The role of melanocytes in the human choroidal microenvironment and inflammation: Insights from the transcriptome
The choroid within the human eye contains a rich milieu of cells including melanocytes. Human choroidal melanocytes (HCMs) absorb light, regulate free radical production, and were recently shown to modulate inflammation. This study aimed to identify key genes and pathways involved in the inflammator...
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Veröffentlicht in: | Pigment cell and melanoma research 2021-09, Vol.34 (5), p.928-945 |
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creator | Cioanca, Adrian V. Wu, Chieh‐Lin (Stanley) Natoli, Riccardo Conway, R. Max McCluskey, Peter J. Jager, Martine J Sitiwin, Ephrem I. Eamegdool, Steven S. Madigan, Michele C. |
description | The choroid within the human eye contains a rich milieu of cells including melanocytes. Human choroidal melanocytes (HCMs) absorb light, regulate free radical production, and were recently shown to modulate inflammation. This study aimed to identify key genes and pathways involved in the inflammatory response of HCMs through the use of RNA‐seq. Primary HCMs were cultured from donor choroids, RNA was extracted from control and lipopolysaccharide (LPS)‐treated HCMs, and mRNA was sequenced. Functional annotation and pathway analysis were performed using gene ontology and gene set enrichment analyses. Representative RNA‐seq results were verified with RT‐qPCR and protein measurements. We detected 100 differentially expressed genes including an array of CCL and CXCL cytokines and mediators of cell–cell and cell–matrix adhesion, such as ICAM1, CLDN1, CCN3, ITGA1 and ITGA11. Functional annotation showed that these gene sets control inflammatory pathways, immune cell trafficking, cell–cell adhesion, interactions with the extracellular matrix and blood vessels, angiogenesis and epithelial‐to‐mesenchymal transitions. Our study provides insights into the transcriptional regulation of primary HCMs in response to inflammatory stimuli and identifies novel melanocyte‐driven mechanisms potentially involved in choroidal homeostasis and inflammation. |
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Max ; McCluskey, Peter J. ; Jager, Martine J ; Sitiwin, Ephrem I. ; Eamegdool, Steven S. ; Madigan, Michele C.</creator><creatorcontrib>Cioanca, Adrian V. ; Wu, Chieh‐Lin (Stanley) ; Natoli, Riccardo ; Conway, R. Max ; McCluskey, Peter J. ; Jager, Martine J ; Sitiwin, Ephrem I. ; Eamegdool, Steven S. ; Madigan, Michele C.</creatorcontrib><description>The choroid within the human eye contains a rich milieu of cells including melanocytes. Human choroidal melanocytes (HCMs) absorb light, regulate free radical production, and were recently shown to modulate inflammation. This study aimed to identify key genes and pathways involved in the inflammatory response of HCMs through the use of RNA‐seq. Primary HCMs were cultured from donor choroids, RNA was extracted from control and lipopolysaccharide (LPS)‐treated HCMs, and mRNA was sequenced. Functional annotation and pathway analysis were performed using gene ontology and gene set enrichment analyses. Representative RNA‐seq results were verified with RT‐qPCR and protein measurements. We detected 100 differentially expressed genes including an array of CCL and CXCL cytokines and mediators of cell–cell and cell–matrix adhesion, such as ICAM1, CLDN1, CCN3, ITGA1 and ITGA11. Functional annotation showed that these gene sets control inflammatory pathways, immune cell trafficking, cell–cell adhesion, interactions with the extracellular matrix and blood vessels, angiogenesis and epithelial‐to‐mesenchymal transitions. Our study provides insights into the transcriptional regulation of primary HCMs in response to inflammatory stimuli and identifies novel melanocyte‐driven mechanisms potentially involved in choroidal homeostasis and inflammation.</description><identifier>ISSN: 1755-1471</identifier><identifier>EISSN: 1755-148X</identifier><identifier>DOI: 10.1111/pcmr.12972</identifier><identifier>PMID: 33749119</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>Adhesion ; Angiogenesis ; Annotations ; Blood vessels ; Cell adhesion ; Cellular Microenvironment ; choroid ; Choroid - cytology ; Choroid - metabolism ; Cytokines ; Extracellular matrix ; Free radicals ; Gene regulation ; Genes ; Homeostasis ; Humans ; Immune system ; Inflammation ; Inflammatory response ; Intercellular adhesion molecule 1 ; Knowledge representation ; Lipopolysaccharides ; melanocortin receptor 1 ; Melanocytes ; Melanocytes - cytology ; Melanocytes - metabolism ; Mesenchyme ; Microenvironments ; Ribonucleic acid ; RNA ; RNA-Seq ; Transcription ; Transcriptome ; Transcriptomes ; vasculature</subject><ispartof>Pigment cell and melanoma research, 2021-09, Vol.34 (5), p.928-945</ispartof><rights>2021 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd</rights><rights>2021 John Wiley & Sons A/S. 