Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases
[Display omitted] •This article proposes Profile-based fuzzy association rule mining algorithm.•Defining a specific profile for each patient based on age, gender and condition.•Extracting numerical normal ranges for each patient based on determined profile.•Profile-based fuzzy partitioning dramatica...
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Veröffentlicht in: | Journal of biomedical informatics 2021-04, Vol.116, p.103695-103695, Article 103695 |
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creator | Yavari, Ali Rajabzadeh, Amir Abdali-Mohammadi, Fardin |
description | [Display omitted]
•This article proposes Profile-based fuzzy association rule mining algorithm.•Defining a specific profile for each patient based on age, gender and condition.•Extracting numerical normal ranges for each patient based on determined profile.•Profile-based fuzzy partitioning dramatically improves the results accuracy.•Proposed method is evaluated using Z-Alizadeh Sani heart dataset.
The existing data mining solutions to identify risk factors associated with diseases are burdened with quite a few shortcomings. They usually use crisp partitions for numerical features and also do not use patient-specific profiles. These shortcomings create limitations for solving real problems. Discretizing a numerical feature through crisp partitions can also generate substantial partitioning errors, particularly for features whose values are closer to crisp boundaries. Since the normal range of each numerical feature varies according to the age, gender, and medical conditions of the patients, then ignoring these differences can undermine the accuracy of the extracted itemsets and rules. This paper presents a profile-based fuzzy association rule mining (PB-FARM) approach for the assessment of risk factors highly correlated with diseases. The proposed approach has three phases. Phase I involves creating profiles for patients based on their age, gender, and medical conditions, to determine a normal range of each numerical feature. Then fuzzy partitioning is done for all features (namely, numerical and categorical), and consequently, a structure, called FirstScan, is created. In Phase II, the FirstScan structure is utilized to mine for large fuzzy k-itemsets. Ultimately, in Phase III, the given k-itemsets are employed to generate fuzzy rules for associations between risk factors and diseases. To evaluate the performance of the proposed method the Z-Alizadeh Sani coronary artery disease (CAD) dataset, containing 303 records and 54 features, was used. The results show a positive correlation between typical chest pain and old age with the incidence of CAD. The comparisons made in this study showed that, firstly, the proposed algorithm has a higher partitioning accuracy than other methods, and secondly, it has a reasonably short execution time. |
doi_str_mv | 10.1016/j.jbi.2021.103695 |
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•This article proposes Profile-based fuzzy association rule mining algorithm.•Defining a specific profile for each patient based on age, gender and condition.•Extracting numerical normal ranges for each patient based on determined profile.•Profile-based fuzzy partitioning dramatically improves the results accuracy.•Proposed method is evaluated using Z-Alizadeh Sani heart dataset.
The existing data mining solutions to identify risk factors associated with diseases are burdened with quite a few shortcomings. They usually use crisp partitions for numerical features and also do not use patient-specific profiles. These shortcomings create limitations for solving real problems. Discretizing a numerical feature through crisp partitions can also generate substantial partitioning errors, particularly for features whose values are closer to crisp boundaries. Since the normal range of each numerical feature varies according to the age, gender, and medical conditions of the patients, then ignoring these differences can undermine the accuracy of the extracted itemsets and rules. This paper presents a profile-based fuzzy association rule mining (PB-FARM) approach for the assessment of risk factors highly correlated with diseases. The proposed approach has three phases. Phase I involves creating profiles for patients based on their age, gender, and medical conditions, to determine a normal range of each numerical feature. Then fuzzy partitioning is done for all features (namely, numerical and categorical), and consequently, a