Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy
Aims Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understand...
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Veröffentlicht in: | Nephrology (Carlton, Vic.) Vic.), 2021-05, Vol.26 (5), p.432-441 |
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creator | Luan, Rumei Tian, Geng Ci, Xin Zheng, Qian Wu, Linlin Lu, Xuehong |
description | Aims
Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients.
Methods
A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network.
Results
We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes.
Conclusion
The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN.
SUMMARY AT A GLANCE
An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition. |
doi_str_mv | 10.1111/nep.13855 |
format | Article |
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Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients.
Methods
A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network.
Results
We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes.
Conclusion
The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN.
SUMMARY AT A GLANCE
An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.</description><identifier>ISSN: 1320-5358</identifier><identifier>EISSN: 1440-1797</identifier><identifier>DOI: 10.1111/nep.13855</identifier><identifier>PMID: 33501721</identifier><language>eng</language><publisher>Melbourne: John Wiley & Sons Australia, Ltd</publisher><subject>1-Phosphatidylinositol 3-kinase ; Adult ; AKT protein ; Angiotensin ; Circular RNA ; exosome ; Exosomes ; Exosomes - genetics ; Gene Expression Regulation ; Gene regulation ; Genes ; Genomes ; Glomerulonephritis, IGA - genetics ; Glomerulonephritis, IGA - metabolism ; Glomerulonephritis, IGA - urine ; high‐throughput sequencing ; Humans ; IgA nephropathy ; Immunoglobulin A ; Kidney diseases ; Kinases ; Male ; microRNA ; Middle Aged ; miRNA ; mRNA ; Polymerase chain reaction ; RNA, Circular - biosynthesis ; RNA, Circular - urine ; Signal transduction ; Young Adult</subject><ispartof>Nephrology (Carlton, Vic.), 2021-05, Vol.26 (5), p.432-441</ispartof><rights>2021 Asian Pacific Society of Nephrology</rights><rights>2021 Asian Pacific Society of Nephrology.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3535-b09ca3dc4dc6b6c3649a378943dbe014442269e17617bbd2d6c0ea353dd701573</citedby><cites>FETCH-LOGICAL-c3535-b09ca3dc4dc6b6c3649a378943dbe014442269e17617bbd2d6c0ea353dd701573</cites><orcidid>0000-0002-0380-2477</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fnep.13855$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fnep.13855$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33501721$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Luan, Rumei</creatorcontrib><creatorcontrib>Tian, Geng</creatorcontrib><creatorcontrib>Ci, Xin</creatorcontrib><creatorcontrib>Zheng, Qian</creatorcontrib><creatorcontrib>Wu, Linlin</creatorcontrib><creatorcontrib>Lu, Xuehong</creatorcontrib><title>Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy</title><title>Nephrology (Carlton, Vic.)</title><addtitle>Nephrology (Carlton)</addtitle><description>Aims
Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients.
Methods
A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network.
Results
We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes.
Conclusion
The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN.
SUMMARY AT A GLANCE
An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.</description><subject>1-Phosphatidylinositol 3-kinase</subject><subject>Adult</subject><subject>AKT protein</subject><subject>Angiotensin</subject><subject>Circular RNA</subject><subject>exosome</subject><subject>Exosomes</subject><subject>Exosomes - genetics</subject><subject>Gene Expression Regulation</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>Genomes</subject><subject>Glomerulonephritis, IGA - genetics</subject><subject>Glomerulonephritis, IGA - metabolism</subject><subject>Glomerulonephritis, IGA - urine</subject><subject>high‐throughput sequencing</subject><subject>Humans</subject><subject>IgA nephropathy</subject><subject>Immunoglobulin A</subject><subject>Kidney diseases</subject><subject>Kinases</subject><subject>Male</subject><subject>microRNA</subject><subject>Middle Aged</subject><subject>miRNA</subject><subject>mRNA</subject><subject>Polymerase chain reaction</subject><subject>RNA, Circular - biosynthesis</subject><subject>RNA, Circular - urine</subject><subject>Signal transduction</subject><subject>Young Adult</subject><issn>1320-5358</issn><issn>1440-1797</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kMtOwzAQRS0EoqWw4AeQJTawSOtHHs2yKgUqVQUhWEeO41BXSRzsRCV_z5QUFkh4MyPP8fXci9AlJWMKZ1Kpekz5NAiO0JD6PvFoFEfH0HNGvIAH0wE6c25LCI1YSE_RgPNg39Mhknc6z5VVVaNFgdVnbZVz2lRYVKLonHbY5Li1uhK2g7FxpgROaivbQlj8sp45rCtci0aDhsM73Wzw8n2GYaeNNXC_6c7RSS4Kpy4OdYTe7hev80dv9fSwnM9WnuSwpJeSWAqeST-TYRpKHvqx4NE09nmWKgK-fMbCWNEopFGaZiwLJVECnmZZRGgQ8RG66XVraz5a5Zqk1E6qohCVMq1LmD-lIYtZwAG9_oNuTWvBMlABiRmDjwlQtz0lrXHOqjyprS4hiYSSZJ98Ai6T7-SBvTootmmpsl_yJ2oAJj2w04Xq_ldK1ovnXvILNg6M9Q</recordid><startdate>202105</startdate><enddate>202105</enddate><creator>Luan, Rumei</creator><creator>Tian, Geng</creator><creator>Ci, Xin</creator><creator>Zheng, Qian</creator><creator>Wu, Linlin</creator><creator>Lu, Xuehong</creator><general>John