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Max</creatorcontrib><creatorcontrib>McCluskey, Peter J.</creatorcontrib><creatorcontrib>Jager, Martine J</creatorcontrib><creatorcontrib>Sitiwin, Ephrem I.</creatorcontrib><creatorcontrib>Eamegdool, Steven S.</creatorcontrib><creatorcontrib>Madigan, Michele C.</creatorcontrib><title>The role of melanocytes in the human choroidal microenvironment and inflammation: Insights from the transcriptome</title><title>Pigment cell and melanoma research</title><addtitle>Pigment Cell Melanoma Res</addtitle><description>The choroid within the human eye contains a rich milieu of cells including melanocytes. Human choroidal melanocytes (HCMs) absorb light, regulate free radical production, and were recently shown to modulate inflammation. This study aimed to identify key genes and pathways involved in the inflammatory response of HCMs through the use of RNA‐seq. Primary HCMs were cultured from donor choroids, RNA was extracted from control and lipopolysaccharide (LPS)‐treated HCMs, and mRNA was sequenced. Functional annotation and pathway analysis were performed using gene ontology and gene set enrichment analyses. Representative RNA‐seq results were verified with RT‐qPCR and protein measurements. We detected 100 differentially expressed genes including an array of CCL and CXCL cytokines and mediators of cell–cell and cell–matrix adhesion, such as ICAM1, CLDN1, CCN3, ITGA1 and ITGA11. Functional annotation showed that these gene sets control inflammatory pathways, immune cell trafficking, cell–cell adhesion, interactions with the extracellular matrix and blood vessels, angiogenesis and epithelial‐to‐mesenchymal transitions. Our study provides insights into the transcriptional regulation of primary HCMs in response to inflammatory stimuli and identifies novel melanocyte‐driven mechanisms potentially involved in choroidal homeostasis and inflammation.</description><subject>Adhesion</subject><subject>Angiogenesis</subject><subject>Annotations</subject><subject>Blood vessels</subject><subject>Cell adhesion</subject><subject>Cellular Microenvironment</subject><subject>choroid</subject><subject>Choroid - cytology</subject><subject>Choroid - metabolism</subject><subject>Cytokines</subject><subject>Extracellular matrix</subject><subject>Free radicals</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>Homeostasis</subject><subject>Humans</subject><subject>Immune system</subject><subject>Inflammation</subject><subject>Inflammatory response</subject><subject>Intercellular adhesion molecule 1</subject><subject>Knowledge representation</subject><subject>Lipopolysaccharides</subject><subject>melanocortin receptor 1</subject><subject>Melanocytes</subject><subject>Melanocytes - cytology</subject><subject>Melanocytes - metabolism</subject><subject>Mesenchyme</subject><subject>Microenvironments</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA-Seq</subject><subject>Transcription</subject><subject>Transcriptome</subject><subject>Transcriptomes</subject><subject>vasculature</subject><issn>1755-1471</issn><issn>1755-148X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp90UFrHCEYBmAJKdl0m0t-QBByCYHd6Kijk1tYmjawpaGk0NvgOp9Zw6gbnWnZf1-zm-bQQ7wo-PCi34vQKSVzWtbVxvg0p1UjqwN0TKUQM8rVr8O3s6QT9DHnJ0JqIhp2hCaMSd5Q2hyj54c14BR7wNFiD70O0WwHyNgFPJSr9eh1wGYdU3Sd7rF3JkUIv12KwUMYsA5dsbbX3uvBxXCN70J2j-shY5ui34UMSYdsktsM0cMn9MHqPsPJ6z5FP28_Pyy-zpbfv9wtbpYzw4SsZoopLWUHinNKNDCrqeaMdbZWXCmiRaMtWa2EAE5kpzgRwkrTmaYBYY1hbIou9rmbFJ9HyEPrXTbQly9CHHNbCcLqmtecFnr-H32KYwrldUXVDROq4qqoy70qE8g5gW03yXmdti0l7UsR7UsR7a6Igs9eI8eVh-6N_pt8AXQP_rgetu9EtfeLbz_2oX8BDBuU2g</recordid><startdate>202109</startdate><enddate>202109</enddate><creator>Cioanca, Adrian V.</creator><creator>Wu, Chieh‐Lin (Stanley)</creator><creator>Natoli, Riccardo</creator><creator>Conway, R. 