structure, called FirstScan, is created. In Phase II, the FirstScan structure is utilized to mine for large fuzzy k-itemsets. Ultimately, in Phase III, the given k-itemsets are employed to generate fuzzy rules for associations between risk factors and diseases. To evaluate the performance of the proposed method the Z-Alizadeh Sani coronary artery disease (CAD) dataset, containing 303 records and 54 features, was used. The results show a positive correlation between typical chest pain and old age with the incidence of CAD. The comparisons made in this study showed that, firstly, the proposed algorithm has a higher partitioning accuracy than other methods, and secondly, it has a reasonably short execution time.</description><identifier>ISSN: 1532-0464</identifier><identifier>EISSN: 1532-0480</identifier><identifier>DOI: 10.1016/j.jbi.2021.103695</identifier><identifier>PMID: 33549658</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Coronary artery disease ; Data mining ; Patient profile ; Profile-based fuzzy association rule mining ; Risk factor</subject><ispartof>Journal of biomedical informatics, 2021-04, Vol.116, p.103695-103695, Article 103695</ispartof><rights>2021 Elsevier Inc.</rights><rights>Copyright © 2021 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c396t-fb51d95b85dc96512fa3baf71e48e23c2299f43d894f3fb5f5d91c436b9d0bdb3</citedby><cites>FETCH-LOGICAL-c396t-fb51d95b85dc96512fa3baf71e48e23c2299f43d894f3fb5f5d91c436b9d0bdb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1532046421000241$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33549658$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yavari, Ali</creatorcontrib><creatorcontrib>Rajabzadeh, Amir</creatorcontrib><creatorcontrib>Abdali-Mohammadi, Fardin</creatorcontrib><title>Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases</title><title>Journal of biomedical informatics</title><addtitle>J Biomed Inform</addtitle><description>[Display omitted]
•This article proposes Profile-based fuzzy association rule mining algorithm.•Defining a specific profile for each patient based on age, gender and condition.•Extracting numerical normal ranges for each patient based on determined profile.•Profile-based fuzzy partitioning dramatically improves the results accuracy.•Proposed method is evaluated using Z-Alizadeh Sani heart dataset.
The existing data mining solutions to identify risk factors associated with diseases are burdened with quite a few shortcomings. They usually use crisp partitions for numerical features and also do not use patient-specific profiles. These shortcomings create limitations for solving real problems. Discretizing a numerical feature through crisp partitions can also generate substantial partitioning errors, particularly for features whose values are closer to crisp boundaries. Since the normal range of each numerical feature varies according to the age, gender, and medical conditions of the patients, then ignoring these differences can undermine the accuracy of the extracted itemsets and rules. This paper presents a profile-based fuzzy association rule mining (PB-FARM) approach for the assessment of risk factors highly correlated with diseases. The proposed approach has three phases. Phase I involves creating profiles for patients based on their age, gender, and medical conditions, to determine a normal range of each numerical feature. Then fuzzy partitioning is done for all features (namely, numerical and categorical), and consequently, a structure, called FirstScan, is created. In Phase II, the FirstScan structure is utilized to mine for large fuzzy k-itemsets. Ultimately, in Phase III, the given k-itemsets are employed to generate fuzzy rules for associations between risk factors and diseases. To evaluate the performance of the proposed method the Z-Alizadeh Sani coronary artery disease (CAD) dataset, containing 303 records and 54 features, was used. The results show a positive correlation between typical chest pain and old age with the incidence of CAD. The comparisons made in this study showed that, firstly, the proposed algorithm has a higher partitioning accuracy than other methods, and secondly, it has a reasonably short execution time.