Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets

Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate tha...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Chembiochem : a European journal of chemical biology 2021-06, Vol.22 (12), p.2111-2115
Hauptverfasser: Reddy, Sravanthi S., Pal, Sunit, Ghosh, Sudip, Prabhakaran, Erode N.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 2115
container_issue 12
container_start_page 2111
container_title Chembiochem : a European journal of chemical biology
container_volume 22
creator Reddy, Sravanthi S.
Pal, Sunit
Ghosh, Sudip
Prabhakaran, Erode N.
description Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets. Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.
doi_str_mv 10.1002/cbic.202100028
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2504339726</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2540501583</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</originalsourceid><addsrcrecordid>eNqF0D9OwzAUBnALgWgprIwoEgtLiv_FTsY2UFqpEkNhjhzHhlSpU-xEKBtH4CwchENwEly1FImF6flJP396-gA4R3CIIMTXMi_lEEPsF4jjA9BHlCQhZ4Qc7t4UY94DJ84tPUkYQcegRwiPEI9oH0ymXWHrJ2WCcW2KYNFav4lGfb29p7VxjRWlUUVw0xmxKmUwMk25FlZUlaqCzw-vFs9KNe4UHGlROXW2mwPwOLl9SKfh_P5ulo7moSScxGEkYcy4JjmDWgvOYsFkETEiqUKaQiaSgguqC8ohzpGQiCDJkdQ8lommhSIDcLXNXdv6pVWuyValk6qqhFF16zIcQUpIwjHz9PIPXdatNf46ryiMIIpi4tVwq6StnbNKZ2tbroTtMgSzTcPZpuFs37D_cLGLbfOVKvb8p1IPki14LSvV_ROXpeNZ-hv-DTj_iVA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2540501583</pqid></control><display><type>article</type><title>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</title><source>MEDLINE</source><source>Wiley Online Library All Journals</source><creator>Reddy, Sravanthi S. ; Pal, Sunit ; Ghosh, Sudip ; Prabhakaran, Erode N.</creator><creatorcontrib>Reddy, Sravanthi S. ; Pal, Sunit ; Ghosh, Sudip ; Prabhakaran, Erode N.</creatorcontrib><description>Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets. Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</description><identifier>ISSN: 1439-4227</identifier><identifier>EISSN: 1439-7633</identifier><identifier>DOI: 10.1002/cbic.202100028</identifier><identifier>PMID: 33751754</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>antiparallel beta-sheets ; cis/trans isomerism ; Coils ; Constraints ; dynamic templates ; H-bond surrogates ; H-bonds ; Hydrogen Bonding ; Hydrogen bonds ; Kinetics ; NMR ; Nuclear magnetic resonance ; Nuclear Magnetic Resonance, Biomolecular ; Peptides - chemistry ; Protein Conformation, beta-Strand ; Sheets ; Thermodynamics</subject><ispartof>Chembiochem : a European journal of chemical biology, 2021-06, Vol.22 (12), p.2111-2115</ispartof><rights>2021 Wiley‐VCH GmbH</rights><rights>2021 Wiley-VCH GmbH.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</citedby><cites>FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</cites><orcidid>0000-0002-9195-1199</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcbic.202100028$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcbic.202100028$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33751754$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Reddy, Sravanthi S.</creatorcontrib><creatorcontrib>Pal, Sunit</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Prabhakaran, Erode N.</creatorcontrib><title>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</title><title>Chembiochem : a European journal of chemical biology</title><addtitle>Chembiochem</addtitle><description>Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets. Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</description><subject>antiparallel beta-sheets</subject><subject>cis/trans isomerism</subject><subject>Coils</subject><subject>Constraints</subject><subject>dynamic templates</subject><subject>H-bond surrogates</subject><subject>H-bonds</subject><subject>Hydrogen Bonding</subject><subject>Hydrogen bonds</subject><subject>Kinetics</subject><subject>NMR</subject><subject>Nuclear magnetic resonance</subject><subject>Nuclear Magnetic Resonance, Biomolecular</subject><subject>Peptides - chemistry</subject><subject>Protein Conformation, beta-Strand</subject><subject>Sheets</subject><subject>Thermodynamics</subject><issn>1439-4227</issn><issn>1439-7633</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0D9OwzAUBnALgWgprIwoEgtLiv_FTsY2UFqpEkNhjhzHhlSpU-xEKBtH4CwchENwEly1FImF6flJP396-gA4R3CIIMTXMi_lEEPsF4jjA9BHlCQhZ4Qc7t4UY94DJ84tPUkYQcegRwiPEI9oH0ymXWHrJ2WCcW2KYNFav4lGfb29p7VxjRWlUUVw0xmxKmUwMk25FlZUlaqCzw-vFs9KNe4UHGlROXW2mwPwOLl9SKfh_P5ulo7moSScxGEkYcy4JjmDWgvOYsFkETEiqUKaQiaSgguqC8ohzpGQiCDJkdQ8lommhSIDcLXNXdv6pVWuyValk6qqhFF16zIcQUpIwjHz9PIPXdatNf46ryiMIIpi4tVwq6StnbNKZ2tbroTtMgSzTcPZpuFs37D_cLGLbfOVKvb8p1IPki14LSvV_ROXpeNZ-hv-DTj_iVA</recordid><startdate>20210615</startdate><enddate>20210615</enddate><creator>Reddy, Sravanthi S.</creator><creator>Pal, Sunit</creator><creator>Ghosh, Sudip</creator><creator>Prabhakaran, Erode N.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9195-1199</orcidid></search><sort><creationdate>20210615</creationdate><title>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</title><author>Reddy, Sravanthi S. ; Pal, Sunit ; Ghosh, Sudip ; Prabhakaran, Erode N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>antiparallel beta-sheets</topic><topic>cis/trans isomerism</topic><topic>Coils</topic><topic>Constraints</topic><topic>dynamic templates</topic><topic>H-bond surrogates</topic><topic>H-bonds</topic><topic>Hydrogen Bonding</topic><topic>Hydrogen bonds</topic><topic>Kinetics</topic><topic>NMR</topic><topic>Nuclear magnetic resonance</topic><topic>Nuclear Magnetic Resonance, Biomolecular</topic><topic>Peptides - chemistry</topic><topic>Protein Conformation, beta-Strand</topic><topic>Sheets</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Reddy, Sravanthi S.</creatorcontrib><creatorcontrib>Pal, Sunit</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Prabhakaran, Erode N.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Chembiochem : a European journal of chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Reddy, Sravanthi S.</au><au>Pal, Sunit</au><au>Ghosh, Sudip</au><au>Prabhakaran, Erode N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</atitle><jtitle>Chembiochem : a European journal of chemical biology</jtitle><addtitle>Chembiochem</addtitle><date>2021-06-15</date><risdate>2021</risdate><volume>22</volume><issue>12</issue><spage>2111</spage><epage>2115</epage><pages>2111-2115</pages><issn>1439-4227</issn><eissn>1439-7633</eissn><abstract>Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets. Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>33751754</pmid><doi>10.1002/cbic.202100028</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0002-9195-1199</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 1439-4227
ispartof Chembiochem : a European journal of chemical biology, 2021-06, Vol.22 (12), p.2111-2115
issn 1439-4227
1439-7633
language eng
recordid cdi_proquest_miscellaneous_2504339726
source MEDLINE; Wiley Online Library All Journals
subjects antiparallel beta-sheets
cis/trans isomerism
Coils
Constraints
dynamic templates
H-bond surrogates
H-bonds
Hydrogen Bonding
Hydrogen bonds
Kinetics
NMR
Nuclear magnetic resonance
Nuclear Magnetic Resonance, Biomolecular
Peptides - chemistry
Protein Conformation, beta-Strand
Sheets
Thermodynamics
title Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-18T18%3A16%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Hydrogen%20Bond%20Surrogate%E2%80%90Constrained%20Dynamic%20Antiparallel%20%CE%B2%E2%80%90Sheets&rft.jtitle=Chembiochem%20:%20a%20European%20journal%20of%20chemical%20biology&rft.au=Reddy,%20Sravanthi%20S.&rft.date=2021-06-15&rft.volume=22&rft.issue=12&rft.spage=2111&rft.epage=2115&rft.pages=2111-2115&rft.issn=1439-4227&rft.eissn=1439-7633&rft_id=info:doi/10.1002/cbic.202100028&rft_dat=%3Cproquest_cross%3E2540501583%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2540501583&rft_id=info:pmid/33751754&rfr_iscdi=true