Wiley & Sons Australia, Ltd</general><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0380-2477</orcidid></search><sort><creationdate>202105</creationdate><title>Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy</title><author>Luan, Rumei ; Tian, Geng ; Ci, Xin ; Zheng, Qian ; Wu, Linlin ; Lu, Xuehong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3535-b09ca3dc4dc6b6c3649a378943dbe014442269e17617bbd2d6c0ea353dd701573</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>1-Phosphatidylinositol 3-kinase</topic><topic>Adult</topic><topic>AKT protein</topic><topic>Angiotensin</topic><topic>Circular RNA</topic><topic>exosome</topic><topic>Exosomes</topic><topic>Exosomes - genetics</topic><topic>Gene Expression Regulation</topic><topic>Gene regulation</topic><topic>Genes</topic><topic>Genomes</topic><topic>Glomerulonephritis, IGA - genetics</topic><topic>Glomerulonephritis, IGA - metabolism</topic><topic>Glomerulonephritis, IGA - urine</topic><topic>high‐throughput sequencing</topic><topic>Humans</topic><topic>IgA nephropathy</topic><topic>Immunoglobulin A</topic><topic>Kidney diseases</topic><topic>Kinases</topic><topic>Male</topic><topic>microRNA</topic><topic>Middle Aged</topic><topic>miRNA</topic><topic>mRNA</topic><topic>Polymerase chain reaction</topic><topic>RNA, Circular - biosynthesis</topic><topic>RNA, Circular - urine</topic><topic>Signal transduction</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Luan, Rumei</creatorcontrib><creatorcontrib>Tian, Geng</creatorcontrib><creatorcontrib>Ci, Xin</creatorcontrib><creatorcontrib>Zheng, Qian</creatorcontrib><creatorcontrib>Wu, Linlin</creatorcontrib><creatorcontrib>Lu, Xuehong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Nephrology (Carlton, Vic.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Luan, Rumei</au><au>Tian, Geng</au><au>Ci, Xin</au><au>Zheng, Qian</au><au>Wu, Linlin</au><au>Lu, Xuehong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy</atitle><jtitle>Nephrology (Carlton, Vic.)</jtitle><addtitle>Nephrology (Carlton)</addtitle><date>2021-05</date><risdate>2021</risdate><volume>26</volume><issue>5</issue><spage>432</spage><epage>441</epage><pages>432-441</pages><issn>1320-5358</issn><eissn>1440-1797</eissn><abstract>Aims
Immunoglobulin A nephropathy (IgAN) is the most common primary glomerular disease to cause end‐stage kidney disease. This study investigated the difference in urinary exosomal circular RNA (circRNA) expression profiles between patients with IgAN and healthy controls (HCs), for better understanding of gene regulation in exosomes of IgAN patients.
Methods
A pairwise comparison of urinary circRNA expression profiles between IgAN patients and HCs was performed using methods, including high‐throughput sequencing and quantitative polymerase chain reaction. Moreover, the potential functions of differentially expressed circRNAs (DECs) in IgAN were investigated by gene ontology (GO) enrichment analysis; Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis; and the circRNA‐miRNA‐mRNA network.
Results
We identified 450 upregulated and 26 downregulated circRNAs in the IgAN patients. GO analysis showed that these enriched circRNAs might regulate primary miRNA processing, the ability of angiotensin receptor binding, and stress fibre function. KEGG analysis suggested these DECs may be closely associated with the phosphoinositide‐3‐kinase‐protein kinase B/Akt (PI3K‐Akt) signalling pathways. Network analysis revealed the relationship between circRNAs and their target genes.
Conclusion
The identified DECs may be useful for both researches on molecular aetiology of IgAN and development of potentially novel non‐invasive biomarkers of IgAN.
SUMMARY AT A GLANCE
An RNA‐sequence analysis of RNAs in urinary exosomes identified a number of differentially expressed circular RNAs in immunoglobulin A nephropathy (IgAN) patients as compared to healthy controls. These circRNAs are associated with the regulation of pathways relevant to IgAN and may provide useful non‐invasive biomarkers for this condition.</abstract><cop>Melbourne</cop><pub>John Wiley & Sons Australia, Ltd</pub><pmid>33501721</pmid><doi>10.1111/nep.13855</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-0380-2477</orcidid></addata></record> |
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source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
subjects | 1-Phosphatidylinositol 3-kinase Adult AKT protein Angiotensin Circular RNA exosome Exosomes Exosomes - genetics Gene Expression Regulation Gene regulation Genes Genomes Glomerulonephritis, IGA - genetics Glomerulonephritis, IGA - metabolism Glomerulonephritis, IGA - urine high‐throughput sequencing Humans IgA nephropathy Immunoglobulin A Kidney diseases Kinases Male microRNA Middle Aged miRNA mRNA Polymerase chain reaction RNA, Circular - biosynthesis RNA, Circular - urine Signal transduction Young Adult |
title | Differential expression analysis of urinary exosomal circular RNAs in patients with IgA nephropathy |
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