(98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417
T
and three closely related type strains. Therefore, it is concluded that strain p1417
T
represents a novel species of the genus of
Streptomyces
, for which the name
Streptomyces typhae
sp. nov. is proposed. The type strain is p1417
T
(= CCTCC AA 2019091
T
= DSM 110636
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>33774760</pmid><doi>10.1007/s10482-021-01561-3</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-6505-7820</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0003-6072 |
ispartof | Antonie van Leeuwenhoek, 2021-06, Vol.114 (6), p.823-833 |
issn | 0003-6072 1572-9699 |
language | eng |
recordid | cdi_proquest_miscellaneous_2506507561 |
source | MEDLINE; SpringerNature Complete Journals |
subjects | Actinobacteria Antifungal activity Antifungal Agents Aquatic plants Arabinose Base Composition Biomedical and Life Sciences Cardiolipin Cell walls China Deoxyribonucleic acid DNA DNA, Bacterial - genetics Endophytes Fatty Acids Fungicides Gene sequencing Genomes Hybridization Hydrolysates Life Sciences Lipids Medical Microbiology Menaquinones Microbiology New species Nucleotide sequence Nucleotides Original Paper Phosphatidylethanolamine Phosphatidylinositol Phospholipids Phylogeny Physical characteristics Phytopathogenic fungi Plant Sciences RNA, Ribosomal, 16S - genetics rRNA Sequence analysis Sequence Analysis, DNA Soil Science & Conservation Streptomyces Streptomyces - genetics Taxonomy Typha Typha angustifolia Typhaceae Vitamin K 2 |
title | Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.) |
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