</description><subject>Coronary artery disease</subject><subject>Data mining</subject><subject>Patient profile</subject><subject>Profile-based fuzzy association rule mining</subject><subject>Risk factor</subject><issn>1532-0464</issn><issn>1532-0480</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kDtvFDEURi0EIg_4ATTIJc0sfk7GUEUREKRIUEBt-XFNvJoZL74zkTYtfxyvNmxJ5df3HV0fQt5wtuGM9--3m63PG8EEb2fZG_2MnHMtRcfUwJ6f9r06IxeIW8Y417p_Sc6k1Mr0ejgnf77XkvIInXcIkTpEQJxgXmhJNGaEdo3UpQRhyQ9AkwtLqUhXzPMvmtbHx_2hVEJ2Sy4zresIdMrz4dXtdrW4cP-BXtPQOBSXNe5pnuk9uLqc8K_Ii-RGhNdP6yX5-fnTj5vb7u7bl68313ddkKZfuuQ1j0b7QcfQhuciOelduuKgBhAyCGFMUjIORiXZwklHw4OSvTeR-ejlJXl35Laxfq-Ai50yBhhHN0NZ0Qo1XClh2KBblB-joRbECsnuap5c3VvO7MG93drm3h7c26P71nn7hF_9BPHU-Ce7BT4eA9A--ZChWgwZ5gAx16bXxpL_g_8LkfOXPg</recordid><startdate>202104</startdate><enddate>202104</enddate><creator>Yavari, Ali</creator><creator>Rajabzadeh, Amir</creator><creator>Abdali-Mohammadi, Fardin</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202104</creationdate><title>Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases</title><author>Yavari, Ali ; Rajabzadeh, Amir ; Abdali-Mohammadi, Fardin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c396t-fb51d95b85dc96512fa3baf71e48e23c2299f43d894f3fb5f5d91c436b9d0bdb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Coronary artery disease</topic><topic>Data mining</topic><topic>Patient profile</topic><topic>Profile-based fuzzy association rule mining</topic><topic>Risk factor</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yavari, Ali</creatorcontrib><creatorcontrib>Rajabzadeh, Amir</creatorcontrib><creatorcontrib>Abdali-Mohammadi, Fardin</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of biomedical informatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yavari, Ali</au><au>Rajabzadeh, Amir</au><au>Abdali-Mohammadi, Fardin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases</atitle><jtitle>Journal of biomedical informatics</jtitle><addtitle>J Biomed Inform</addtitle><date>2021-04</date><risdate>2021</risdate><volume>116</volume><spage>103695</spage><epage>103695</epage><pages>103695-103695</pages><artnum>103695</artnum><issn>1532-0464</issn><eissn>1532-0480</eissn><abstract>[Display omitted]
•This article proposes Profile-based fuzzy association rule mining algorithm.•Defining a specific profile for each patient based on age, gender and condition.•Extracting numerical normal ranges for each patient based on determined profile.•Profile-based fuzzy partitioning dramatically improves the results accuracy.•Proposed method is evaluated using Z-Alizadeh Sani heart dataset.
The existing data mining solutions to identify risk factors associated with diseases are burdened with quite a few shortcomings. They usually use crisp partitions for numerical features and also do not use patient-specific profiles. These shortcomings create limitations for solving real problems. Discretizing a numerical feature through crisp partitions can also generate substantial partitioning errors, particularly for features whose values are closer to crisp boundaries. Since the normal range of each numerical feature varies according to the age, gender, and medical conditions of the patients, then ignoring these differences can undermine the accuracy of the extracted itemsets and rules. This paper presents a profile-based fuzzy association rule mining (PB-FARM) approach for the assessment of risk factors highly correlated with diseases. The proposed approach has three phases. Phase I involves creating profiles for patients based on their age, gender, and medical conditions, to determine a normal range of each numerical feature. Then fuzzy partitioning is done for all features (namely, numerical and categorical), and consequently, a structure, called FirstScan, is created. In Phase II, the FirstScan structure is utilized to mine for large fuzzy k-itemsets. Ultimately, in Phase III, the given k-itemsets are employed to generate fuzzy rules for associations between risk factors and diseases. To evaluate the performance of the proposed method the Z-Alizadeh Sani coronary artery disease (CAD) dataset, containing 303 records and 54 features, was used. The results show a positive correlation between typical chest pain and old age with the incidence of CAD. The comparisons made in this study showed that, firstly, the proposed algorithm has a higher partitioning accuracy than other methods, and secondly, it has a reasonably short execution time.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>33549658</pmid><doi>10.1016/j.jbi.2021.103695</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Coronary artery disease Data mining Patient profile Profile-based fuzzy association rule mining Risk factor |
title | Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases |
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