Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy

Aims Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understand...

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Veröffentlicht in:Nephrology (Carlton, Vic.) Vic.), 2021-05, Vol.26 (5), p.432-441
Hauptverfasser: Luan, Rumei, Tian, Geng, Ci, Xin, Zheng, Qian, Wu, Linlin, Lu, Xuehong
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container_start_page 432
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creator Luan, Rumei
Tian, Geng
Ci, Xin
Zheng, Qian
Wu, Linlin
Lu, Xuehong
description Aims Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients. Methods A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network. Results We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes. Conclusion The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN. SUMMARY AT A GLANCE An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.
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This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients. Methods A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network. Results We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes. Conclusion The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN. SUMMARY AT A GLANCE An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.</description><identifier>ISSN: 1320-5358</identifier><identifier>EISSN: 1440-1797</identifier><identifier>DOI: 10.1111/nep.13855</identifier><identifier>PMID: 33501721</identifier><language>eng</language><publisher>Melbourne: John Wiley &amp; Sons Australia, Ltd</publisher><subject>1-Phosphatidylinositol 3-kinase ; Adult ; AKT protein ; Angiotensin ; Circular RNA ; exosome ; Exosomes ; Exosomes - genetics ; Gene Expression Regulation ; Gene regulation ; Genes ; Genomes ; Glomerulonephritis, IGA - genetics ; Glomerulonephritis, IGA - metabolism ; Glomerulonephritis, IGA - urine ; high‐throughput sequencing ; Humans ; IgA nephropathy ; Immunoglobulin A ; Kidney diseases ; Kinases ; Male ; microRNA ; Middle Aged ; miRNA ; mRNA ; Polymerase chain reaction ; RNA, Circular - biosynthesis ; RNA, Circular - urine ; Signal transduction ; Young Adult</subject><ispartof>Nephrology (Carlton, Vic.), 2021-05, Vol.26 (5), p.432-441</ispartof><rights>2021 Asian Pacific Society of Nephrology</rights><rights>2021 Asian Pacific Society of Nephrology.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3535-b09ca3dc4dc6b6c3649a378943dbe014442269e17617bbd2d6c0ea353dd701573</citedby><cites>FETCH-LOGICAL-c3535-b09ca3dc4dc6b6c3649a378943dbe014442269e17617bbd2d6c0ea353dd701573</cites><orcidid>0000-0002-0380-2477</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fnep.13855$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fnep.13855$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33501721$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Luan, Rumei</creatorcontrib><creatorcontrib>Tian, Geng</creatorcontrib><creatorcontrib>Ci, Xin</creatorcontrib><creatorcontrib>Zheng, Qian</creatorcontrib><creatorcontrib>Wu, Linlin</creatorcontrib><creatorcontrib>Lu, Xuehong</creatorcontrib><title>Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy</title><title>Nephrology (Carlton, Vic.)</title><addtitle>Nephrology (Carlton)</addtitle><description>Aims Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients. Methods A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network. Results We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes. Conclusion The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN. SUMMARY AT A GLANCE An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. 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Calcified Tissue Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Nephrology (Carlton, Vic.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Luan, Rumei</au><au>Tian, Geng</au><au>Ci, Xin</au><au>Zheng, Qian</au><au>Wu, Linlin</au><au>Lu, Xuehong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy</atitle><jtitle>Nephrology (Carlton, Vic.)</jtitle><addtitle>Nephrology (Carlton)</addtitle><date>2021-05</date><risdate>2021</risdate><volume>26</volume><issue>5</issue><spage>432</spage><epage>441</epage><pages>432-441</pages><issn>1320-5358</issn><eissn>1440-1797</eissn><abstract>Aims Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients. Methods A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network. Results We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes. Conclusion The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN. SUMMARY AT A GLANCE An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.</abstract><cop>Melbourne</cop><pub>John Wiley &amp; Sons Australia, Ltd</pub><pmid>33501721</pmid><doi>10.1111/nep.13855</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-0380-2477</orcidid></addata></record>
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subjects 1-Phosphatidylinositol 3-kinase
Adult
AKT protein
Angiotensin
Circular RNA
exosome
Exosomes
Exosomes - genetics
Gene Expression Regulation
Gene regulation
Genes
Genomes
Glomerulonephritis, IGA - genetics
Glomerulonephritis, IGA - metabolism
Glomerulonephritis, IGA - urine
high‐throughput sequencing
Humans
IgA nephropathy
Immunoglobulin A
Kidney diseases
Kinases
Male
microRNA
Middle Aged
miRNA
mRNA
Polymerase chain reaction
RNA, Circular - biosynthesis
RNA, Circular - urine
Signal transduction
Young Adult
title Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy
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