Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets
Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate tha...
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Veröffentlicht in: | Chembiochem : a European journal of chemical biology 2021-06, Vol.22 (12), p.2111-2115 |
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creator | Reddy, Sravanthi S. Pal, Sunit Ghosh, Sudip Prabhakaran, Erode N. |
description | Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets.
Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates. |
doi_str_mv | 10.1002/cbic.202100028 |
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Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</description><identifier>ISSN: 1439-4227</identifier><identifier>EISSN: 1439-7633</identifier><identifier>DOI: 10.1002/cbic.202100028</identifier><identifier>PMID: 33751754</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>antiparallel beta-sheets ; cis/trans isomerism ; Coils ; Constraints ; dynamic templates ; H-bond surrogates ; H-bonds ; Hydrogen Bonding ; Hydrogen bonds ; Kinetics ; NMR ; Nuclear magnetic resonance ; Nuclear Magnetic Resonance, Biomolecular ; Peptides - chemistry ; Protein Conformation, beta-Strand ; Sheets ; Thermodynamics</subject><ispartof>Chembiochem : a European journal of chemical biology, 2021-06, Vol.22 (12), p.2111-2115</ispartof><rights>2021 Wiley‐VCH GmbH</rights><rights>2021 Wiley-VCH GmbH.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</citedby><cites>FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</cites><orcidid>0000-0002-9195-1199</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcbic.202100028$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcbic.202100028$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33751754$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Reddy, Sravanthi S.</creatorcontrib><creatorcontrib>Pal, Sunit</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Prabhakaran, Erode N.</creatorcontrib><title>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</title><title>Chembiochem : a European journal of chemical biology</title><addtitle>Chembiochem</addtitle><description>Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets.
Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</description><subject>antiparallel beta-sheets</subject><subject>cis/trans isomerism</subject><subject>Coils</subject><subject>Constraints</subject><subject>dynamic templates</subject><subject>H-bond surrogates</subject><subject>H-bonds</subject><subject>Hydrogen Bonding</subject><subject>Hydrogen bonds</subject><subject>Kinetics</subject><subject>NMR</subject><subject>Nuclear magnetic resonance</subject><subject>Nuclear Magnetic Resonance, Biomolecular</subject><subject>Peptides - chemistry</subject><subject>Protein Conformation, beta-Strand</subject><subject>Sheets</subject><subject>Thermodynamics</subject><issn>1439-4227</issn><issn>1439-7633</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0D9OwzAUBnALgWgprIwoEgtLiv_FTsY2UFqpEkNhjhzHhlSpU-xEKBtH4CwchENwEly1FImF6flJP396-gA4R3CIIMTXMi_lEEPsF4jjA9BHlCQhZ4Qc7t4UY94DJ84tPUkYQcegRwiPEI9oH0ymXWHrJ2WCcW2KYNFav4lGfb29p7VxjRWlUUVw0xmxKmUwMk25FlZUlaqCzw-vFs9KNe4UHGlROXW2mwPwOLl9SKfh_P5ulo7moSScxGEkYcy4JjmDWgvOYsFkETEiqUKaQiaSgguqC8ohzpGQiCDJkdQ8lommhSIDcLXNXdv6pVWuyValk6qqhFF16zIcQUpIwjHz9PIPXdatNf46ryiMIIpi4tVwq6StnbNKZ2tbroTtMgSzTcPZpuFs37D_cLGLbfOVKvb8p1IPki14LSvV_ROXpeNZ-hv-DTj_iVA</recordid><startdate>20210615</startdate><enddate>20210615</enddate><creator>Reddy, Sravanthi S.</creator><creator>Pal, Sunit</creator><creator>Ghosh, Sudip</creator><creator>Prabhakaran, Erode N.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9195-1199</orcidid></search><sort><creationdate>20210615</creationdate><title>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</title><author>Reddy, Sravanthi S. ; Pal, Sunit ; Ghosh, Sudip ; Prabhakaran, Erode N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3738-5c0867f3b60ffa768a6cd563c4e1f406a9d7a4fd4702b1ac131c71cf78c9f4de3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>antiparallel beta-sheets</topic><topic>cis/trans isomerism</topic><topic>Coils</topic><topic>Constraints</topic><topic>dynamic templates</topic><topic>H-bond surrogates</topic><topic>H-bonds</topic><topic>Hydrogen Bonding</topic><topic>Hydrogen bonds</topic><topic>Kinetics</topic><topic>NMR</topic><topic>Nuclear magnetic resonance</topic><topic>Nuclear Magnetic Resonance, Biomolecular</topic><topic>Peptides - chemistry</topic><topic>Protein Conformation, beta-Strand</topic><topic>Sheets</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Reddy, Sravanthi S.</creatorcontrib><creatorcontrib>Pal, Sunit</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Prabhakaran, Erode N.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Chembiochem : a European journal of chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Reddy, Sravanthi S.</au><au>Pal, Sunit</au><au>Ghosh, Sudip</au><au>Prabhakaran, Erode N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets</atitle><jtitle>Chembiochem : a European journal of chemical biology</jtitle><addtitle>Chembiochem</addtitle><date>2021-06-15</date><risdate>2021</risdate><volume>22</volume><issue>12</issue><spage>2111</spage><epage>2115</epage><pages>2111-2115</pages><issn>1439-4227</issn><eissn>1439-7633</eissn><abstract>Antiparallel β‐sheets are important secondary structures within proteins that equilibrate with random‐coil states; however, little is known about the exact dynamics of this process. Here, the first dynamic β‐sheet models that mimic this equilibrium have been designed by using an H‐bond surrogate that introduces constraint and torque into a tertiary amide bond. 2D NMR data sufficiently reveal the structure, kinetics, and thermodynamics of the folding process, thereby leading the way to similar analysis in isolated biologically relevant β‐sheets.
Synthetic sheets: The dynamism of short strands between random‐coil and antiparallel β‐sheet states is mimicked in H‐bond‐surrogate (HBS) constrained peptidomimetic models. 2D NMR data yield complete structural, kinetic and thermodynamic details of the β‐sheet⇄non‐β‐sheet equilibrium in these dynamic templates.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>33751754</pmid><doi>10.1002/cbic.202100028</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0002-9195-1199</orcidid></addata></record> |
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subjects | antiparallel beta-sheets cis/trans isomerism Coils Constraints dynamic templates H-bond surrogates H-bonds Hydrogen Bonding Hydrogen bonds Kinetics NMR Nuclear magnetic resonance Nuclear Magnetic Resonance, Biomolecular Peptides - chemistry Protein Conformation, beta-Strand Sheets Thermodynamics |
title | Hydrogen Bond Surrogate‐Constrained Dynamic Antiparallel β‐Sheets |
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