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Max ; McCluskey, Peter J. ; Jager, Martine J ; Sitiwin, Ephrem I. ; Eamegdool, Steven S. ; Madigan, Michele C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3572-838a77de84410ae3fa1a433df684880a59af0bb55e407d84055f7cdc99e5fcc33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adhesion</topic><topic>Angiogenesis</topic><topic>Annotations</topic><topic>Blood vessels</topic><topic>Cell adhesion</topic><topic>Cellular Microenvironment</topic><topic>choroid</topic><topic>Choroid - cytology</topic><topic>Choroid - metabolism</topic><topic>Cytokines</topic><topic>Extracellular matrix</topic><topic>Free radicals</topic><topic>Gene regulation</topic><topic>Genes</topic><topic>Homeostasis</topic><topic>Humans</topic><topic>Immune system</topic><topic>Inflammation</topic><topic>Inflammatory response</topic><topic>Intercellular adhesion molecule 1</topic><topic>Knowledge representation</topic><topic>Lipopolysaccharides</topic><topic>melanocortin receptor 1</topic><topic>Melanocytes</topic><topic>Melanocytes - cytology</topic><topic>Melanocytes - metabolism</topic><topic>Mesenchyme</topic><topic>Microenvironments</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA-Seq</topic><topic>Transcription</topic><topic>Transcriptome</topic><topic>Transcriptomes</topic><topic>vasculature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cioanca, Adrian V.</creatorcontrib><creatorcontrib>Wu, Chieh‐Lin (Stanley)</creatorcontrib><creatorcontrib>Natoli, Riccardo</creatorcontrib><creatorcontrib>Conway, R. 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Max</au><au>McCluskey, Peter J.</au><au>Jager, Martine J</au><au>Sitiwin, Ephrem I.</au><au>Eamegdool, Steven S.</au><au>Madigan, Michele C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The role of melanocytes in the human choroidal microenvironment and inflammation: Insights from the transcriptome</atitle><jtitle>Pigment cell and melanoma research</jtitle><addtitle>Pigment Cell Melanoma Res</addtitle><date>2021-09</date><risdate>2021</risdate><volume>34</volume><issue>5</issue><spage>928</spage><epage>945</epage><pages>928-945</pages><issn>1755-1471</issn><eissn>1755-148X</eissn><abstract>The choroid within the human eye contains a rich milieu of cells including melanocytes. Human choroidal melanocytes (HCMs) absorb light, regulate free radical production, and were recently shown to modulate inflammation. This study aimed to identify key genes and pathways involved in the inflammatory response of HCMs through the use of RNA‐seq. Primary HCMs were cultured from donor choroids, RNA was extracted from control and lipopolysaccharide (LPS)‐treated HCMs, and mRNA was sequenced. Functional annotation and pathway analysis were performed using gene ontology and gene set enrichment analyses. Representative RNA‐seq results were verified with RT‐qPCR and protein measurements. We detected 100 differentially expressed genes including an array of CCL and CXCL cytokines and mediators of cell–cell and cell–matrix adhesion, such as ICAM1, CLDN1, CCN3, ITGA1 and ITGA11. Functional annotation showed that these gene sets control inflammatory pathways, immune cell trafficking, cell–cell adhesion, interactions with the extracellular matrix and blood vessels, angiogenesis and epithelial‐to‐mesenchymal transitions. Our study provides insights into the transcriptional regulation of primary HCMs in response to inflammatory stimuli and identifies novel melanocyte‐driven mechanisms potentially involved in choroidal homeostasis and inflammation.</abstract><cop>England</cop><pub>Wiley Subscription Services, Inc</pub><pmid>33749119</pmid><doi>10.1111/pcmr.12972</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0003-1379-9993</orcidid></addata></record> |
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subjects | Adhesion Angiogenesis Annotations Blood vessels Cell adhesion Cellular Microenvironment choroid Choroid - cytology Choroid - metabolism Cytokines Extracellular matrix Free radicals Gene regulation Genes Homeostasis Humans Immune system Inflammation Inflammatory response Intercellular adhesion molecule 1 Knowledge representation Lipopolysaccharides melanocortin receptor 1 Melanocytes Melanocytes - cytology Melanocytes - metabolism Mesenchyme Microenvironments Ribonucleic acid RNA RNA-Seq Transcription Transcriptome Transcriptomes vasculature |
title | The role of melanocytes in the human choroidal microenvironment and inflammation: Insights from the transcriptome |
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